data_1VRZ # _entry.id 1VRZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VRZ pdb_00001vrz 10.2210/pdb1vrz/pdb RCSB RCSB003001 ? ? WWPDB D_1000003001 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 13 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 15 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2005-11-01 _pdbx_database_PDB_obs_spr.pdb_id 1VRZ _pdbx_database_PDB_obs_spr.replace_pdb_id 1Q4F _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VRZ _pdbx_database_status.recvd_initial_deposition_date 2005-10-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal Rudresh 1 'Ramakumar, S.' 2 'Ramagopal, U.A.' 3 'Inai, Y.' 4 'Sahal, D.' 5 # _citation.id primary _citation.title 'De Novo Design and Characterization of a Helical Hairpin Eicosapeptide; Emergence of an Anion Receptor in the Linker Region.' _citation.journal_abbrev Structure _citation.journal_volume 12 _citation.page_first 389 _citation.page_last 396 _citation.year 2004 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15016355 _citation.pdbx_database_id_DOI 10.1016/j.str.2004.02.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary Rudresh 1 ? primary 'Ramakumar, S.' 2 ? primary 'Ramagopal, U.A.' 3 ? primary 'Inai, Y.' 4 ? primary 'Goel, S.' 5 ? primary 'Sahal, D.' 6 ? primary 'Chauhan, V.S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DE NOVO DESIGNED 21 RESIDUE PEPTIDE' 2141.365 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)G(23F)A(23F)(23F)A(23F)(23F)AGGGG(23F)AL(23F)AL(23F)A(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XGFAFFAFFAGGGGFALFALFAX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 23F n 1 4 ALA n 1 5 23F n 1 6 23F n 1 7 ALA n 1 8 23F n 1 9 23F n 1 10 ALA n 1 11 GLY n 1 12 GLY n 1 13 GLY n 1 14 GLY n 1 15 23F n 1 16 ALA n 1 17 LEU n 1 18 23F n 1 19 ALA n 1 20 LEU n 1 21 23F n 1 22 ALA n 1 23 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'THE PEPTIDE IS CHEMICALY SYNTHEISED BY SOLID PHASE MANUAL PEPTIDE SYNTHESIS USING FMOC CHEMISTRY.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 23F 'peptide linking' n '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' DEHYDROPHENYLALANINE 'C9 H9 N O2' 163.173 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 1 1 ACE ACE A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 23F 3 3 3 23F 23F A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 23F 5 5 5 23F 23F A . n A 1 6 23F 6 6 6 23F 23F A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 23F 8 8 8 23F 23F A . n A 1 9 23F 9 9 9 23F 23F A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 23F 15 15 15 23F 23F A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 23F 18 18 18 23F 23F A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 23F 21 21 21 23F 23F A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 NH2 23 23 23 NH2 NH2 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 24 24 ACT ACT A . C 3 HOH 1 25 25 HOH HOH A . C 3 HOH 2 26 26 HOH HOH A . C 3 HOH 3 27 27 HOH HOH A . C 3 HOH 4 28 28 HOH HOH A . C 3 HOH 5 29 29 HOH HOH A . C 3 HOH 6 30 30 HOH HOH A . C 3 HOH 7 31 31 HOH HOH A . C 3 HOH 8 32 32 HOH HOH A . C 3 HOH 9 33 33 HOH HOH A . C 3 HOH 10 34 34 HOH HOH A . C 3 HOH 11 35 35 HOH HOH A . C 3 HOH 12 36 36 HOH HOH A . C 3 HOH 13 37 37 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 SCALEPACK 'data scaling' . ? 2 SHELXS phasing . ? 3 SHELXL-97 refinement . ? 4 HKL-2000 'data reduction' . ? 5 # _cell.entry_id 1VRZ _cell.length_a 46.651 _cell.length_b 20.987 _cell.length_c 14.449 _cell.angle_alpha 90.00 _cell.angle_beta 94.66 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VRZ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VRZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.65 _exptl_crystal.density_percent_sol 25.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'ACETIC ACID AND ETHANOL (1:1 V/V) MIXTURE, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2001-08-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9A _diffrn_source.pdbx_wavelength 0.987 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VRZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 4.0 _reflns.d_resolution_low 12.710 _reflns.d_resolution_high 1.050 _reflns.number_obs 6913 _reflns.number_all 7388 _reflns.percent_possible_obs 93.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.5000 _reflns.B_iso_Wilson_estimate 5.71 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.05 _reflns_shell.d_res_low 1.09 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.239 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 20.000 _reflns_shell.pdbx_redundancy 6.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 623 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1VRZ _refine.ls_number_reflns_obs 6913 _refine.ls_number_reflns_all 7382 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 12.71 _refine.ls_d_res_high 1.05 _refine.ls_percent_reflns_obs 93.57 _refine.ls_R_factor_obs 0.1254 _refine.ls_R_factor_all 0.1311 _refine.ls_R_factor_R_work 0.1254 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 1532 _refine.ls_number_restraints 1 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VRZ _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_hydrogen 122.00 _refine_analyze.occupancy_sum_non_hydrogen 172.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 286 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 13 _refine_hist.number_atoms_total 303 _refine_hist.d_res_high 1.05 _refine_hist.d_res_low 12.71 # _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.119 _refine_ls_shell.d_res_high 1.05 _refine_ls_shell.d_res_low 1.10 _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_R_work 758 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _pdbx_refine.entry_id 1VRZ _pdbx_refine.R_factor_all_no_cutoff 0.125 _pdbx_refine.R_factor_obs_no_cutoff 0.125 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.125 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 6913 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1VRZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VRZ _struct.title 'Helix turn helix motif' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VRZ _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'HTH, HELIX-TURN-HELIX MOTIF, DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VRZ _struct_ref.pdbx_db_accession 1VRZ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VRZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 23 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1VRZ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 23 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 23 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 2 ? GLY A 12 ? GLY A 2 GLY A 12 5 ? 11 HELX_P HELX_P2 2 GLY A 13 ? ALA A 22 ? GLY A 13 ALA A 22 5 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.192 ? ? covale2 covale both ? A GLY 2 C ? ? ? 1_555 A 23F 3 N ? ? A GLY 2 A 23F 3 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale3 covale both ? A 23F 3 C ? ? ? 1_555 A ALA 4 N ? ? A 23F 3 A ALA 4 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale4 covale both ? A ALA 4 C ? ? ? 1_555 A 23F 5 N ? ? A ALA 4 A 23F 5 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale5 covale both ? A 23F 5 C ? ? ? 1_555 A 23F 6 N ? ? A 23F 5 A 23F 6 1_555 ? ? ? ? ? ? ? 1.362 ? ? covale6 covale both ? A 23F 6 C ? ? ? 1_555 A ALA 7 N ? ? A 23F 6 A ALA 7 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale7 covale both ? A ALA 7 C ? ? ? 1_555 A 23F 8 N ? ? A ALA 7 A 23F 8 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale8 covale both ? A 23F 8 C ? ? ? 1_555 A 23F 9 N ? ? A 23F 8 A 23F 9 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale9 covale both ? A 23F 9 C ? ? ? 1_555 A ALA 10 N ? ? A 23F 9 A ALA 10 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale10 covale both ? A GLY 14 C ? ? ? 1_555 A 23F 15 N ? ? A GLY 14 A 23F 15 1_555 ? ? ? ? ? ? ? 1.368 ? ? covale11 covale both ? A 23F 15 C ? ? ? 1_555 A ALA 16 N ? ? A 23F 15 A ALA 16 1_555 ? ? ? ? ? ? ? 1.394 ? ? covale12 covale both ? A LEU 17 C ? ? ? 1_555 A 23F 18 N ? ? A LEU 17 A 23F 18 1_555 ? ? ? ? ? ? ? 1.384 ? ? covale13 covale both ? A 23F 18 C ? ? ? 1_555 A ALA 19 N ? ? A 23F 18 A ALA 19 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale14 covale both ? A LEU 20 C ? ? ? 1_555 A 23F 21 N ? ? A LEU 20 A 23F 21 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? A 23F 21 C ? ? ? 1_555 A ALA 22 N ? ? A 23F 21 A ALA 22 1_555 ? ? ? ? ? ? ? 1.350 ? ? covale16 covale both ? A ALA 22 C ? ? ? 1_555 A NH2 23 N ? ? A ALA 22 A NH2 23 1_555 ? ? ? ? ? ? ? 1.338 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ACT _struct_site.pdbx_auth_seq_id 24 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE ACT A 24' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 23F A 5 ? 23F A 5 . ? 4_646 ? 2 AC1 5 23F A 9 ? 23F A 9 . ? 1_555 ? 3 AC1 5 GLY A 12 ? GLY A 12 . ? 1_555 ? 4 AC1 5 GLY A 13 ? GLY A 13 . ? 1_555 ? 5 AC1 5 ALA A 16 ? ALA A 16 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 28 ? ? 1_555 O A HOH 29 ? ? 4_647 1.64 2 1 O A HOH 26 ? ? 1_555 O A HOH 28 ? ? 4_657 1.71 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ACE _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLY _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.192 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation -0.144 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 A _pdbx_validate_polymer_linkage.auth_comp_id_1 ACE _pdbx_validate_polymer_linkage.auth_seq_id_1 1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 A _pdbx_validate_polymer_linkage.auth_comp_id_2 GLY _pdbx_validate_polymer_linkage.auth_seq_id_2 2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.19 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 23F 3 A 23F 3 ? PHE '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' 2 A 23F 5 A 23F 5 ? PHE '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' 3 A 23F 6 A 23F 6 ? PHE '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' 4 A 23F 8 A 23F 8 ? PHE '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' 5 A 23F 9 A 23F 9 ? PHE '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' 6 A 23F 15 A 23F 15 ? PHE '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' 7 A 23F 18 A 23F 18 ? PHE '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' 8 A 23F 21 A 23F 21 ? PHE '(2Z)-2-AMINO-3-PHENYLACRYLIC ACID' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 23F N N N N 1 23F CA C N N 2 23F C C N N 3 23F OXT O N N 4 23F CB C N N 5 23F CG C Y N 6 23F CD1 C Y N 7 23F CD2 C Y N 8 23F CE1 C Y N 9 23F CE2 C Y N 10 23F CZ C Y N 11 23F O O N N 12 23F H H N N 13 23F H2 H N N 14 23F HXT H N N 15 23F HB H N N 16 23F HD1 H N N 17 23F HD2 H N N 18 23F HE1 H N N 19 23F HE2 H N N 20 23F HZ H N N 21 ACE C C N N 22 ACE O O N N 23 ACE CH3 C N N 24 ACE H H N N 25 ACE H1 H N N 26 ACE H2 H N N 27 ACE H3 H N N 28 ACT C C N N 29 ACT O O N N 30 ACT OXT O N N 31 ACT CH3 C N N 32 ACT H1 H N N 33 ACT H2 H N N 34 ACT H3 H N N 35 ALA N N N N 36 ALA CA C N S 37 ALA C C N N 38 ALA O O N N 39 ALA CB C N N 40 ALA OXT O N N 41 ALA H H N N 42 ALA H2 H N N 43 ALA HA H N N 44 ALA HB1 H N N 45 ALA HB2 H N N 46 ALA HB3 H N N 47 ALA HXT H N N 48 GLY N N N N 49 GLY CA C N N 50 GLY C C N N 51 GLY O O N N 52 GLY OXT O N N 53 GLY H H N N 54 GLY H2 H N N 55 GLY HA2 H N N 56 GLY HA3 H N N 57 GLY HXT H N N 58 HOH O O N N 59 HOH H1 H N N 60 HOH H2 H N N 61 LEU N N N N 62 LEU CA C N S 63 LEU C C N N 64 LEU O O N N 65 LEU CB C N N 66 LEU CG C N N 67 LEU CD1 C N N 68 LEU CD2 C N N 69 LEU OXT O N N 70 LEU H H N N 71 LEU H2 H N N 72 LEU HA H N N 73 LEU HB2 H N N 74 LEU HB3 H N N 75 LEU HG H N N 76 LEU HD11 H N N 77 LEU HD12 H N N 78 LEU HD13 H N N 79 LEU HD21 H N N 80 LEU HD22 H N N 81 LEU HD23 H N N 82 LEU HXT H N N 83 NH2 N N N N 84 NH2 HN1 H N N 85 NH2 HN2 H N N 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 23F N CA sing N N 1 23F N H sing N N 2 23F N H2 sing N N 3 23F CA C sing N N 4 23F CA CB doub N Z 5 23F C OXT sing N N 6 23F C O doub N N 7 23F OXT HXT sing N N 8 23F CB CG sing N N 9 23F CB HB sing N N 10 23F CG CD1 sing Y N 11 23F CG CD2 doub Y N 12 23F CD1 CE1 doub Y N 13 23F CD1 HD1 sing N N 14 23F CD2 CE2 sing Y N 15 23F CD2 HD2 sing N N 16 23F CE1 CZ sing Y N 17 23F CE1 HE1 sing N N 18 23F CE2 CZ doub Y N 19 23F CE2 HE2 sing N N 20 23F CZ HZ sing N N 21 ACE C O doub N N 22 ACE C CH3 sing N N 23 ACE C H sing N N 24 ACE CH3 H1 sing N N 25 ACE CH3 H2 sing N N 26 ACE CH3 H3 sing N N 27 ACT C O doub N N 28 ACT C OXT sing N N 29 ACT C CH3 sing N N 30 ACT CH3 H1 sing N N 31 ACT CH3 H2 sing N N 32 ACT CH3 H3 sing N N 33 ALA N CA sing N N 34 ALA N H sing N N 35 ALA N H2 sing N N 36 ALA CA C sing N N 37 ALA CA CB sing N N 38 ALA CA HA sing N N 39 ALA C O doub N N 40 ALA C OXT sing N N 41 ALA CB HB1 sing N N 42 ALA CB HB2 sing N N 43 ALA CB HB3 sing N N 44 ALA OXT HXT sing N N 45 GLY N CA sing N N 46 GLY N H sing N N 47 GLY N H2 sing N N 48 GLY CA C sing N N 49 GLY CA HA2 sing N N 50 GLY CA HA3 sing N N 51 GLY C O doub N N 52 GLY C OXT sing N N 53 GLY OXT HXT sing N N 54 HOH O H1 sing N N 55 HOH O H2 sing N N 56 LEU N CA sing N N 57 LEU N H sing N N 58 LEU N H2 sing N N 59 LEU CA C sing N N 60 LEU CA CB sing N N 61 LEU CA HA sing N N 62 LEU C O doub N N 63 LEU C OXT sing N N 64 LEU CB CG sing N N 65 LEU CB HB2 sing N N 66 LEU CB HB3 sing N N 67 LEU CG CD1 sing N N 68 LEU CG CD2 sing N N 69 LEU CG HG sing N N 70 LEU CD1 HD11 sing N N 71 LEU CD1 HD12 sing N N 72 LEU CD1 HD13 sing N N 73 LEU CD2 HD21 sing N N 74 LEU CD2 HD22 sing N N 75 LEU CD2 HD23 sing N N 76 LEU OXT HXT sing N N 77 NH2 N HN1 sing N N 78 NH2 N HN2 sing N N 79 # _atom_sites.entry_id 1VRZ _atom_sites.fract_transf_matrix[1][1] 0.021436 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001748 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.047649 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.069439 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_