HEADER FLAVOPROTEIN 14-OCT-04 1VP8 TITLE CRYSTAL STRUCTURE OF AN ALPHA/BETA DOMAIN OF A PUTATIVE PYRUVATE TITLE 2 KINASE (AF0103) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 1.30 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN AF0103; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: NP_068944.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PUTATIVE PYRUVATE KINASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 16-OCT-24 1VP8 1 REMARK REVDAT 6 25-JAN-23 1VP8 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1VP8 1 VERSN REVDAT 4 28-JUL-10 1VP8 1 HEADER TITLE KEYWDS REVDAT 3 24-FEB-09 1VP8 1 VERSN REVDAT 2 18-JAN-05 1VP8 1 REMARK REVDAT 1 26-OCT-04 1VP8 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (NP_068944.1) FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS AT 1.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3335 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1563 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1529 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2118 ; 1.620 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3547 ; 0.973 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 5.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;32.570 ;23.284 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;12.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1665 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 294 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 284 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1555 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 780 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 907 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 105 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 95 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1022 ; 1.713 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 392 ; 0.295 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1567 ; 1.801 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 674 ; 3.532 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 551 ; 4.812 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0350 8.2710 23.2070 REMARK 3 T TENSOR REMARK 3 T11: -0.0281 T22: -0.0722 REMARK 3 T33: -0.0577 T12: -0.0255 REMARK 3 T13: -0.0013 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.4682 L22: 0.6234 REMARK 3 L33: 0.5325 L12: -0.0485 REMARK 3 L13: 0.0503 L23: -0.1275 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.0231 S13: -0.1238 REMARK 3 S21: 0.0277 S22: 0.0100 S23: 0.1057 REMARK 3 S31: 0.1527 S32: -0.0981 S33: -0.0371 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. AN UNKNOWN LIGAND HAS BEEN MODELED NEAR THE FMN GROUP. REMARK 4 REMARK 4 1VP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000002032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.3.1; 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000034; REMARK 200 1.019859,0.979547,0.979667 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 4.2), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66691 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 24.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.97400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50.0% PEG-200, 0.1M HEPES PH 7.5, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.22550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.22550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.22550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.22550 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.22550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.22550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 30710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 109.65000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 54.82500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 94.95969 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 54.82500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 94.95969 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 38.22550 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 109.65000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 38.22550 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 38.22550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 ND1 CD2 CE1 NE2 REMARK 470 GLU A 2 CD OE1 OE2 REMARK 470 LYS A 10 CD CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 50 CD OE1 OE2 REMARK 470 GLU A 53 CD OE1 OE2 REMARK 470 ARG A 85 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 14 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 155 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 97 -54.88 -146.30 REMARK 500 SER A 156 -58.17 74.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 14 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 356685 RELATED DB: TARGETDB DBREF 1VP8 A 1 189 UNP O30133 O30133_ARCFU 1 189 SEQADV 1VP8 MSE A -11 UNP O30133 EXPRESSION TAG SEQADV 1VP8 GLY A -10 UNP O30133 EXPRESSION TAG SEQADV 1VP8 SER A -9 UNP O30133 EXPRESSION TAG SEQADV 1VP8 ASP A -8 UNP O30133 EXPRESSION TAG SEQADV 1VP8 LYS A -7 UNP O30133 EXPRESSION TAG SEQADV 1VP8 ILE A -6 UNP O30133 EXPRESSION TAG SEQADV 1VP8 HIS A -5 UNP O30133 EXPRESSION TAG SEQADV 1VP8 HIS A -4 UNP O30133 EXPRESSION TAG SEQADV 1VP8 HIS A -3 UNP O30133 EXPRESSION TAG SEQADV 1VP8 HIS A -2 UNP O30133 EXPRESSION TAG SEQADV 1VP8 HIS A -1 UNP O30133 EXPRESSION TAG SEQADV 1VP8 HIS A 0 UNP O30133 EXPRESSION TAG SEQADV 1VP8 MSE A 1 UNP O30133 MET 1 MODIFIED RESIDUE SEQADV 1VP8 MSE A 46 UNP O30133 MET 46 MODIFIED RESIDUE SEQADV 1VP8 MSE A 51 UNP O30133 MET 51 MODIFIED RESIDUE SEQADV 1VP8 MSE A 74 UNP O30133 MET 74 MODIFIED RESIDUE SEQADV 1VP8 MSE A 137 UNP O30133 MET 137 MODIFIED RESIDUE SEQADV 1VP8 MSE A 170 UNP O30133 MET 170 MODIFIED RESIDUE SEQADV 1VP8 MSE A 184 UNP O30133 MET 184 MODIFIED RESIDUE SEQRES 1 A 201 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 201 GLU LYS LYS ILE VAL TYR PHE ASN LYS PRO GLY ARG GLU SEQRES 3 A 201 ASN THR GLU GLU THR LEU ARG LEU ALA VAL GLU ARG ALA SEQRES 4 A 201 LYS GLU LEU GLY ILE LYS HIS LEU VAL VAL ALA SER SER SEQRES 5 A 201 TYR GLY ASP THR ALA MSE LYS ALA LEU GLU MSE ALA GLU SEQRES 6 A 201 GLY LEU GLU VAL VAL VAL VAL THR TYR HIS THR GLY PHE SEQRES 7 A 201 VAL ARG GLU GLY GLU ASN THR MSE PRO PRO GLU VAL GLU SEQRES 8 A 201 GLU GLU LEU ARG LYS ARG GLY ALA LYS ILE VAL ARG GLN SEQRES 9 A 201 SER HIS ILE LEU SER GLY LEU GLU ARG SER ILE SER ARG SEQRES 10 A 201 LYS LEU GLY GLY VAL SER ARG THR GLU ALA ILE ALA GLU SEQRES 11 A 201 ALA LEU ARG SER LEU PHE GLY HIS GLY LEU LYS VAL CYS SEQRES 12 A 201 VAL GLU ILE THR ILE MSE ALA ALA ASP SER GLY ALA ILE SEQRES 13 A 201 PRO ILE GLU GLU VAL VAL ALA VAL GLY GLY ARG SER ARG SEQRES 14 A 201 GLY ALA ASP THR ALA VAL VAL ILE ARG PRO ALA HIS MSE SEQRES 15 A 201 ASN ASN PHE PHE ASP ALA GLU ILE LYS GLU ILE ILE CYS SEQRES 16 A 201 MSE PRO ARG ASN LYS ARG MODRES 1VP8 MSE A 1 MET SELENOMETHIONINE MODRES 1VP8 MSE A 46 MET SELENOMETHIONINE MODRES 1VP8 MSE A 51 MET SELENOMETHIONINE MODRES 1VP8 MSE A 74 MET SELENOMETHIONINE MODRES 1VP8 MSE A 137 MET SELENOMETHIONINE MODRES 1VP8 MSE A 170 MET SELENOMETHIONINE MODRES 1VP8 MSE A 184 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 46 12 HET MSE A 51 8 HET MSE A 74 8 HET MSE A 137 8 HET MSE A 170 8 HET MSE A 184 8 HET FMN A 500 31 HET UNL A 601 7 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM UNL UNKNOWN LIGAND HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 4 HOH *155(H2 O) HELIX 1 1 GLY A 12 GLU A 14 5 3 HELIX 2 2 ASN A 15 GLY A 31 1 17 HELIX 3 3 GLY A 42 ALA A 52 1 11 HELIX 4 4 PRO A 75 ARG A 85 1 11 HELIX 5 5 LEU A 99 LEU A 107 1 9 HELIX 6 6 SER A 111 GLY A 125 1 15 HELIX 7 7 GLY A 125 SER A 141 1 17 HELIX 8 8 ASN A 172 ALA A 176 5 5 SHEET 1 A 7 VAL A 6 PHE A 8 0 SHEET 2 A 7 GLU A 177 PRO A 185 1 O MSE A 184 N VAL A 6 SHEET 3 A 7 THR A 161 ARG A 166 -1 N ARG A 166 O GLU A 177 SHEET 4 A 7 VAL A 149 GLY A 153 -1 N VAL A 149 O ILE A 165 SHEET 5 A 7 HIS A 34 ALA A 38 1 N VAL A 36 O VAL A 150 SHEET 6 A 7 GLU A 56 THR A 61 1 O VAL A 58 N LEU A 35 SHEET 7 A 7 LYS A 88 ARG A 91 1 O VAL A 90 N VAL A 59 LINK C HIS A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N GLU A 2 1555 1555 1.32 LINK C ALA A 45 N MSE A 46 1555 1555 1.32 LINK C MSE A 46 N LYS A 47 1555 1555 1.32 LINK C GLU A 50 N MSE A 51 1555 1555 1.32 LINK C MSE A 51 N ALA A 52 1555 1555 1.34 LINK C THR A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N PRO A 75 1555 1555 1.30 LINK C ILE A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N ALA A 138 1555 1555 1.34 LINK C HIS A 169 N MSE A 170 1555 1555 1.32 LINK C MSE A 170 N ASN A 171 1555 1555 1.32 LINK C CYS A 183 N MSE A 184 1555 1555 1.34 LINK C MSE A 184 N PRO A 185 1555 1555 1.34 SITE 1 AC1 24 ALA A 38 SER A 39 SER A 40 TYR A 41 SITE 2 AC1 24 GLY A 42 ASP A 43 THR A 44 VAL A 60 SITE 3 AC1 24 THR A 61 TYR A 62 HIS A 94 ARG A 121 SITE 4 AC1 24 HIS A 126 LYS A 129 VAL A 130 GLU A 133 SITE 5 AC1 24 MSE A 137 GLY A 154 ARG A 155 SER A 156 SITE 6 AC1 24 ARG A 157 GLY A 158 UNL A 601 HOH A 631 SITE 1 AC2 9 TYR A 62 PHE A 66 HIS A 94 ARG A 101 SITE 2 AC2 9 ARG A 121 LYS A 129 FMN A 500 HOH A 613 SITE 3 AC2 9 HOH A 739 CRYST1 109.650 109.650 76.451 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009120 0.005265 0.000000 0.00000 SCALE2 0.000000 0.010531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013080 0.00000