HEADER TRANSFERASE 05-JAN-05 1VQV TITLE CRYSTAL STRUCTURE OF THIAMINE MONOPHOSPHATE KINASE (THIL) FROM AQUIFEX TITLE 2 AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMINE MONOPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.4.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THIL, KINASE, DIMER, PHOSPHATE, NEW YORK SGX RESEARCH CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, NYSGXRC, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 3 T1881, STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ESWARAMOORTHY,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 27-DEC-23 1VQV 1 REMARK REVDAT 4 03-FEB-21 1VQV 1 AUTHOR REMARK SEQADV LINK REVDAT 3 24-FEB-09 1VQV 1 VERSN REVDAT 2 14-NOV-06 1VQV 1 KEYWDS REMARK REVDAT 1 11-JAN-05 1VQV 0 SPRSDE 11-JAN-05 1VQV 1YAW JRNL AUTH S.ESWARAMOORTHY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF THIAMINE MONOPHOSPHATE KINASE (THIL) JRNL TITL 2 FROM AQUIFEX AEOLICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 22484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 870 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.641 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000002069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE & SHARP, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM DIHYDROGEN PHOSPHATE, SODIUM REMARK 280 CITRATE, PH 5.60, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.03000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 144.04500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.01500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 25 REMARK 465 GLU A 32 REMARK 465 TYR A 33 REMARK 465 CYS A 34 REMARK 465 GLU A 289 REMARK 465 LYS A 301 REMARK 465 GLY A 302 REMARK 465 TRP A 303 REMARK 465 LYS A 304 REMARK 465 HIS A 305 REMARK 465 PHE A 306 REMARK 465 GLY B 25 REMARK 465 TYR B 33 REMARK 465 CYS B 34 REMARK 465 SER B 35 REMARK 465 LYS B 36 REMARK 465 LYS B 301 REMARK 465 GLY B 302 REMARK 465 TRP B 303 REMARK 465 LYS B 304 REMARK 465 HIS B 305 REMARK 465 PHE B 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 470 PHE B 9 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 SER B 21 OG REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 VAL B 23 CG1 CG2 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 LYS B 296 CG CD CE NZ REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MSE A 1 O HOH A 1010 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 58 CB GLU B 58 CG 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 30 C - N - CD ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 17 -71.70 -59.01 REMARK 500 GLU A 20 78.62 64.51 REMARK 500 VAL A 49 -68.97 -109.80 REMARK 500 ALA A 145 154.03 -48.28 REMARK 500 GLN A 199 38.72 -76.69 REMARK 500 LYS A 200 -41.55 -162.07 REMARK 500 MSE A 206 154.68 173.44 REMARK 500 HIS A 268 164.30 178.72 REMARK 500 GLU A 271 40.90 -67.79 REMARK 500 ARG A 272 35.99 -160.16 REMARK 500 ASP A 278 31.74 -65.12 REMARK 500 GLU A 286 -146.47 -138.86 REMARK 500 GLU A 287 -112.91 -3.32 REMARK 500 ASP A 294 29.38 49.62 REMARK 500 GLU B 8 -82.52 -60.33 REMARK 500 GLU B 20 65.11 66.00 REMARK 500 VAL B 49 -65.10 -102.51 REMARK 500 LYS B 112 46.69 70.26 REMARK 500 ARG B 138 111.40 -170.43 REMARK 500 ALA B 145 159.25 -44.75 REMARK 500 LYS B 200 -25.46 -141.42 REMARK 500 MSE B 206 151.49 175.20 REMARK 500 LEU B 212 -73.22 -49.34 REMARK 500 ARG B 222 -5.61 -58.85 REMARK 500 ARG B 272 40.72 -94.50 REMARK 500 ASP B 278 40.32 -71.59 REMARK 500 GLU B 287 -111.24 12.89 REMARK 500 GLU B 289 -69.02 100.19 REMARK 500 ASP B 294 22.64 48.70 REMARK 500 LYS B 297 150.97 -46.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T1881 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RESIDUES GLU 58 (MOL A & MOL B) AND PO4 (1002 & 1004) REMARK 999 ARE REFINED WITH ALTERNATE CONFORMATIONS. ONE OF THE REMARK 999 CONFORMATIONS OF THE SIDE-CHAIN OF GLU 58 (MOL A AND REMARK 999 MOL B) AND PO4 (1002 & 1004) WERE ALTERNATELY PRESENT AT REMARK 999 THE SAME POSITION. DBREF 1VQV A 1 306 UNP O67883 O67883_AQUAE 1 306 DBREF 1VQV B 1 306 UNP O67883 O67883_AQUAE 1 306 SEQADV 1VQV MSE A 1 UNP O67883 MET 1 MODIFIED RESIDUE SEQADV 1VQV MSE A 169 UNP O67883 MET 169 MODIFIED RESIDUE SEQADV 1VQV MSE A 206 UNP O67883 MET 206 MODIFIED RESIDUE SEQADV 1VQV MSE A 242 UNP O67883 MET 242 MODIFIED RESIDUE SEQADV 1VQV MSE A 279 UNP O67883 MET 279 MODIFIED RESIDUE SEQADV 1VQV MSE B 1 UNP O67883 MET 1 MODIFIED RESIDUE SEQADV 1VQV MSE B 169 UNP O67883 MET 169 MODIFIED RESIDUE SEQADV 1VQV MSE B 206 UNP O67883 MET 206 MODIFIED RESIDUE SEQADV 1VQV MSE B 242 UNP O67883 MET 242 MODIFIED RESIDUE SEQADV 1VQV MSE B 279 UNP O67883 MET 279 MODIFIED RESIDUE SEQRES 1 A 306 MSE ARG LEU LYS GLU LEU GLY GLU PHE GLY LEU ILE ASP SEQRES 2 A 306 LEU ILE LYS LYS THR LEU GLU SER LYS VAL ILE GLY ASP SEQRES 3 A 306 ASP THR ALA PRO VAL GLU TYR CYS SER LYS LYS LEU LEU SEQRES 4 A 306 LEU THR THR ASP VAL LEU ASN GLU GLY VAL HIS PHE LEU SEQRES 5 A 306 ARG SER TYR ILE PRO GLU ALA VAL GLY TRP LYS ALA ILE SEQRES 6 A 306 SER VAL ASN VAL SER ASP VAL ILE ALA ASN GLY GLY LEU SEQRES 7 A 306 PRO LYS TRP ALA LEU ILE SER LEU ASN LEU PRO GLU ASP SEQRES 8 A 306 LEU GLU VAL SER TYR VAL GLU ARG PHE TYR ILE GLY VAL SEQRES 9 A 306 LYS ARG ALA CYS GLU PHE TYR LYS CYS GLU VAL VAL GLY SEQRES 10 A 306 GLY ASN ILE SER LYS SER GLU LYS ILE GLY ILE SER VAL SEQRES 11 A 306 PHE LEU VAL GLY GLU THR GLU ARG PHE VAL GLY ARG ASP SEQRES 12 A 306 GLY ALA ARG LEU GLY ASP SER VAL PHE VAL SER GLY THR SEQRES 13 A 306 LEU GLY ASP SER ARG ALA GLY LEU GLU LEU LEU LEU MSE SEQRES 14 A 306 GLU LYS GLU GLU TYR GLU PRO PHE GLU LEU ALA LEU ILE SEQRES 15 A 306 GLN ARG HIS LEU ARG PRO THR ALA ARG ILE ASP TYR VAL SEQRES 16 A 306 LYS HIS ILE GLN LYS TYR ALA ASN ALA SER MSE ASP ILE SEQRES 17 A 306 SER ASP GLY LEU VAL ALA ASP ALA ASN HIS LEU ALA GLN SEQRES 18 A 306 ARG SER GLY VAL LYS ILE GLU ILE LEU SER GLU LYS LEU SEQRES 19 A 306 PRO LEU SER ASN GLU LEU LYS MSE TYR CYS GLU LYS TYR SEQRES 20 A 306 GLY LYS ASN PRO ILE GLU TYR ALA LEU PHE GLY GLY GLU SEQRES 21 A 306 ASP TYR GLN LEU LEU PHE THR HIS PRO LYS GLU ARG TRP SEQRES 22 A 306 ASN PRO PHE LEU ASP MSE THR GLU ILE GLY ARG VAL GLU SEQRES 23 A 306 GLU GLY GLU GLY VAL PHE VAL ASP GLY LYS LYS VAL GLU SEQRES 24 A 306 PRO LYS GLY TRP LYS HIS PHE SEQRES 1 B 306 MSE ARG LEU LYS GLU LEU GLY GLU PHE GLY LEU ILE ASP SEQRES 2 B 306 LEU ILE LYS LYS THR LEU GLU SER LYS VAL ILE GLY ASP SEQRES 3 B 306 ASP THR ALA PRO VAL GLU TYR CYS SER LYS LYS LEU LEU SEQRES 4 B 306 LEU THR THR ASP VAL LEU ASN GLU GLY VAL HIS PHE LEU SEQRES 5 B 306 ARG SER TYR ILE PRO GLU ALA VAL GLY TRP LYS ALA ILE SEQRES 6 B 306 SER VAL ASN VAL SER ASP VAL ILE ALA ASN GLY GLY LEU SEQRES 7 B 306 PRO LYS TRP ALA LEU ILE SER LEU ASN LEU PRO GLU ASP SEQRES 8 B 306 LEU GLU VAL SER TYR VAL GLU ARG PHE TYR ILE GLY VAL SEQRES 9 B 306 LYS ARG ALA CYS GLU PHE TYR LYS CYS GLU VAL VAL GLY SEQRES 10 B 306 GLY ASN ILE SER LYS SER GLU LYS ILE GLY ILE SER VAL SEQRES 11 B 306 PHE LEU VAL GLY GLU THR GLU ARG PHE VAL GLY ARG ASP SEQRES 12 B 306 GLY ALA ARG LEU GLY ASP SER VAL PHE VAL SER GLY THR SEQRES 13 B 306 LEU GLY ASP SER ARG ALA GLY LEU GLU LEU LEU LEU MSE SEQRES 14 B 306 GLU LYS GLU GLU TYR GLU PRO PHE GLU LEU ALA LEU ILE SEQRES 15 B 306 GLN ARG HIS LEU ARG PRO THR ALA ARG ILE ASP TYR VAL SEQRES 16 B 306 LYS HIS ILE GLN LYS TYR ALA ASN ALA SER MSE ASP ILE SEQRES 17 B 306 SER ASP GLY LEU VAL ALA ASP ALA ASN HIS LEU ALA GLN SEQRES 18 B 306 ARG SER GLY VAL LYS ILE GLU ILE LEU SER GLU LYS LEU SEQRES 19 B 306 PRO LEU SER ASN GLU LEU LYS MSE TYR CYS GLU LYS TYR SEQRES 20 B 306 GLY LYS ASN PRO ILE GLU TYR ALA LEU PHE GLY GLY GLU SEQRES 21 B 306 ASP TYR GLN LEU LEU PHE THR HIS PRO LYS GLU ARG TRP SEQRES 22 B 306 ASN PRO PHE LEU ASP MSE THR GLU ILE GLY ARG VAL GLU SEQRES 23 B 306 GLU GLY GLU GLY VAL PHE VAL ASP GLY LYS LYS VAL GLU SEQRES 24 B 306 PRO LYS GLY TRP LYS HIS PHE MODRES 1VQV MSE A 1 MET SELENOMETHIONINE MODRES 1VQV MSE A 169 MET SELENOMETHIONINE MODRES 1VQV MSE A 206 MET SELENOMETHIONINE MODRES 1VQV MSE A 242 MET SELENOMETHIONINE MODRES 1VQV MSE A 279 MET SELENOMETHIONINE MODRES 1VQV MSE B 1 MET SELENOMETHIONINE MODRES 1VQV MSE B 169 MET SELENOMETHIONINE MODRES 1VQV MSE B 206 MET SELENOMETHIONINE MODRES 1VQV MSE B 242 MET SELENOMETHIONINE MODRES 1VQV MSE B 279 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 169 8 HET MSE A 206 8 HET MSE A 242 8 HET MSE A 279 8 HET MSE B 1 8 HET MSE B 169 8 HET MSE B 206 8 HET MSE B 242 8 HET MSE B 279 8 HET PO4 A1001 5 HET PO4 A1002 9 HET PO4 B1003 5 HET PO4 B1004 9 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 HOH *116(H2 O) HELIX 1 1 LEU A 11 GLU A 20 1 10 HELIX 2 2 ILE A 56 ASN A 75 1 20 HELIX 3 3 GLU A 93 LYS A 112 1 20 HELIX 4 4 GLY A 158 LEU A 168 1 11 HELIX 5 5 GLU A 175 ARG A 187 1 13 HELIX 6 6 ARG A 191 ASP A 193 5 3 HELIX 7 7 TYR A 194 ALA A 202 1 9 HELIX 8 8 GLY A 211 GLY A 224 1 14 HELIX 9 9 SER A 231 LEU A 234 5 4 HELIX 10 10 SER A 237 GLY A 248 1 12 HELIX 11 11 ASN A 250 PHE A 257 1 8 HELIX 12 12 ARG B 2 GLY B 7 1 6 HELIX 13 13 GLY B 7 GLU B 20 1 14 HELIX 14 14 ILE B 56 ALA B 74 1 19 HELIX 15 15 GLU B 93 LYS B 112 1 20 HELIX 16 16 GLY B 158 MSE B 169 1 12 HELIX 17 17 GLU B 175 ARG B 187 1 13 HELIX 18 18 ARG B 191 ASP B 193 5 3 HELIX 19 19 TYR B 194 ALA B 202 1 9 HELIX 20 20 GLY B 211 SER B 223 1 13 HELIX 21 21 SER B 231 LEU B 234 5 4 HELIX 22 22 SER B 237 TYR B 247 1 11 HELIX 23 23 ASN B 250 PHE B 257 1 8 HELIX 24 24 PRO B 269 TRP B 273 5 5 SHEET 1 A 4 LYS A 37 ASN A 46 0 SHEET 2 A 4 GLY A 127 THR A 136 -1 O ILE A 128 N LEU A 45 SHEET 3 A 4 LEU A 78 LEU A 88 -1 N LEU A 83 O PHE A 131 SHEET 4 A 4 GLU A 114 GLY A 117 1 O GLU A 114 N ALA A 82 SHEET 1 B 4 LYS A 37 ASN A 46 0 SHEET 2 B 4 GLY A 127 THR A 136 -1 O ILE A 128 N LEU A 45 SHEET 3 B 4 LEU A 78 LEU A 88 -1 N LEU A 83 O PHE A 131 SHEET 4 B 4 ILE A 120 LYS A 122 1 O SER A 121 N LEU A 88 SHEET 1 C 6 LEU A 265 HIS A 268 0 SHEET 2 C 6 SER A 150 VAL A 153 -1 N PHE A 152 O PHE A 266 SHEET 3 C 6 THR A 280 GLU A 286 -1 O ILE A 282 N VAL A 151 SHEET 4 C 6 LYS A 226 ILE A 229 -1 N LYS A 226 O GLU A 286 SHEET 5 C 6 VAL A 291 VAL A 293 1 O PHE A 292 N ILE A 229 SHEET 6 C 6 LYS A 296 LYS A 297 -1 O LYS A 296 N VAL A 293 SHEET 1 D 4 LEU B 38 ASN B 46 0 SHEET 2 D 4 GLY B 127 THR B 136 -1 O ILE B 128 N LEU B 45 SHEET 3 D 4 GLY B 77 LEU B 88 -1 N TRP B 81 O VAL B 133 SHEET 4 D 4 GLU B 114 GLY B 117 1 O VAL B 116 N ALA B 82 SHEET 1 E 4 LEU B 38 ASN B 46 0 SHEET 2 E 4 GLY B 127 THR B 136 -1 O ILE B 128 N LEU B 45 SHEET 3 E 4 GLY B 77 LEU B 88 -1 N TRP B 81 O VAL B 133 SHEET 4 E 4 ILE B 120 LYS B 122 1 O SER B 121 N LEU B 88 SHEET 1 F 7 ALA B 204 ASP B 207 0 SHEET 2 F 7 LEU B 264 HIS B 268 -1 O THR B 267 N ALA B 204 SHEET 3 F 7 SER B 150 VAL B 153 -1 N SER B 150 O HIS B 268 SHEET 4 F 7 THR B 280 GLU B 286 -1 O ILE B 282 N VAL B 151 SHEET 5 F 7 LYS B 226 ILE B 229 -1 N GLU B 228 O ARG B 284 SHEET 6 F 7 VAL B 291 VAL B 293 1 O PHE B 292 N ILE B 229 SHEET 7 F 7 LYS B 296 LYS B 297 -1 O LYS B 296 N VAL B 293 LINK C MSE A 1 N ARG A 2 1555 1555 1.34 LINK C LEU A 168 N MSE A 169 1555 1555 1.32 LINK C MSE A 169 N GLU A 170 1555 1555 1.33 LINK C SER A 205 N MSE A 206 1555 1555 1.33 LINK C MSE A 206 N ASP A 207 1555 1555 1.33 LINK C LYS A 241 N MSE A 242 1555 1555 1.32 LINK C MSE A 242 N TYR A 243 1555 1555 1.33 LINK C ASP A 278 N MSE A 279 1555 1555 1.32 LINK C MSE A 279 N THR A 280 1555 1555 1.33 LINK C MSE B 1 N ARG B 2 1555 1555 1.33 LINK C LEU B 168 N MSE B 169 1555 1555 1.32 LINK C MSE B 169 N GLU B 170 1555 1555 1.33 LINK C SER B 205 N MSE B 206 1555 1555 1.33 LINK C MSE B 206 N ASP B 207 1555 1555 1.33 LINK C LYS B 241 N MSE B 242 1555 1555 1.33 LINK C MSE B 242 N TYR B 243 1555 1555 1.33 LINK C ASP B 278 N MSE B 279 1555 1555 1.32 LINK C MSE B 279 N THR B 280 1555 1555 1.33 SITE 1 AC1 4 ARG A 184 ASN A 238 GLU A 239 SER B 95 SITE 1 AC2 7 ILE A 56 GLU A 58 ALA A 59 TRP A 62 SITE 2 AC2 7 ARG A 106 ARG A 187 TRP B 273 SITE 1 AC3 4 SER A 95 SER B 237 ASN B 238 GLU B 239 SITE 1 AC4 7 TRP A 273 ILE B 56 GLU B 58 ALA B 59 SITE 2 AC4 7 TRP B 62 ARG B 106 ARG B 187 CRYST1 65.580 65.580 192.060 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005207 0.00000 HETATM 1 N MSE A 1 8.046 2.463 129.888 1.00 70.94 N HETATM 2 CA MSE A 1 9.355 3.112 130.137 1.00 70.78 C HETATM 3 C MSE A 1 9.892 3.769 128.864 1.00 68.20 C HETATM 4 O MSE A 1 10.407 4.879 128.930 1.00 69.10 O HETATM 5 CB MSE A 1 10.360 2.088 130.655 1.00 75.42 C HETATM 6 CG MSE A 1 11.771 2.615 130.780 1.00 81.35 C HETATM 7 SE MSE A 1 12.176 3.269 132.592 1.00 99.38 SE HETATM 8 CE MSE A 1 14.156 3.090 132.525 1.00 94.19 C