data_1VPY # _entry.id 1VPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VPY pdb_00001vpy 10.2210/pdb1vpy/pdb RCSB RCSB002046 ? ? WWPDB D_1000002046 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 357242 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1VPY _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2004-11-23 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of hypothetical protein (ef0366) from Enterococcus faecalis v583 at 2.52 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 1VPY _cell.length_a 114.079 _cell.length_b 114.079 _cell.length_c 52.307 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VPY _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN (hypothetical protein EF0366)' 34099.203 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHH(MSE)IRLGLTSFSEHDYLTGKKRSTLYEYASHLPLVE(MSE)DTAYYGIPPKERVAEWVKAVP ENFRFV(MSE)KVYSGISCQGEWQTYYASEEE(MSE)ITAFLES(MSE)APLIESKKLFAFLVQFSGTFGCTKENVAYLQ KIRHWFKDLPIAIELRNNSWYQPNFVKQ(MSE)LQF(MSE)KENQFSLVIVDEPQIPTNPVPFYPYVTNPNLVLFRFHGR NAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLK(MSE)SQEAKEVGVIFNNNSGGDAAENALQ(MSE)QKVLNLSYDD LNPKQLDLF ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMIRLGLTSFSEHDYLTGKKRSTLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFRFVMKVYSG ISCQGEWQTYYASEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENVAYLQKIRHWFKDLPIAIELRNNSWYQPN FVKQMLQFMKENQFSLVIVDEPQIPTNPVPFYPYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEA VLKMSQEAKEVGVIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 357242 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 ILE n 1 15 ARG n 1 16 LEU n 1 17 GLY n 1 18 LEU n 1 19 THR n 1 20 SER n 1 21 PHE n 1 22 SER n 1 23 GLU n 1 24 HIS n 1 25 ASP n 1 26 TYR n 1 27 LEU n 1 28 THR n 1 29 GLY n 1 30 LYS n 1 31 LYS n 1 32 ARG n 1 33 SER n 1 34 THR n 1 35 LEU n 1 36 TYR n 1 37 GLU n 1 38 TYR n 1 39 ALA n 1 40 SER n 1 41 HIS n 1 42 LEU n 1 43 PRO n 1 44 LEU n 1 45 VAL n 1 46 GLU n 1 47 MSE n 1 48 ASP n 1 49 THR n 1 50 ALA n 1 51 TYR n 1 52 TYR n 1 53 GLY n 1 54 ILE n 1 55 PRO n 1 56 PRO n 1 57 LYS n 1 58 GLU n 1 59 ARG n 1 60 VAL n 1 61 ALA n 1 62 GLU n 1 63 TRP n 1 64 VAL n 1 65 LYS n 1 66 ALA n 1 67 VAL n 1 68 PRO n 1 69 GLU n 1 70 ASN n 1 71 PHE n 1 72 ARG n 1 73 PHE n 1 74 VAL n 1 75 MSE n 1 76 LYS n 1 77 VAL n 1 78 TYR n 1 79 SER n 1 80 GLY n 1 81 ILE n 1 82 SER n 1 83 CYS n 1 84 GLN n 1 85 GLY n 1 86 GLU n 1 87 TRP n 1 88 GLN n 1 89 THR n 1 90 TYR n 1 91 TYR n 1 92 ALA n 1 93 SER n 1 94 GLU n 1 95 GLU n 1 96 GLU n 1 97 MSE n 1 98 ILE n 1 99 THR n 1 100 ALA n 1 101 PHE n 1 102 LEU n 1 103 GLU n 1 104 SER n 1 105 MSE n 1 106 ALA n 1 107 PRO n 1 108 LEU n 1 109 ILE n 1 110 GLU n 1 111 SER n 1 112 LYS n 1 113 LYS n 1 114 LEU n 1 115 PHE n 1 116 ALA n 1 117 PHE n 1 118 LEU n 1 119 VAL n 1 120 GLN n 1 121 PHE n 1 122 SER n 1 123 GLY n 1 124 THR n 1 125 PHE n 1 126 GLY n 1 127 CYS n 1 128 THR n 1 129 LYS n 1 130 GLU n 1 131 ASN n 1 132 VAL n 1 133 ALA n 1 134 TYR n 1 135 LEU n 1 136 GLN n 1 137 LYS n 1 138 ILE n 1 139 ARG n 1 140 HIS n 1 141 TRP n 1 142 PHE n 1 143 LYS n 1 144 ASP n 1 145 LEU n 1 146 PRO n 1 147 ILE n 1 148 ALA n 1 149 ILE n 1 150 GLU n 1 151 LEU n 1 152 ARG n 1 153 ASN n 1 154 ASN n 1 155 SER n 1 156 TRP n 1 157 TYR n 1 158 GLN n 1 159 PRO n 1 160 ASN n 1 161 PHE n 1 162 VAL n 1 163 LYS n 1 164 GLN n 1 165 MSE n 1 166 LEU n 1 167 GLN n 1 168 PHE n 1 169 MSE n 1 170 LYS n 1 171 GLU n 1 172 ASN n 1 173 GLN n 1 174 PHE n 1 175 SER n 1 176 LEU n 1 177 VAL n 1 178 ILE n 1 179 VAL n 1 180 ASP n 1 181 GLU n 1 182 PRO n 1 183 GLN n 1 184 ILE n 1 185 PRO n 1 186 THR n 1 187 ASN n 1 188 PRO n 1 189 VAL n 1 190 PRO n 1 191 PHE n 1 192 TYR n 1 193 PRO n 1 194 TYR n 1 195 VAL n 1 196 THR n 1 197 ASN n 1 198 PRO n 1 199 ASN n 1 200 LEU n 1 201 VAL n 1 202 LEU n 1 203 PHE n 1 204 ARG n 1 205 PHE n 1 206 HIS n 1 207 GLY n 1 208 ARG n 1 209 ASN n 1 210 ALA n 1 211 ALA n 1 212 GLY n 1 213 TRP n 1 214 LEU n 1 215 ALA n 1 216 ASN n 1 217 ASP n 1 218 ALA n 1 219 GLU n 1 220 TRP n 1 221 ARG n 1 222 LYS n 1 223 LYS n 1 224 ARG n 1 225 THR n 1 226 LEU n 1 227 TYR n 1 228 HIS n 1 229 TYR n 1 230 ASN n 1 231 THR n 1 232 GLN n 1 233 GLU n 1 234 ILE n 1 235 ALA n 1 236 ASP n 1 237 LEU n 1 238 SER n 1 239 GLU n 1 240 ALA n 1 241 VAL n 1 242 LEU n 1 243 LYS n 1 244 MSE n 1 245 SER n 1 246 GLN n 1 247 GLU n 1 248 ALA n 1 249 LYS n 1 250 GLU n 1 251 VAL n 1 252 GLY n 1 253 VAL n 1 254 ILE n 1 255 PHE n 1 256 ASN n 1 257 ASN n 1 258 ASN n 1 259 SER n 1 260 GLY n 1 261 GLY n 1 262 ASP n 1 263 ALA n 1 264 ALA n 1 265 GLU n 1 266 ASN n 1 267 ALA n 1 268 LEU n 1 269 GLN n 1 270 MSE n 1 271 GLN n 1 272 LYS n 1 273 VAL n 1 274 LEU n 1 275 ASN n 1 276 LEU n 1 277 SER n 1 278 TYR n 1 279 ASP n 1 280 ASP n 1 281 LEU n 1 282 ASN n 1 283 PRO n 1 284 LYS n 1 285 GLN n 1 286 LEU n 1 287 ASP n 1 288 LEU n 1 289 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Enterococcus _entity_src_gen.pdbx_gene_src_gene ef0366 _entity_src_gen.gene_src_species 'Enterococcus faecalis' _entity_src_gen.gene_src_strain V583 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Enterococcus faecalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226185 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NP_814157 _struct_ref.pdbx_db_accession 29375004 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIRLGLTSFSEHDYLTGKKRSTLYEYASHLPLVEMDTAYYGIPPKERVAEWVKAVPENFRFVMKVYSGISCQGEWQTYYA SEEEMITAFLESMAPLIESKKLFAFLVQFSGTFGCTKENVAYLQKIRHWFKDLPIAIELRNNSWYQPNFVKQMLQFMKEN QFSLVIVDEPQIPTNPVPFYPYVTNPNLVLFRFHGRNAAGWLANDAEWRKKRTLYHYNTQEIADLSEAVLKMSQEAKEVG VIFNNNSGGDAAENALQMQKVLNLSYDDLNPKQLDLF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VPY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 289 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 29375004 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 277 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 277 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VPY MSE A 1 ? GB 29375004 ? ? 'expression tag' -11 1 1 1VPY GLY A 2 ? GB 29375004 ? ? 'expression tag' -10 2 1 1VPY SER A 3 ? GB 29375004 ? ? 'expression tag' -9 3 1 1VPY ASP A 4 ? GB 29375004 ? ? 'expression tag' -8 4 1 1VPY LYS A 5 ? GB 29375004 ? ? 'expression tag' -7 5 1 1VPY ILE A 6 ? GB 29375004 ? ? 'expression tag' -6 6 1 1VPY HIS A 7 ? GB 29375004 ? ? 'expression tag' -5 7 1 1VPY HIS A 8 ? GB 29375004 ? ? 'expression tag' -4 8 1 1VPY HIS A 9 ? GB 29375004 ? ? 'expression tag' -3 9 1 1VPY HIS A 10 ? GB 29375004 ? ? 'expression tag' -2 10 1 1VPY HIS A 11 ? GB 29375004 ? ? 'expression tag' -1 11 1 1VPY HIS A 12 ? GB 29375004 ? ? 'expression tag' 0 12 1 1VPY MSE A 13 ? GB 29375004 MET 1 'modified residue' 1 13 1 1VPY MSE A 47 ? GB 29375004 MET 35 'modified residue' 35 14 1 1VPY MSE A 75 ? GB 29375004 MET 63 'modified residue' 63 15 1 1VPY MSE A 97 ? GB 29375004 MET 85 'modified residue' 85 16 1 1VPY MSE A 105 ? GB 29375004 MET 93 'modified residue' 93 17 1 1VPY MSE A 165 ? GB 29375004 MET 153 'modified residue' 153 18 1 1VPY MSE A 169 ? GB 29375004 MET 157 'modified residue' 157 19 1 1VPY MSE A 244 ? GB 29375004 MET 232 'modified residue' 232 20 1 1VPY MSE A 270 ? GB 29375004 MET 258 'modified residue' 258 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1VPY # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 63.91 _exptl_crystal.density_Matthews 3.44 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP, NANODROP' _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '10.0% PEG-3000, 0.2M Zn(OAc)2, 0.1M Acetate, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K, pH 4.5' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2004-08-27 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979694 1.0 2 0.979571 1.0 3 1.019859 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_wavelength_list '0.979694, 0.979571, 1.019859' # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.520 _reflns.d_resolution_low 28.52 _reflns.number_obs 13332 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 9.1 _reflns.B_iso_Wilson_estimate 53.06 _reflns.pdbx_redundancy 6.5 _reflns.pdbx_Rsym_value 0.18 _reflns.entry_id 1VPY _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.52 _reflns_shell.d_res_low 2.66 _reflns_shell.percent_possible_all 100.0 _reflns_shell.pdbx_Rsym_value 0.01038 _reflns_shell.pdbx_redundancy 6.5 _reflns_shell.number_unique_all 1939 _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.52 _refine.ls_d_res_low 28.52 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 12658 _refine.ls_number_reflns_R_free 657 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_percent_reflns_obs 99.89 _refine.ls_R_factor_obs 0.22652 _refine.ls_R_factor_R_work 0.22493 _refine.ls_R_factor_R_free 0.25697 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 38.918 _refine.aniso_B[1][1] -2.01 _refine.aniso_B[2][2] -2.01 _refine.aniso_B[3][3] 3.02 _refine.aniso_B[1][2] -1.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details ;1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2) ELECTRON DENSITY IN TWO REGIONS, RESIDUES 11-19 AND 202-209 IS AMBIGUOUS AND THE STRUCTURE WAS NOT MODELED IN THESE REGIONS. 3) THE ELECTRON DENSITY FOR THE SIDECHAIN OF CYS 71 INDICATES AN UNIDENTIFIED COVALENT MODIFICATION. 4) THE CRYSTALLIZATION CONTAINS 0.2M ZINC ACETATE; THEREFORE, SEVERAL ZN IONS WERE MODELED INTO ELECTRON DENSITY WITHIN COORDINATION DISTANCE OF POTENTIAL SIDECHAIN LIGANDS (I.E. HISTIDINE AND GLUTAMIC ACID). ; _refine.pdbx_overall_ESU_R 0.389 _refine.pdbx_overall_ESU_R_Free 0.265 _refine.overall_SU_ML 0.232 _refine.overall_SU_B 21.487 _refine.correlation_coeff_Fo_to_Fc 0.920 _refine.correlation_coeff_Fo_to_Fc_free 0.892 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1VPY _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1998 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 2043 _refine_hist.d_res_high 2.52 _refine_hist.d_res_low 28.52 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2061 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2799 1.306 1.933 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 248 6.340 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 100 37.524 24.500 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 315 15.235 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 23.097 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 303 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1594 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 929 0.197 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 92 0.123 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 32 0.155 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 3 0.262 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1281 0.383 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2019 0.614 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 899 1.246 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 780 1.653 4.500 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1396 0.307 0.200 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.520 _refine_ls_shell.d_res_low 2.586 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.number_reflns_R_work 930 _refine_ls_shell.R_factor_R_work 0.306 _refine_ls_shell.percent_reflns_R_free 4.81 _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.R_factor_R_free 0.416 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1VPY _struct.title 'CRYSTAL STRUCTURE OF a DUF72 family protein (EF0366) FROM ENTEROCOCCUS FAECALIS V583 AT 2.52 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;TIM ALPHA/BETA BARREL FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 1VPY # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 34 ? LEU A 42 ? THR A 22 LEU A 30 1 ? 9 HELX_P HELX_P2 2 ASP A 48 ? GLY A 53 ? ASP A 36 GLY A 41 1 ? 6 HELX_P HELX_P3 3 PRO A 56 ? ALA A 66 ? PRO A 44 ALA A 54 1 ? 11 HELX_P HELX_P4 4 GLU A 86 ? TYR A 90 ? GLU A 74 TYR A 78 5 ? 5 HELX_P HELX_P5 5 SER A 93 ? MSE A 105 ? SER A 81 MSE A 93 1 ? 13 HELX_P HELX_P6 6 MSE A 105 ? GLU A 110 ? MSE A 93 GLU A 98 1 ? 6 HELX_P HELX_P7 7 THR A 128 ? PHE A 142 ? THR A 116 PHE A 130 1 ? 15 HELX_P HELX_P8 8 ASN A 153 ? GLN A 158 ? ASN A 141 GLN A 146 5 ? 6 HELX_P HELX_P9 9 PHE A 161 ? ASN A 172 ? PHE A 149 ASN A 160 1 ? 12 HELX_P HELX_P10 10 ASN A 230 ? GLN A 246 ? ASN A 218 GLN A 234 1 ? 17 HELX_P HELX_P11 11 SER A 259 ? LEU A 274 ? SER A 247 LEU A 262 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A ILE 14 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A GLU 46 C ? ? ? 1_555 A MSE 47 N ? ? A GLU 34 A MSE 35 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale4 covale both ? A MSE 47 C ? ? ? 1_555 A ASP 48 N ? ? A MSE 35 A ASP 36 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale5 covale both ? A VAL 74 C ? ? ? 1_555 A MSE 75 N ? ? A VAL 62 A MSE 63 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale6 covale both ? A MSE 75 C ? ? ? 1_555 A LYS 76 N ? ? A MSE 63 A LYS 64 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale7 covale none ? A CYS 83 SG ? ? ? 1_555 F UNL . C1 ? ? A CYS 71 A UNL 300 1_555 ? ? ? ? ? ? ? 1.727 ? ? covale8 covale both ? A GLU 96 C ? ? ? 1_555 A MSE 97 N ? ? A GLU 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? A MSE 97 C ? ? ? 1_555 A ILE 98 N ? ? A MSE 85 A ILE 86 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? A SER 104 C ? ? ? 1_555 A MSE 105 N ? ? A SER 92 A MSE 93 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale11 covale both ? A MSE 105 C ? ? ? 1_555 A ALA 106 N ? ? A MSE 93 A ALA 94 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale12 covale both ? A GLN 164 C ? ? ? 1_555 A MSE 165 N ? ? A GLN 152 A MSE 153 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale13 covale both ? A MSE 165 C ? ? ? 1_555 A LEU 166 N ? ? A MSE 153 A LEU 154 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale14 covale both ? A PHE 168 C ? ? ? 1_555 A MSE 169 N ? ? A PHE 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale15 covale both ? A MSE 169 C ? ? ? 1_555 A LYS 170 N ? ? A MSE 157 A LYS 158 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale16 covale both ? A LYS 243 C ? ? ? 1_555 A MSE 244 N ? ? A LYS 231 A MSE 232 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale17 covale both ? A MSE 244 C ? ? ? 1_555 A SER 245 N ? ? A MSE 232 A SER 233 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale18 covale both ? A GLN 269 C ? ? ? 1_555 A MSE 270 N ? ? A GLN 257 A MSE 258 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale19 covale both ? A MSE 270 C ? ? ? 1_555 A GLN 271 N ? ? A MSE 258 A GLN 259 1_555 ? ? ? ? ? ? ? 1.327 ? ? metalc1 metalc ? ? A HIS 10 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS -2 A ZN 279 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc2 metalc ? ? A HIS 12 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 0 A ZN 279 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc3 metalc ? ? A GLU 37 OE1 ? ? ? 1_555 E ZN . ZN ? ? A GLU 25 A ZN 281 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc4 metalc ? ? A HIS 41 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 29 A ZN 281 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc5 metalc ? ? A HIS 140 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 128 A ZN 280 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc6 metalc ? ? A HIS 228 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 216 A ZN 278 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc7 metalc ? ? A ASP 262 OD2 ? ? ? 5_555 C ZN . ZN ? ? A ASP 250 A ZN 279 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc8 metalc ? ? C ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 279 A HOH 330 5_555 ? ? ? ? ? ? ? 2.339 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 175 ? LEU A 176 ? SER A 163 LEU A 164 A 2 ILE A 147 ? GLU A 150 ? ILE A 135 GLU A 138 A 3 LEU A 114 ? GLN A 120 ? LEU A 102 GLN A 108 A 4 ARG A 72 ? LYS A 76 ? ARG A 60 LYS A 64 A 5 LEU A 44 ? MSE A 47 ? LEU A 32 MSE A 35 A 6 MSE A 13 ? LEU A 18 ? MSE A 1 LEU A 6 A 7 GLU A 250 ? PHE A 255 ? GLU A 238 PHE A 243 A 8 VAL A 201 ? PHE A 205 ? VAL A 189 PHE A 193 A 9 ILE A 178 ? ASP A 180 ? ILE A 166 ASP A 168 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 175 ? O SER A 163 N ILE A 147 ? N ILE A 135 A 2 3 O ALA A 148 ? O ALA A 136 N PHE A 117 ? N PHE A 105 A 3 4 O PHE A 115 ? O PHE A 103 N PHE A 73 ? N PHE A 61 A 4 5 O VAL A 74 ? O VAL A 62 N VAL A 45 ? N VAL A 33 A 5 6 O GLU A 46 ? O GLU A 34 N LEU A 18 ? N LEU A 6 A 6 7 N MSE A 13 ? N MSE A 1 O VAL A 251 ? O VAL A 239 A 7 8 O GLY A 252 ? O GLY A 240 N PHE A 203 ? N PHE A 191 A 8 9 O LEU A 202 ? O LEU A 190 N ILE A 178 ? N ILE A 166 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 278 ? 2 'BINDING SITE FOR RESIDUE ZN A 278' AC2 Software A ZN 279 ? 5 'BINDING SITE FOR RESIDUE ZN A 279' AC3 Software A ZN 280 ? 1 'BINDING SITE FOR RESIDUE ZN A 280' AC4 Software A ZN 281 ? 3 'BINDING SITE FOR RESIDUE ZN A 281' AC5 Software A UNL 300 ? 1 'BINDING SITE FOR RESIDUE UNL A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HIS A 228 ? HIS A 216 . ? 1_555 ? 2 AC1 2 GLN A 269 ? GLN A 257 . ? 1_555 ? 3 AC2 5 HIS A 10 ? HIS A -2 . ? 1_555 ? 4 AC2 5 HIS A 12 ? HIS A 0 . ? 1_555 ? 5 AC2 5 SER A 259 ? SER A 247 . ? 5_555 ? 6 AC2 5 ASP A 262 ? ASP A 250 . ? 5_555 ? 7 AC2 5 HOH G . ? HOH A 330 . ? 5_555 ? 8 AC3 1 HIS A 140 ? HIS A 128 . ? 1_555 ? 9 AC4 3 GLU A 37 ? GLU A 25 . ? 1_555 ? 10 AC4 3 HIS A 41 ? HIS A 29 . ? 1_555 ? 11 AC4 3 HOH G . ? HOH A 337 . ? 1_555 ? 12 AC5 1 CYS A 83 ? CYS A 71 . ? 1_555 ? # _atom_sites.entry_id 1VPY _atom_sites.fract_transf_matrix[1][1] 0.008766 _atom_sites.fract_transf_matrix[1][2] 0.005061 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010122 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019118 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 -3 HIS HIS A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 ILE 14 2 2 ILE ILE A . n A 1 15 ARG 15 3 3 ARG ARG A . n A 1 16 LEU 16 4 4 LEU LEU A . n A 1 17 GLY 17 5 5 GLY GLY A . n A 1 18 LEU 18 6 6 LEU LEU A . n A 1 19 THR 19 7 7 THR THR A . n A 1 20 SER 20 8 8 SER SER A . n A 1 21 PHE 21 9 9 PHE PHE A . n A 1 22 SER 22 10 10 SER SER A . n A 1 23 GLU 23 11 ? ? ? A . n A 1 24 HIS 24 12 ? ? ? A . n A 1 25 ASP 25 13 ? ? ? A . n A 1 26 TYR 26 14 ? ? ? A . n A 1 27 LEU 27 15 ? ? ? A . n A 1 28 THR 28 16 ? ? ? A . n A 1 29 GLY 29 17 ? ? ? A . n A 1 30 LYS 30 18 ? ? ? A . n A 1 31 LYS 31 19 ? ? ? A . n A 1 32 ARG 32 20 ? ? ? A . n A 1 33 SER 33 21 21 SER SER A . n A 1 34 THR 34 22 22 THR THR A . n A 1 35 LEU 35 23 23 LEU LEU A . n A 1 36 TYR 36 24 24 TYR TYR A . n A 1 37 GLU 37 25 25 GLU GLU A . n A 1 38 TYR 38 26 26 TYR TYR A . n A 1 39 ALA 39 27 27 ALA ALA A . n A 1 40 SER 40 28 28 SER SER A . n A 1 41 HIS 41 29 29 HIS HIS A . n A 1 42 LEU 42 30 30 LEU LEU A . n A 1 43 PRO 43 31 31 PRO PRO A . n A 1 44 LEU 44 32 32 LEU LEU A . n A 1 45 VAL 45 33 33 VAL VAL A . n A 1 46 GLU 46 34 34 GLU GLU A . n A 1 47 MSE 47 35 35 MSE MSE A . n A 1 48 ASP 48 36 36 ASP ASP A . n A 1 49 THR 49 37 37 THR THR A . n A 1 50 ALA 50 38 38 ALA ALA A . n A 1 51 TYR 51 39 39 TYR TYR A . n A 1 52 TYR 52 40 40 TYR TYR A . n A 1 53 GLY 53 41 41 GLY GLY A . n A 1 54 ILE 54 42 42 ILE ILE A . n A 1 55 PRO 55 43 43 PRO PRO A . n A 1 56 PRO 56 44 44 PRO PRO A . n A 1 57 LYS 57 45 45 LYS LYS A . n A 1 58 GLU 58 46 46 GLU GLU A . n A 1 59 ARG 59 47 47 ARG ARG A . n A 1 60 VAL 60 48 48 VAL VAL A . n A 1 61 ALA 61 49 49 ALA ALA A . n A 1 62 GLU 62 50 50 GLU GLU A . n A 1 63 TRP 63 51 51 TRP TRP A . n A 1 64 VAL 64 52 52 VAL VAL A . n A 1 65 LYS 65 53 53 LYS LYS A . n A 1 66 ALA 66 54 54 ALA ALA A . n A 1 67 VAL 67 55 55 VAL VAL A . n A 1 68 PRO 68 56 56 PRO PRO A . n A 1 69 GLU 69 57 57 GLU GLU A . n A 1 70 ASN 70 58 58 ASN ASN A . n A 1 71 PHE 71 59 59 PHE PHE A . n A 1 72 ARG 72 60 60 ARG ARG A . n A 1 73 PHE 73 61 61 PHE PHE A . n A 1 74 VAL 74 62 62 VAL VAL A . n A 1 75 MSE 75 63 63 MSE MSE A . n A 1 76 LYS 76 64 64 LYS LYS A . n A 1 77 VAL 77 65 65 VAL VAL A . n A 1 78 TYR 78 66 66 TYR TYR A . n A 1 79 SER 79 67 67 SER SER A . n A 1 80 GLY 80 68 68 GLY GLY A . n A 1 81 ILE 81 69 69 ILE ILE A . n A 1 82 SER 82 70 70 SER SER A . n A 1 83 CYS 83 71 71 CYS CYS A . n A 1 84 GLN 84 72 72 GLN GLN A . n A 1 85 GLY 85 73 73 GLY GLY A . n A 1 86 GLU 86 74 74 GLU GLU A . n A 1 87 TRP 87 75 75 TRP TRP A . n A 1 88 GLN 88 76 76 GLN GLN A . n A 1 89 THR 89 77 77 THR THR A . n A 1 90 TYR 90 78 78 TYR TYR A . n A 1 91 TYR 91 79 79 TYR TYR A . n A 1 92 ALA 92 80 80 ALA ALA A . n A 1 93 SER 93 81 81 SER SER A . n A 1 94 GLU 94 82 82 GLU GLU A . n A 1 95 GLU 95 83 83 GLU GLU A . n A 1 96 GLU 96 84 84 GLU GLU A . n A 1 97 MSE 97 85 85 MSE MSE A . n A 1 98 ILE 98 86 86 ILE ILE A . n A 1 99 THR 99 87 87 THR THR A . n A 1 100 ALA 100 88 88 ALA ALA A . n A 1 101 PHE 101 89 89 PHE PHE A . n A 1 102 LEU 102 90 90 LEU LEU A . n A 1 103 GLU 103 91 91 GLU GLU A . n A 1 104 SER 104 92 92 SER SER A . n A 1 105 MSE 105 93 93 MSE MSE A . n A 1 106 ALA 106 94 94 ALA ALA A . n A 1 107 PRO 107 95 95 PRO PRO A . n A 1 108 LEU 108 96 96 LEU LEU A . n A 1 109 ILE 109 97 97 ILE ILE A . n A 1 110 GLU 110 98 98 GLU GLU A . n A 1 111 SER 111 99 99 SER SER A . n A 1 112 LYS 112 100 100 LYS LYS A . n A 1 113 LYS 113 101 101 LYS LYS A . n A 1 114 LEU 114 102 102 LEU LEU A . n A 1 115 PHE 115 103 103 PHE PHE A . n A 1 116 ALA 116 104 104 ALA ALA A . n A 1 117 PHE 117 105 105 PHE PHE A . n A 1 118 LEU 118 106 106 LEU LEU A . n A 1 119 VAL 119 107 107 VAL VAL A . n A 1 120 GLN 120 108 108 GLN GLN A . n A 1 121 PHE 121 109 109 PHE PHE A . n A 1 122 SER 122 110 110 SER SER A . n A 1 123 GLY 123 111 111 GLY GLY A . n A 1 124 THR 124 112 112 THR THR A . n A 1 125 PHE 125 113 113 PHE PHE A . n A 1 126 GLY 126 114 114 GLY GLY A . n A 1 127 CYS 127 115 115 CYS CYS A . n A 1 128 THR 128 116 116 THR THR A . n A 1 129 LYS 129 117 117 LYS LYS A . n A 1 130 GLU 130 118 118 GLU GLU A . n A 1 131 ASN 131 119 119 ASN ASN A . n A 1 132 VAL 132 120 120 VAL VAL A . n A 1 133 ALA 133 121 121 ALA ALA A . n A 1 134 TYR 134 122 122 TYR TYR A . n A 1 135 LEU 135 123 123 LEU LEU A . n A 1 136 GLN 136 124 124 GLN GLN A . n A 1 137 LYS 137 125 125 LYS LYS A . n A 1 138 ILE 138 126 126 ILE ILE A . n A 1 139 ARG 139 127 127 ARG ARG A . n A 1 140 HIS 140 128 128 HIS HIS A . n A 1 141 TRP 141 129 129 TRP TRP A . n A 1 142 PHE 142 130 130 PHE PHE A . n A 1 143 LYS 143 131 131 LYS LYS A . n A 1 144 ASP 144 132 132 ASP ASP A . n A 1 145 LEU 145 133 133 LEU LEU A . n A 1 146 PRO 146 134 134 PRO PRO A . n A 1 147 ILE 147 135 135 ILE ILE A . n A 1 148 ALA 148 136 136 ALA ALA A . n A 1 149 ILE 149 137 137 ILE ILE A . n A 1 150 GLU 150 138 138 GLU GLU A . n A 1 151 LEU 151 139 139 LEU LEU A . n A 1 152 ARG 152 140 140 ARG ARG A . n A 1 153 ASN 153 141 141 ASN ASN A . n A 1 154 ASN 154 142 142 ASN ASN A . n A 1 155 SER 155 143 143 SER SER A . n A 1 156 TRP 156 144 144 TRP TRP A . n A 1 157 TYR 157 145 145 TYR TYR A . n A 1 158 GLN 158 146 146 GLN GLN A . n A 1 159 PRO 159 147 147 PRO PRO A . n A 1 160 ASN 160 148 148 ASN ASN A . n A 1 161 PHE 161 149 149 PHE PHE A . n A 1 162 VAL 162 150 150 VAL VAL A . n A 1 163 LYS 163 151 151 LYS LYS A . n A 1 164 GLN 164 152 152 GLN GLN A . n A 1 165 MSE 165 153 153 MSE MSE A . n A 1 166 LEU 166 154 154 LEU LEU A . n A 1 167 GLN 167 155 155 GLN GLN A . n A 1 168 PHE 168 156 156 PHE PHE A . n A 1 169 MSE 169 157 157 MSE MSE A . n A 1 170 LYS 170 158 158 LYS LYS A . n A 1 171 GLU 171 159 159 GLU GLU A . n A 1 172 ASN 172 160 160 ASN ASN A . n A 1 173 GLN 173 161 161 GLN GLN A . n A 1 174 PHE 174 162 162 PHE PHE A . n A 1 175 SER 175 163 163 SER SER A . n A 1 176 LEU 176 164 164 LEU LEU A . n A 1 177 VAL 177 165 165 VAL VAL A . n A 1 178 ILE 178 166 166 ILE ILE A . n A 1 179 VAL 179 167 167 VAL VAL A . n A 1 180 ASP 180 168 168 ASP ASP A . n A 1 181 GLU 181 169 169 GLU GLU A . n A 1 182 PRO 182 170 170 PRO PRO A . n A 1 183 GLN 183 171 171 GLN GLN A . n A 1 184 ILE 184 172 172 ILE ILE A . n A 1 185 PRO 185 173 173 PRO PRO A . n A 1 186 THR 186 174 174 THR THR A . n A 1 187 ASN 187 175 175 ASN ASN A . n A 1 188 PRO 188 176 176 PRO PRO A . n A 1 189 VAL 189 177 177 VAL VAL A . n A 1 190 PRO 190 178 178 PRO PRO A . n A 1 191 PHE 191 179 179 PHE PHE A . n A 1 192 TYR 192 180 180 TYR TYR A . n A 1 193 PRO 193 181 181 PRO PRO A . n A 1 194 TYR 194 182 182 TYR TYR A . n A 1 195 VAL 195 183 183 VAL VAL A . n A 1 196 THR 196 184 184 THR THR A . n A 1 197 ASN 197 185 185 ASN ASN A . n A 1 198 PRO 198 186 186 PRO PRO A . n A 1 199 ASN 199 187 187 ASN ASN A . n A 1 200 LEU 200 188 188 LEU LEU A . n A 1 201 VAL 201 189 189 VAL VAL A . n A 1 202 LEU 202 190 190 LEU LEU A . n A 1 203 PHE 203 191 191 PHE PHE A . n A 1 204 ARG 204 192 192 ARG ARG A . n A 1 205 PHE 205 193 193 PHE PHE A . n A 1 206 HIS 206 194 194 HIS HIS A . n A 1 207 GLY 207 195 195 GLY GLY A . n A 1 208 ARG 208 196 196 ARG ARG A . n A 1 209 ASN 209 197 197 ASN ASN A . n A 1 210 ALA 210 198 198 ALA ALA A . n A 1 211 ALA 211 199 199 ALA ALA A . n A 1 212 GLY 212 200 200 GLY GLY A . n A 1 213 TRP 213 201 201 TRP TRP A . n A 1 214 LEU 214 202 ? ? ? A . n A 1 215 ALA 215 203 ? ? ? A . n A 1 216 ASN 216 204 ? ? ? A . n A 1 217 ASP 217 205 ? ? ? A . n A 1 218 ALA 218 206 ? ? ? A . n A 1 219 GLU 219 207 ? ? ? A . n A 1 220 TRP 220 208 ? ? ? A . n A 1 221 ARG 221 209 ? ? ? A . n A 1 222 LYS 222 210 210 LYS LYS A . n A 1 223 LYS 223 211 211 LYS LYS A . n A 1 224 ARG 224 212 212 ARG ARG A . n A 1 225 THR 225 213 213 THR THR A . n A 1 226 LEU 226 214 214 LEU LEU A . n A 1 227 TYR 227 215 215 TYR TYR A . n A 1 228 HIS 228 216 216 HIS HIS A . n A 1 229 TYR 229 217 217 TYR TYR A . n A 1 230 ASN 230 218 218 ASN ASN A . n A 1 231 THR 231 219 219 THR THR A . n A 1 232 GLN 232 220 220 GLN GLN A . n A 1 233 GLU 233 221 221 GLU GLU A . n A 1 234 ILE 234 222 222 ILE ILE A . n A 1 235 ALA 235 223 223 ALA ALA A . n A 1 236 ASP 236 224 224 ASP ASP A . n A 1 237 LEU 237 225 225 LEU LEU A . n A 1 238 SER 238 226 226 SER SER A . n A 1 239 GLU 239 227 227 GLU GLU A . n A 1 240 ALA 240 228 228 ALA ALA A . n A 1 241 VAL 241 229 229 VAL VAL A . n A 1 242 LEU 242 230 230 LEU LEU A . n A 1 243 LYS 243 231 231 LYS LYS A . n A 1 244 MSE 244 232 232 MSE MSE A . n A 1 245 SER 245 233 233 SER SER A . n A 1 246 GLN 246 234 234 GLN GLN A . n A 1 247 GLU 247 235 235 GLU GLU A . n A 1 248 ALA 248 236 236 ALA ALA A . n A 1 249 LYS 249 237 237 LYS LYS A . n A 1 250 GLU 250 238 238 GLU GLU A . n A 1 251 VAL 251 239 239 VAL VAL A . n A 1 252 GLY 252 240 240 GLY GLY A . n A 1 253 VAL 253 241 241 VAL VAL A . n A 1 254 ILE 254 242 242 ILE ILE A . n A 1 255 PHE 255 243 243 PHE PHE A . n A 1 256 ASN 256 244 244 ASN ASN A . n A 1 257 ASN 257 245 245 ASN ASN A . n A 1 258 ASN 258 246 246 ASN ASN A . n A 1 259 SER 259 247 247 SER SER A . n A 1 260 GLY 260 248 248 GLY GLY A . n A 1 261 GLY 261 249 249 GLY GLY A . n A 1 262 ASP 262 250 250 ASP ASP A . n A 1 263 ALA 263 251 251 ALA ALA A . n A 1 264 ALA 264 252 252 ALA ALA A . n A 1 265 GLU 265 253 253 GLU GLU A . n A 1 266 ASN 266 254 254 ASN ASN A . n A 1 267 ALA 267 255 255 ALA ALA A . n A 1 268 LEU 268 256 256 LEU LEU A . n A 1 269 GLN 269 257 257 GLN GLN A . n A 1 270 MSE 270 258 258 MSE MSE A . n A 1 271 GLN 271 259 259 GLN GLN A . n A 1 272 LYS 272 260 260 LYS LYS A . n A 1 273 VAL 273 261 261 VAL VAL A . n A 1 274 LEU 274 262 262 LEU LEU A . n A 1 275 ASN 275 263 263 ASN ASN A . n A 1 276 LEU 276 264 264 LEU LEU A . n A 1 277 SER 277 265 265 SER SER A . n A 1 278 TYR 278 266 ? ? ? A . n A 1 279 ASP 279 267 ? ? ? A . n A 1 280 ASP 280 268 ? ? ? A . n A 1 281 LEU 281 269 ? ? ? A . n A 1 282 ASN 282 270 ? ? ? A . n A 1 283 PRO 283 271 ? ? ? A . n A 1 284 LYS 284 272 ? ? ? A . n A 1 285 GLN 285 273 ? ? ? A . n A 1 286 LEU 286 274 ? ? ? A . n A 1 287 ASP 287 275 ? ? ? A . n A 1 288 LEU 288 276 ? ? ? A . n A 1 289 PHE 289 277 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 278 1 ZN ZN A . C 2 ZN 1 279 2 ZN ZN A . D 2 ZN 1 280 3 ZN ZN A . E 2 ZN 1 281 4 ZN ZN A . F 3 UNL 1 300 300 UNL UNL A . G 4 HOH 1 301 5 HOH HOH A . G 4 HOH 2 302 6 HOH HOH A . G 4 HOH 3 303 7 HOH HOH A . G 4 HOH 4 304 8 HOH HOH A . G 4 HOH 5 305 9 HOH HOH A . G 4 HOH 6 306 10 HOH HOH A . G 4 HOH 7 307 11 HOH HOH A . G 4 HOH 8 308 12 HOH HOH A . G 4 HOH 9 309 13 HOH HOH A . G 4 HOH 10 310 14 HOH HOH A . G 4 HOH 11 311 15 HOH HOH A . G 4 HOH 12 312 16 HOH HOH A . G 4 HOH 13 313 17 HOH HOH A . G 4 HOH 14 314 18 HOH HOH A . G 4 HOH 15 315 19 HOH HOH A . G 4 HOH 16 316 20 HOH HOH A . G 4 HOH 17 317 21 HOH HOH A . G 4 HOH 18 318 22 HOH HOH A . G 4 HOH 19 319 23 HOH HOH A . G 4 HOH 20 320 24 HOH HOH A . G 4 HOH 21 321 25 HOH HOH A . G 4 HOH 22 322 26 HOH HOH A . G 4 HOH 23 323 27 HOH HOH A . G 4 HOH 24 324 28 HOH HOH A . G 4 HOH 25 325 29 HOH HOH A . G 4 HOH 26 326 30 HOH HOH A . G 4 HOH 27 327 31 HOH HOH A . G 4 HOH 28 328 32 HOH HOH A . G 4 HOH 29 329 33 HOH HOH A . G 4 HOH 30 330 34 HOH HOH A . G 4 HOH 31 331 35 HOH HOH A . G 4 HOH 32 332 36 HOH HOH A . G 4 HOH 33 333 37 HOH HOH A . G 4 HOH 34 334 38 HOH HOH A . G 4 HOH 35 335 39 HOH HOH A . G 4 HOH 36 336 40 HOH HOH A . G 4 HOH 37 337 41 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 47 A MSE 35 ? MET SELENOMETHIONINE 3 A MSE 75 A MSE 63 ? MET SELENOMETHIONINE 4 A MSE 97 A MSE 85 ? MET SELENOMETHIONINE 5 A MSE 105 A MSE 93 ? MET SELENOMETHIONINE 6 A MSE 165 A MSE 153 ? MET SELENOMETHIONINE 7 A MSE 169 A MSE 157 ? MET SELENOMETHIONINE 8 A MSE 244 A MSE 232 ? MET SELENOMETHIONINE 9 A MSE 270 A MSE 258 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 10 ? A HIS -2 ? 1_555 ZN ? C ZN . ? A ZN 279 ? 1_555 NE2 ? A HIS 12 ? A HIS 0 ? 1_555 112.0 ? 2 NE2 ? A HIS 10 ? A HIS -2 ? 1_555 ZN ? C ZN . ? A ZN 279 ? 1_555 OD2 ? A ASP 262 ? A ASP 250 ? 5_555 129.7 ? 3 NE2 ? A HIS 12 ? A HIS 0 ? 1_555 ZN ? C ZN . ? A ZN 279 ? 1_555 OD2 ? A ASP 262 ? A ASP 250 ? 5_555 93.7 ? 4 NE2 ? A HIS 10 ? A HIS -2 ? 1_555 ZN ? C ZN . ? A ZN 279 ? 1_555 O ? G HOH . ? A HOH 330 ? 5_555 103.4 ? 5 NE2 ? A HIS 12 ? A HIS 0 ? 1_555 ZN ? C ZN . ? A ZN 279 ? 1_555 O ? G HOH . ? A HOH 330 ? 5_555 105.2 ? 6 OD2 ? A ASP 262 ? A ASP 250 ? 5_555 ZN ? C ZN . ? A ZN 279 ? 1_555 O ? G HOH . ? A HOH 330 ? 5_555 110.6 ? 7 OE1 ? A GLU 37 ? A GLU 25 ? 1_555 ZN ? E ZN . ? A ZN 281 ? 1_555 NE2 ? A HIS 41 ? A HIS 29 ? 1_555 67.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-07 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' reflns_shell 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_reflns_shell.percent_possible_all' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_conn.pdbx_dist_value' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 5 'Structure model' '_struct_conn.ptnr1_symmetry' 13 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 5 'Structure model' '_struct_conn.ptnr2_symmetry' 20 5 'Structure model' '_struct_ref_seq_dif.details' 21 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 22 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 23 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 . refined 23.8536 25.6633 38.6457 0.0179 0.1276 -0.0913 -0.0589 0.0177 0.0139 14.1434 34.5063 7.0195 -21.8518 5.9860 -7.4206 -1.4270 1.1018 0.3252 -1.2573 0.1747 0.8008 3.5434 -0.9678 -0.4228 'X-RAY DIFFRACTION' 2 . refined 29.7578 32.6765 24.3682 -0.0715 -0.0981 -0.1183 0.0304 -0.0163 0.1006 3.8112 5.2299 1.8039 0.0340 -0.2925 0.0751 0.1273 -0.2142 0.0869 0.2921 0.1789 -0.5659 -0.3970 -0.0664 0.0552 'X-RAY DIFFRACTION' 3 . refined 14.8819 24.3257 31.8630 -0.0867 -0.0906 -0.1608 -0.0383 -0.0355 -0.0165 9.7998 7.8959 2.0100 -3.9190 2.0719 -1.1067 0.1650 -0.1933 0.0283 -0.3212 -0.2092 0.6452 0.0539 0.0778 -0.0638 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 9 A 22 ALL A -3 A 10 'X-RAY DIFFRACTION' ? 2 2 A 33 A 213 ALL A 21 A 201 'X-RAY DIFFRACTION' ? 3 3 A 222 A 277 ALL A 210 A 265 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' 'CCP4 4.2' ? 2 SHARP phasing . ? 3 REFMAC refinement 5.2.0005 ? 4 CCP4 'data scaling' '(SCALA)' ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A -2 ? ? -62.92 94.71 2 1 GLU A 74 ? ? -87.53 47.24 3 1 CYS A 115 ? ? -65.94 93.17 4 1 LYS A 131 ? ? 33.02 -116.29 5 1 PRO A 186 ? ? -58.95 -4.28 6 1 LEU A 188 ? ? -170.86 127.78 7 1 ARG A 212 ? ? -95.21 36.38 8 1 SER A 247 ? ? 66.53 116.44 9 1 ASN A 263 ? ? 13.22 72.74 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 45 ? CG ? A LYS 57 CG 2 1 Y 1 A LYS 45 ? CD ? A LYS 57 CD 3 1 Y 1 A LYS 45 ? CE ? A LYS 57 CE 4 1 Y 1 A LYS 45 ? NZ ? A LYS 57 NZ 5 1 Y 1 A LYS 53 ? CD ? A LYS 65 CD 6 1 Y 1 A LYS 53 ? CE ? A LYS 65 CE 7 1 Y 1 A LYS 53 ? NZ ? A LYS 65 NZ 8 1 Y 1 A GLU 91 ? CG ? A GLU 103 CG 9 1 Y 1 A GLU 91 ? CD ? A GLU 103 CD 10 1 Y 1 A GLU 91 ? OE1 ? A GLU 103 OE1 11 1 Y 1 A GLU 91 ? OE2 ? A GLU 103 OE2 12 1 Y 1 A LYS 100 ? CG ? A LYS 112 CG 13 1 Y 1 A LYS 100 ? CD ? A LYS 112 CD 14 1 Y 1 A LYS 100 ? CE ? A LYS 112 CE 15 1 Y 1 A LYS 100 ? NZ ? A LYS 112 NZ 16 1 Y 1 A LYS 117 ? CG ? A LYS 129 CG 17 1 Y 1 A LYS 117 ? CD ? A LYS 129 CD 18 1 Y 1 A LYS 117 ? CE ? A LYS 129 CE 19 1 Y 1 A LYS 117 ? NZ ? A LYS 129 NZ 20 1 Y 1 A LYS 131 ? CG ? A LYS 143 CG 21 1 Y 1 A LYS 131 ? CD ? A LYS 143 CD 22 1 Y 1 A LYS 131 ? CE ? A LYS 143 CE 23 1 Y 1 A LYS 131 ? NZ ? A LYS 143 NZ 24 1 Y 1 A GLN 146 ? CD ? A GLN 158 CD 25 1 Y 1 A GLN 146 ? OE1 ? A GLN 158 OE1 26 1 Y 1 A GLN 146 ? NE2 ? A GLN 158 NE2 27 1 Y 1 A PHE 149 ? CG ? A PHE 161 CG 28 1 Y 1 A PHE 149 ? CD1 ? A PHE 161 CD1 29 1 Y 1 A PHE 149 ? CD2 ? A PHE 161 CD2 30 1 Y 1 A PHE 149 ? CE1 ? A PHE 161 CE1 31 1 Y 1 A PHE 149 ? CE2 ? A PHE 161 CE2 32 1 Y 1 A PHE 149 ? CZ ? A PHE 161 CZ 33 1 Y 1 A LYS 211 ? CG ? A LYS 223 CG 34 1 Y 1 A LYS 211 ? CD ? A LYS 223 CD 35 1 Y 1 A LYS 211 ? CE ? A LYS 223 CE 36 1 Y 1 A LYS 211 ? NZ ? A LYS 223 NZ 37 1 Y 1 A ARG 212 ? CG ? A ARG 224 CG 38 1 Y 1 A ARG 212 ? CD ? A ARG 224 CD 39 1 Y 1 A ARG 212 ? NE ? A ARG 224 NE 40 1 Y 1 A ARG 212 ? CZ ? A ARG 224 CZ 41 1 Y 1 A ARG 212 ? NH1 ? A ARG 224 NH1 42 1 Y 1 A ARG 212 ? NH2 ? A ARG 224 NH2 43 1 Y 1 A LYS 231 ? CD ? A LYS 243 CD 44 1 Y 1 A LYS 231 ? CE ? A LYS 243 CE 45 1 Y 1 A LYS 231 ? NZ ? A LYS 243 NZ 46 1 Y 1 A LYS 237 ? CD ? A LYS 249 CD 47 1 Y 1 A LYS 237 ? CE ? A LYS 249 CE 48 1 Y 1 A LYS 237 ? NZ ? A LYS 249 NZ 49 1 Y 1 A LYS 260 ? CG ? A LYS 272 CG 50 1 Y 1 A LYS 260 ? CD ? A LYS 272 CD 51 1 Y 1 A LYS 260 ? CE ? A LYS 272 CE 52 1 Y 1 A LYS 260 ? NZ ? A LYS 272 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -11 ? A MSE 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A GLU 11 ? A GLU 23 10 1 Y 1 A HIS 12 ? A HIS 24 11 1 Y 1 A ASP 13 ? A ASP 25 12 1 Y 1 A TYR 14 ? A TYR 26 13 1 Y 1 A LEU 15 ? A LEU 27 14 1 Y 1 A THR 16 ? A THR 28 15 1 Y 1 A GLY 17 ? A GLY 29 16 1 Y 1 A LYS 18 ? A LYS 30 17 1 Y 1 A LYS 19 ? A LYS 31 18 1 Y 1 A ARG 20 ? A ARG 32 19 1 Y 1 A LEU 202 ? A LEU 214 20 1 Y 1 A ALA 203 ? A ALA 215 21 1 Y 1 A ASN 204 ? A ASN 216 22 1 Y 1 A ASP 205 ? A ASP 217 23 1 Y 1 A ALA 206 ? A ALA 218 24 1 Y 1 A GLU 207 ? A GLU 219 25 1 Y 1 A TRP 208 ? A TRP 220 26 1 Y 1 A ARG 209 ? A ARG 221 27 1 Y 1 A TYR 266 ? A TYR 278 28 1 Y 1 A ASP 267 ? A ASP 279 29 1 Y 1 A ASP 268 ? A ASP 280 30 1 Y 1 A LEU 269 ? A LEU 281 31 1 Y 1 A ASN 270 ? A ASN 282 32 1 Y 1 A PRO 271 ? A PRO 283 33 1 Y 1 A LYS 272 ? A LYS 284 34 1 Y 1 A GLN 273 ? A GLN 285 35 1 Y 1 A LEU 274 ? A LEU 286 36 1 Y 1 A ASP 275 ? A ASP 287 37 1 Y 1 A LEU 276 ? A LEU 288 38 1 Y 1 A PHE 277 ? A PHE 289 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'UNKNOWN LIGAND' UNL 4 water HOH #