HEADER OXIDOREDUCTASE 17-JUN-05 1VRS TITLE CRYSTAL STRUCTURE OF THE DISULFIDE-LINKED COMPLEX BETWEEN THE N- TITLE 2 TERMINAL AND C-TERMINAL DOMAIN OF THE ELECTRON TRANSFER CATALYST DSBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-143; COMPND 5 SYNONYM: PROTEIN-DISULFIDE REDUCTASE, C-TYPE CYTOCHROME BIOGENESIS COMPND 6 PROTEIN CYCZ, INNER MEMBRANE COPPER TOLERANCE PROTEIN; COMPND 7 EC: 1.8.1.8; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; COMPND 12 CHAIN: D, E, F; COMPND 13 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 438-565; COMPND 14 SYNONYM: PROTEIN-DISULFIDE REDUCTASE, C-TYPE CYTOCHROME BIOGENESIS COMPND 15 PROTEIN CYCZ, INNER MEMBRANE COPPER TOLERANCE PROTEIN; COMPND 16 EC: 1.8.1.8; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K12 SUBSTR.; SOURCE 3 ORGANISM_TAXID: 316407; SOURCE 4 STRAIN: W3110; SOURCE 5 GENE: DSBD, DIPZ, CYCZ, CUTA2, B4136; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDSBA3; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI STR. K12 SUBSTR.; SOURCE 13 ORGANISM_TAXID: 316407; SOURCE 14 STRAIN: W3110; SOURCE 15 GENE: DSBD, DIPZ, CYCZ, CUTA2, B4136; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21ROSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PDSBA3 KEYWDS DSBD, IMMUNOGLOBULIN-LIKE, THIOREDOXIN-LIKE, DISULFIDE-LINKED, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ROZHKOVA,C.U.STIRNIMANN,P.FREI,U.GRAUSCHOPF,R.BRUNISHOLZ, AUTHOR 2 M.G.GRUETTER,G.CAPITANI,R.GLOCKSHUBER REVDAT 6 20-NOV-24 1VRS 1 REMARK REVDAT 5 23-AUG-23 1VRS 1 REMARK REVDAT 4 20-OCT-21 1VRS 1 SEQADV REVDAT 3 13-JUL-11 1VRS 1 VERSN REVDAT 2 24-FEB-09 1VRS 1 VERSN REVDAT 1 12-JUL-05 1VRS 0 SPRSDE 12-JUL-05 1VRS 1SE1 JRNL AUTH A.ROZHKOVA,C.U.STIRNIMANN,P.FREI,U.GRAUSCHOPF,R.BRUNISHOLZ, JRNL AUTH 2 M.G.GRUETTER,G.CAPITANI,R.GLOCKSHUBER JRNL TITL STRUCTURAL BASIS AND KINETICS OF INTER- AND INTRAMOLECULAR JRNL TITL 2 DISULFIDE EXCHANGE IN THE REDOX CATALYST DSBD JRNL REF EMBO J. V. 23 1709 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15057279 JRNL DOI 10.1038/SJ.EMBOJ.7600178 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 707 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE : 0.4430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 105 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.043 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5670 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.05800 REMARK 3 B22 (A**2) : 2.23600 REMARK 3 B33 (A**2) : 3.82200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.13800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.240 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.16 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.474 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.503 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.315 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.643 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VRS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000002096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 98.2 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.751 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24336 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1JZD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, SODIUM FORMATE, PEG REMARK 280 2000 MME, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 94.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.30000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 94.23000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.30000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 6 REMARK 465 GLY A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 ASN A 126 REMARK 465 ALA A 127 REMARK 465 ALA A 128 REMARK 465 PRO A 129 REMARK 465 GLN A 130 REMARK 465 PRO A 131 REMARK 465 VAL A 132 REMARK 465 SER A 133 REMARK 465 VAL A 134 REMARK 465 PRO A 135 REMARK 465 GLN A 136 REMARK 465 GLN A 137 REMARK 465 GLU A 138 REMARK 465 GLN A 139 REMARK 465 PRO A 140 REMARK 465 THR A 141 REMARK 465 ALA A 142 REMARK 465 GLN A 143 REMARK 465 ALA D 419 REMARK 465 THR D 420 REMARK 465 HIS D 421 REMARK 465 THR D 422 REMARK 465 ALA D 423 REMARK 465 GLN D 424 REMARK 465 THR D 425 REMARK 465 GLN D 426 REMARK 465 THR D 427 REMARK 465 PRO D 546 REMARK 465 HIS D 547 REMARK 465 HIS D 548 REMARK 465 HIS D 549 REMARK 465 HIS D 550 REMARK 465 HIS D 551 REMARK 465 HIS D 552 REMARK 465 ASN B 126 REMARK 465 ALA B 127 REMARK 465 ALA B 128 REMARK 465 PRO B 129 REMARK 465 GLN B 130 REMARK 465 PRO B 131 REMARK 465 VAL B 132 REMARK 465 SER B 133 REMARK 465 VAL B 134 REMARK 465 PRO B 135 REMARK 465 GLN B 136 REMARK 465 GLN B 137 REMARK 465 GLU B 138 REMARK 465 GLN B 139 REMARK 465 PRO B 140 REMARK 465 THR B 141 REMARK 465 ALA B 142 REMARK 465 GLN B 143 REMARK 465 ALA E 419 REMARK 465 THR E 420 REMARK 465 HIS E 421 REMARK 465 THR E 422 REMARK 465 ALA E 423 REMARK 465 GLN E 424 REMARK 465 THR E 425 REMARK 465 ARG E 544 REMARK 465 GLN E 545 REMARK 465 PRO E 546 REMARK 465 HIS E 547 REMARK 465 HIS E 548 REMARK 465 HIS E 549 REMARK 465 HIS E 550 REMARK 465 HIS E 551 REMARK 465 HIS E 552 REMARK 465 GLY C 1 REMARK 465 LEU C 2 REMARK 465 PHE C 3 REMARK 465 ASP C 4 REMARK 465 ALA C 5 REMARK 465 PRO C 6 REMARK 465 GLY C 7 REMARK 465 ARG C 8 REMARK 465 VAL C 122 REMARK 465 VAL C 123 REMARK 465 ALA C 124 REMARK 465 ASN C 125 REMARK 465 ASN C 126 REMARK 465 ALA C 127 REMARK 465 ALA C 128 REMARK 465 PRO C 129 REMARK 465 GLN C 130 REMARK 465 PRO C 131 REMARK 465 VAL C 132 REMARK 465 SER C 133 REMARK 465 VAL C 134 REMARK 465 PRO C 135 REMARK 465 GLN C 136 REMARK 465 GLN C 137 REMARK 465 GLU C 138 REMARK 465 GLN C 139 REMARK 465 PRO C 140 REMARK 465 THR C 141 REMARK 465 ALA C 142 REMARK 465 GLN C 143 REMARK 465 ALA F 419 REMARK 465 THR F 420 REMARK 465 HIS F 421 REMARK 465 THR F 422 REMARK 465 ALA F 423 REMARK 465 GLN F 424 REMARK 465 THR F 425 REMARK 465 GLN F 426 REMARK 465 THR F 427 REMARK 465 PRO F 546 REMARK 465 HIS F 547 REMARK 465 HIS F 548 REMARK 465 HIS F 549 REMARK 465 HIS F 550 REMARK 465 HIS F 551 REMARK 465 HIS F 552 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 73.64 -108.89 REMARK 500 GLN A 26 -129.91 60.63 REMARK 500 HIS A 52 32.94 70.66 REMARK 500 GLU A 69 -8.01 -59.40 REMARK 500 ASP A 79 -69.80 64.54 REMARK 500 ALA A 106 0.88 -66.03 REMARK 500 ALA A 124 -67.54 -20.01 REMARK 500 ALA D 447 32.42 -80.06 REMARK 500 ARG D 542 33.57 -87.32 REMARK 500 GLN B 26 -128.45 60.98 REMARK 500 GLU B 69 -68.42 -27.62 REMARK 500 PHE B 70 -91.02 -59.55 REMARK 500 ASP B 79 -70.21 63.97 REMARK 500 THR E 427 -63.82 -104.02 REMARK 500 LYS E 448 75.42 46.99 REMARK 500 LEU E 541 -74.02 -45.70 REMARK 500 ARG E 542 21.02 -69.04 REMARK 500 ASN C 25 88.18 -155.99 REMARK 500 GLN C 26 -126.98 61.09 REMARK 500 HIS C 52 32.88 77.38 REMARK 500 ASP C 79 -71.02 64.78 REMARK 500 ALA C 106 2.17 -66.86 REMARK 500 SER C 120 -154.46 -97.45 REMARK 500 LYS F 448 121.95 -15.66 REMARK 500 ARG F 544 -53.49 -134.94 REMARK 500 REMARK 500 REMARK: NULL DBREF 1VRS A 1 143 UNP P36655 DSBD_ECOLI 20 162 DBREF 1VRS B 1 143 UNP P36655 DSBD_ECOLI 20 162 DBREF 1VRS C 1 143 UNP P36655 DSBD_ECOLI 20 162 DBREF 1VRS D 419 546 UNP P36655 DSBD_ECOLI 438 565 DBREF 1VRS E 419 546 UNP P36655 DSBD_ECOLI 438 565 DBREF 1VRS F 419 546 UNP P36655 DSBD_ECOLI 438 565 SEQADV 1VRS SER A 103 UNP P36655 CYS 122 ENGINEERED MUTATION SEQADV 1VRS SER B 103 UNP P36655 CYS 122 ENGINEERED MUTATION SEQADV 1VRS SER C 103 UNP P36655 CYS 122 ENGINEERED MUTATION SEQADV 1VRS SER D 464 UNP P36655 CYS 483 ENGINEERED MUTATION SEQADV 1VRS HIS D 547 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS D 548 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS D 549 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS D 550 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS D 551 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS D 552 UNP P36655 EXPRESSION TAG SEQADV 1VRS SER E 464 UNP P36655 CYS 483 ENGINEERED MUTATION SEQADV 1VRS HIS E 547 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS E 548 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS E 549 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS E 550 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS E 551 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS E 552 UNP P36655 EXPRESSION TAG SEQADV 1VRS SER F 464 UNP P36655 CYS 483 ENGINEERED MUTATION SEQADV 1VRS HIS F 547 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS F 548 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS F 549 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS F 550 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS F 551 UNP P36655 EXPRESSION TAG SEQADV 1VRS HIS F 552 UNP P36655 EXPRESSION TAG SEQRES 1 A 143 GLY LEU PHE ASP ALA PRO GLY ARG SER GLN PHE VAL PRO SEQRES 2 A 143 ALA ASP GLN ALA PHE ALA PHE ASP PHE GLN GLN ASN GLN SEQRES 3 A 143 HIS ASP LEU ASN LEU THR TRP GLN ILE LYS ASP GLY TYR SEQRES 4 A 143 TYR LEU TYR ARG LYS GLN ILE ARG ILE THR PRO GLU HIS SEQRES 5 A 143 ALA LYS ILE ALA ASP VAL GLN LEU PRO GLN GLY VAL TRP SEQRES 6 A 143 HIS GLU ASP GLU PHE TYR GLY LYS SER GLU ILE TYR ARG SEQRES 7 A 143 ASP ARG LEU THR LEU PRO VAL THR ILE ASN GLN ALA SER SEQRES 8 A 143 ALA GLY ALA THR LEU THR VAL THR TYR GLN GLY SER ALA SEQRES 9 A 143 ASP ALA GLY PHE CYS TYR PRO PRO GLU THR LYS THR VAL SEQRES 10 A 143 PRO LEU SER GLU VAL VAL ALA ASN ASN ALA ALA PRO GLN SEQRES 11 A 143 PRO VAL SER VAL PRO GLN GLN GLU GLN PRO THR ALA GLN SEQRES 1 D 134 ALA THR HIS THR ALA GLN THR GLN THR HIS LEU ASN PHE SEQRES 2 D 134 THR GLN ILE LYS THR VAL ASP GLU LEU ASN GLN ALA LEU SEQRES 3 D 134 VAL GLU ALA LYS GLY LYS PRO VAL MET LEU ASP LEU TYR SEQRES 4 D 134 ALA ASP TRP CYS VAL ALA SER LYS GLU PHE GLU LYS TYR SEQRES 5 D 134 THR PHE SER ASP PRO GLN VAL GLN LYS ALA LEU ALA ASP SEQRES 6 D 134 THR VAL LEU LEU GLN ALA ASN VAL THR ALA ASN ASP ALA SEQRES 7 D 134 GLN ASP VAL ALA LEU LEU LYS HIS LEU ASN VAL LEU GLY SEQRES 8 D 134 LEU PRO THR ILE LEU PHE PHE ASP GLY GLN GLY GLN GLU SEQRES 9 D 134 HIS PRO GLN ALA ARG VAL THR GLY PHE MET ASP ALA GLU SEQRES 10 D 134 THR PHE SER ALA HIS LEU ARG ASP ARG GLN PRO HIS HIS SEQRES 11 D 134 HIS HIS HIS HIS SEQRES 1 B 143 GLY LEU PHE ASP ALA PRO GLY ARG SER GLN PHE VAL PRO SEQRES 2 B 143 ALA ASP GLN ALA PHE ALA PHE ASP PHE GLN GLN ASN GLN SEQRES 3 B 143 HIS ASP LEU ASN LEU THR TRP GLN ILE LYS ASP GLY TYR SEQRES 4 B 143 TYR LEU TYR ARG LYS GLN ILE ARG ILE THR PRO GLU HIS SEQRES 5 B 143 ALA LYS ILE ALA ASP VAL GLN LEU PRO GLN GLY VAL TRP SEQRES 6 B 143 HIS GLU ASP GLU PHE TYR GLY LYS SER GLU ILE TYR ARG SEQRES 7 B 143 ASP ARG LEU THR LEU PRO VAL THR ILE ASN GLN ALA SER SEQRES 8 B 143 ALA GLY ALA THR LEU THR VAL THR TYR GLN GLY SER ALA SEQRES 9 B 143 ASP ALA GLY PHE CYS TYR PRO PRO GLU THR LYS THR VAL SEQRES 10 B 143 PRO LEU SER GLU VAL VAL ALA ASN ASN ALA ALA PRO GLN SEQRES 11 B 143 PRO VAL SER VAL PRO GLN GLN GLU GLN PRO THR ALA GLN SEQRES 1 E 134 ALA THR HIS THR ALA GLN THR GLN THR HIS LEU ASN PHE SEQRES 2 E 134 THR GLN ILE LYS THR VAL ASP GLU LEU ASN GLN ALA LEU SEQRES 3 E 134 VAL GLU ALA LYS GLY LYS PRO VAL MET LEU ASP LEU TYR SEQRES 4 E 134 ALA ASP TRP CYS VAL ALA SER LYS GLU PHE GLU LYS TYR SEQRES 5 E 134 THR PHE SER ASP PRO GLN VAL GLN LYS ALA LEU ALA ASP SEQRES 6 E 134 THR VAL LEU LEU GLN ALA ASN VAL THR ALA ASN ASP ALA SEQRES 7 E 134 GLN ASP VAL ALA LEU LEU LYS HIS LEU ASN VAL LEU GLY SEQRES 8 E 134 LEU PRO THR ILE LEU PHE PHE ASP GLY GLN GLY GLN GLU SEQRES 9 E 134 HIS PRO GLN ALA ARG VAL THR GLY PHE MET ASP ALA GLU SEQRES 10 E 134 THR PHE SER ALA HIS LEU ARG ASP ARG GLN PRO HIS HIS SEQRES 11 E 134 HIS HIS HIS HIS SEQRES 1 C 143 GLY LEU PHE ASP ALA PRO GLY ARG SER GLN PHE VAL PRO SEQRES 2 C 143 ALA ASP GLN ALA PHE ALA PHE ASP PHE GLN GLN ASN GLN SEQRES 3 C 143 HIS ASP LEU ASN LEU THR TRP GLN ILE LYS ASP GLY TYR SEQRES 4 C 143 TYR LEU TYR ARG LYS GLN ILE ARG ILE THR PRO GLU HIS SEQRES 5 C 143 ALA LYS ILE ALA ASP VAL GLN LEU PRO GLN GLY VAL TRP SEQRES 6 C 143 HIS GLU ASP GLU PHE TYR GLY LYS SER GLU ILE TYR ARG SEQRES 7 C 143 ASP ARG LEU THR LEU PRO VAL THR ILE ASN GLN ALA SER SEQRES 8 C 143 ALA GLY ALA THR LEU THR VAL THR TYR GLN GLY SER ALA SEQRES 9 C 143 ASP ALA GLY PHE CYS TYR PRO PRO GLU THR LYS THR VAL SEQRES 10 C 143 PRO LEU SER GLU VAL VAL ALA ASN ASN ALA ALA PRO GLN SEQRES 11 C 143 PRO VAL SER VAL PRO GLN GLN GLU GLN PRO THR ALA GLN SEQRES 1 F 134 ALA THR HIS THR ALA GLN THR GLN THR HIS LEU ASN PHE SEQRES 2 F 134 THR GLN ILE LYS THR VAL ASP GLU LEU ASN GLN ALA LEU SEQRES 3 F 134 VAL GLU ALA LYS GLY LYS PRO VAL MET LEU ASP LEU TYR SEQRES 4 F 134 ALA ASP TRP CYS VAL ALA SER LYS GLU PHE GLU LYS TYR SEQRES 5 F 134 THR PHE SER ASP PRO GLN VAL GLN LYS ALA LEU ALA ASP SEQRES 6 F 134 THR VAL LEU LEU GLN ALA ASN VAL THR ALA ASN ASP ALA SEQRES 7 F 134 GLN ASP VAL ALA LEU LEU LYS HIS LEU ASN VAL LEU GLY SEQRES 8 F 134 LEU PRO THR ILE LEU PHE PHE ASP GLY GLN GLY GLN GLU SEQRES 9 F 134 HIS PRO GLN ALA ARG VAL THR GLY PHE MET ASP ALA GLU SEQRES 10 F 134 THR PHE SER ALA HIS LEU ARG ASP ARG GLN PRO HIS HIS SEQRES 11 F 134 HIS HIS HIS HIS FORMUL 7 HOH *284(H2 O) HELIX 1 1 PRO A 13 ALA A 17 1 5 HELIX 2 2 LYS A 44 ILE A 46 5 3 HELIX 3 3 THR D 436 ALA D 447 1 12 HELIX 4 4 CYS D 461 THR D 471 1 11 HELIX 5 5 ASP D 474 LEU D 481 1 8 HELIX 6 6 ASP D 495 ASN D 506 1 12 HELIX 7 7 HIS D 523 ARG D 527 5 5 HELIX 8 8 ASP D 533 ARG D 542 1 10 HELIX 9 9 PRO B 13 ALA B 17 1 5 HELIX 10 10 LYS B 44 ILE B 46 5 3 HELIX 11 11 THR E 436 LYS E 448 1 13 HELIX 12 12 CYS E 461 THR E 471 1 11 HELIX 13 13 ASP E 474 LEU E 481 1 8 HELIX 14 14 ASP E 495 ASN E 506 1 12 HELIX 15 15 HIS E 523 ARG E 527 5 5 HELIX 16 16 ASP E 533 ARG E 542 1 10 HELIX 17 17 PRO C 13 ALA C 17 1 5 HELIX 18 18 LYS C 44 ILE C 46 5 3 HELIX 19 19 THR F 436 LYS F 448 1 13 HELIX 20 20 CYS F 461 THR F 471 1 11 HELIX 21 21 ASP F 474 LEU F 481 1 8 HELIX 22 22 ASP F 495 LEU F 505 1 11 HELIX 23 23 HIS F 523 ARG F 527 5 5 HELIX 24 24 ASP F 533 ASP F 543 1 11 SHEET 1 A 4 PHE A 18 ASN A 25 0 SHEET 2 A 4 ASP A 28 ILE A 35 -1 O THR A 32 N ASP A 21 SHEET 3 A 4 ARG A 80 TYR A 100 -1 O VAL A 85 N LEU A 29 SHEET 4 A 4 ARG A 47 ILE A 55 -1 N LYS A 54 O GLN A 89 SHEET 1 B 4 PHE A 18 ASN A 25 0 SHEET 2 B 4 ASP A 28 ILE A 35 -1 O THR A 32 N ASP A 21 SHEET 3 B 4 ARG A 80 TYR A 100 -1 O VAL A 85 N LEU A 29 SHEET 4 B 4 GLU A 113 PRO A 118 -1 O VAL A 117 N LEU A 96 SHEET 1 C 5 VAL A 64 ASP A 68 0 SHEET 2 C 5 GLY A 72 TYR A 77 -1 O ILE A 76 N VAL A 64 SHEET 3 C 5 TYR A 39 TYR A 42 -1 N LEU A 41 O TYR A 77 SHEET 4 C 5 GLY A 102 ALA A 104 -1 O SER A 103 N TYR A 40 SHEET 5 C 5 PHE A 108 CYS A 109 -1 O PHE A 108 N ALA A 104 SHEET 1 D 5 THR D 432 GLN D 433 0 SHEET 2 D 5 VAL D 485 ASN D 490 1 O LEU D 486 N THR D 432 SHEET 3 D 5 VAL D 452 TYR D 457 1 N MET D 453 O LEU D 487 SHEET 4 D 5 THR D 512 PHE D 516 -1 O PHE D 516 N VAL D 452 SHEET 5 D 5 VAL D 528 THR D 529 -1 O VAL D 528 N ILE D 513 SHEET 1 E 4 PHE B 18 ASN B 25 0 SHEET 2 E 4 ASP B 28 ILE B 35 -1 O THR B 32 N ASP B 21 SHEET 3 E 4 ARG B 80 TYR B 100 -1 O VAL B 85 N LEU B 29 SHEET 4 E 4 ARG B 47 ILE B 55 -1 N THR B 49 O THR B 97 SHEET 1 F 4 PHE B 18 ASN B 25 0 SHEET 2 F 4 ASP B 28 ILE B 35 -1 O THR B 32 N ASP B 21 SHEET 3 F 4 ARG B 80 TYR B 100 -1 O VAL B 85 N LEU B 29 SHEET 4 F 4 GLU B 113 PRO B 118 -1 O VAL B 117 N LEU B 96 SHEET 1 G 5 VAL B 64 GLU B 67 0 SHEET 2 G 5 LYS B 73 TYR B 77 -1 O ILE B 76 N VAL B 64 SHEET 3 G 5 TYR B 39 TYR B 42 -1 N LEU B 41 O TYR B 77 SHEET 4 G 5 GLY B 102 ALA B 104 -1 O SER B 103 N TYR B 40 SHEET 5 G 5 PHE B 108 CYS B 109 -1 O PHE B 108 N ALA B 104 SHEET 1 H 5 THR E 432 GLN E 433 0 SHEET 2 H 5 VAL E 485 ASN E 490 1 O LEU E 486 N THR E 432 SHEET 3 H 5 VAL E 452 TYR E 457 1 N MET E 453 O LEU E 487 SHEET 4 H 5 THR E 512 PHE E 516 -1 O PHE E 516 N VAL E 452 SHEET 5 H 5 VAL E 528 THR E 529 -1 O VAL E 528 N ILE E 513 SHEET 1 I 4 PHE C 18 ASN C 25 0 SHEET 2 I 4 ASP C 28 ILE C 35 -1 O THR C 32 N ASP C 21 SHEET 3 I 4 ARG C 80 TYR C 100 -1 O VAL C 85 N LEU C 29 SHEET 4 I 4 ARG C 47 ILE C 55 -1 N THR C 49 O THR C 97 SHEET 1 J 4 PHE C 18 ASN C 25 0 SHEET 2 J 4 ASP C 28 ILE C 35 -1 O THR C 32 N ASP C 21 SHEET 3 J 4 ARG C 80 TYR C 100 -1 O VAL C 85 N LEU C 29 SHEET 4 J 4 GLU C 113 PRO C 118 -1 O VAL C 117 N LEU C 96 SHEET 1 K 5 VAL C 64 ASP C 68 0 SHEET 2 K 5 GLY C 72 TYR C 77 -1 O ILE C 76 N VAL C 64 SHEET 3 K 5 TYR C 39 TYR C 42 -1 N LEU C 41 O TYR C 77 SHEET 4 K 5 GLY C 102 ALA C 104 -1 O SER C 103 N TYR C 40 SHEET 5 K 5 PHE C 108 CYS C 109 -1 O PHE C 108 N ALA C 104 SHEET 1 L 5 THR F 432 GLN F 433 0 SHEET 2 L 5 VAL F 485 ASN F 490 1 O LEU F 486 N THR F 432 SHEET 3 L 5 VAL F 452 TYR F 457 1 N MET F 453 O LEU F 487 SHEET 4 L 5 THR F 512 PHE F 516 -1 O PHE F 516 N VAL F 452 SHEET 5 L 5 VAL F 528 THR F 529 -1 O VAL F 528 N ILE F 513 SSBOND 1 CYS A 109 CYS D 461 1555 1555 2.04 SSBOND 2 CYS B 109 CYS E 461 1555 1555 2.05 SSBOND 3 CYS C 109 CYS F 461 1555 1555 2.03 CISPEP 1 LEU D 510 PRO D 511 0 -0.16 CISPEP 2 LEU E 510 PRO E 511 0 -0.35 CISPEP 3 LEU F 510 PRO F 511 0 -0.03 CRYST1 188.460 52.600 107.920 90.00 100.39 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005306 0.000000 0.000973 0.00000 SCALE2 0.000000 0.019011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009421 0.00000