HEADER ISOMERASE 28-JUN-06 1VS3 TITLE CRYSTAL STRUCTURE OF THE TRNA PSEUDOURIDINE SYNTHASE TRUA FROM THERMUS TITLE 2 THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA PSEUDOURIDINE SYNTHASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-249; COMPND 5 SYNONYM: TRNA-URIDINE ISOMERASE I, TRNA PSEUDOURIDYLATE SYNTHASE I; COMPND 6 EC: 5.4.99.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TRUA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS TRUA, PSEUDOURIDINE SYNTHASE, TRNA MODIFICATION, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.DONG,Y.BESSHO,M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 27-DEC-23 1VS3 1 REMARK REVDAT 4 06-NOV-19 1VS3 1 JRNL REVDAT 3 13-JUL-11 1VS3 1 VERSN REVDAT 2 24-FEB-09 1VS3 1 VERSN REVDAT 1 12-DEC-06 1VS3 0 JRNL AUTH X.DONG,Y.BESSHO,R.SHIBATA,M.NISHIMOTO,M.SHIROUZU, JRNL AUTH 2 S.KURAMITSU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF TRNA PSEUDOURIDINE SYNTHASE TRUA FROM JRNL TITL 2 THERMUS THERMOPHILUS HB8. JRNL REF RNA BIOL. V. 3 115 2006 JRNL REFN ESSN 1555-8584 JRNL PMID 17114947 JRNL DOI 10.4161/RNA.3.3.3286 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2374361.470 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1692 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3975 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 185 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 565 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.37000 REMARK 3 B22 (A**2) : 2.37000 REMARK 3 B33 (A**2) : -4.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.610 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.260 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.950 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 78.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000003003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-05; 30-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 298; 298 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY; SPRING-8 REMARK 200 BEAMLINE : AR-NW12A; BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924, 0.97954, 0.9700; 1.000 REMARK 200 MONOCHROMATOR : DOUBLE FLAT SI (III) CRYSTALS; REMARK 200 DOUBLE FLAT SI (III) CRYSTALS REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 6% PEG2000, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.99500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.76500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.99750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.76500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.99250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.76500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.99750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.76500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.99250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 331 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 20 OE1 GLU A 33 1.97 REMARK 500 OG1 THR A 161 O HOH A 527 2.07 REMARK 500 O PRO A 71 O HOH A 517 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N ALA B 171 O HOH A 524 4454 1.39 REMARK 500 O ARG B 213 O HOH A 486 4454 1.39 REMARK 500 C GLU B 170 O HOH A 524 4454 1.57 REMARK 500 CA ALA B 171 O HOH A 524 4454 1.63 REMARK 500 O PRO B 214 O HOH A 486 4454 1.66 REMARK 500 O ALA B 139 O HOH A 515 4454 1.77 REMARK 500 O ALA B 139 O HOH A 460 4454 1.80 REMARK 500 O ARG B 213 O HOH A 533 4454 1.84 REMARK 500 O GLU B 170 O HOH A 524 4454 1.85 REMARK 500 O LYS B 212 O HOH A 528 4454 1.86 REMARK 500 C PRO B 214 O HOH A 486 4454 1.87 REMARK 500 O GLY A 211 O HOH B 416 5455 1.95 REMARK 500 C ARG B 213 O HOH A 486 4454 2.02 REMARK 500 CB ALA B 171 O HOH A 524 4454 2.05 REMARK 500 NH1 ARG A 50 O HOH B 452 3555 2.07 REMARK 500 N ALA B 171 O HOH A 464 4454 2.14 REMARK 500 CB PRO A 214 O HOH B 426 5455 2.14 REMARK 500 CG GLU A 216 O HOH B 426 5455 2.15 REMARK 500 CA PRO B 214 O HOH A 486 4454 2.16 REMARK 500 O LEU B 135 O HOH A 527 4454 2.16 REMARK 500 OE2 GLU A 243 O HOH A 476 4454 2.17 REMARK 500 N ALA B 143 O HOH A 515 4454 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 171 CA ALA B 171 CB 0.254 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 161 N - CA - C ANGL. DEV. = -21.0 DEGREES REMARK 500 GLY B 164 N - CA - C ANGL. DEV. = 15.2 DEGREES REMARK 500 PRO B 214 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 18 -70.70 -77.87 REMARK 500 SER A 68 179.11 -57.01 REMARK 500 ILE A 70 127.99 -36.58 REMARK 500 ALA A 171 92.17 -162.08 REMARK 500 ARG A 213 165.93 -23.14 REMARK 500 PRO A 214 -172.09 -49.79 REMARK 500 SER A 217 -12.95 -48.62 REMARK 500 ARG B 23 39.59 74.59 REMARK 500 SER B 68 174.78 -52.55 REMARK 500 LYS B 158 -117.64 -103.32 REMARK 500 GLU B 159 26.89 -67.49 REMARK 500 ARG B 162 167.15 157.70 REMARK 500 ALA B 171 90.36 -163.85 REMARK 500 LEU B 210 -118.41 -101.47 REMARK 500 LYS B 212 121.30 -175.75 REMARK 500 ARG B 213 126.77 -15.38 REMARK 500 PRO B 214 172.10 -27.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000910.1 RELATED DB: TARGETDB DBREF 1VS3 A 1 249 UNP Q5SHU9 TRUA_THET8 1 249 DBREF 1VS3 B 1 249 UNP Q5SHU9 TRUA_THET8 1 249 SEQRES 1 A 249 MET ARG ARG LEU LEU LEU LEU CYS GLU TYR ASP GLY THR SEQRES 2 A 249 LEU PHE ALA GLY LEU GLN ARG GLN GLY ARG GLY LEU ARG SEQRES 3 A 249 THR VAL GLN GLY GLU LEU GLU ARG ALA LEU PRO GLY ILE SEQRES 4 A 249 GLY ALA LEU PRO LYS ALA VAL ALA ALA GLY ARG THR ASP SEQRES 5 A 249 ALA GLY VAL HIS ALA LEU ALA MET PRO PHE HIS VAL ASP SEQRES 6 A 249 VAL GLU SER ALA ILE PRO VAL GLU LYS VAL PRO GLU ALA SEQRES 7 A 249 LEU ASN ARG LEU LEU PRO GLU ASP LEU LYS VAL VAL GLY SEQRES 8 A 249 ALA ARG GLU VAL ALA PRO ASP PHE HIS ALA ARG LYS ASP SEQRES 9 A 249 ALA LEU TRP ARG ALA TYR ARG TYR ARG ILE LEU VAL ARG SEQRES 10 A 249 PRO HIS PRO SER PRO LEU LEU ARG HIS ARG ALA LEU TRP SEQRES 11 A 249 VAL ARG ARG PRO LEU ASP LEU GLU ALA MET GLU GLU ALA SEQRES 12 A 249 LEU SER LEU LEU LEU GLY ARG HIS ASN PHE LEU GLY PHE SEQRES 13 A 249 ALA LYS GLU GLU THR ARG PRO GLY GLU ARG GLU LEU LEU SEQRES 14 A 249 GLU ALA ARG LEU GLN VAL ALA GLU GLY GLU ALA GLY LEU SEQRES 15 A 249 GLU VAL ARG LEU TYR PHE ARG GLY LYS SER PHE LEU ARG SEQRES 16 A 249 GLY GLN VAL ARG GLY MET VAL GLY THR LEU LEU GLU VAL SEQRES 17 A 249 GLY LEU GLY LYS ARG PRO PRO GLU SER LEU LYS ALA ILE SEQRES 18 A 249 LEU LYS THR ALA ASP ARG ARG LEU ALA GLY PRO THR ALA SEQRES 19 A 249 PRO ALA HIS GLY LEU TYR PHE VAL GLU ALA ALA TYR PRO SEQRES 20 A 249 GLU GLU SEQRES 1 B 249 MET ARG ARG LEU LEU LEU LEU CYS GLU TYR ASP GLY THR SEQRES 2 B 249 LEU PHE ALA GLY LEU GLN ARG GLN GLY ARG GLY LEU ARG SEQRES 3 B 249 THR VAL GLN GLY GLU LEU GLU ARG ALA LEU PRO GLY ILE SEQRES 4 B 249 GLY ALA LEU PRO LYS ALA VAL ALA ALA GLY ARG THR ASP SEQRES 5 B 249 ALA GLY VAL HIS ALA LEU ALA MET PRO PHE HIS VAL ASP SEQRES 6 B 249 VAL GLU SER ALA ILE PRO VAL GLU LYS VAL PRO GLU ALA SEQRES 7 B 249 LEU ASN ARG LEU LEU PRO GLU ASP LEU LYS VAL VAL GLY SEQRES 8 B 249 ALA ARG GLU VAL ALA PRO ASP PHE HIS ALA ARG LYS ASP SEQRES 9 B 249 ALA LEU TRP ARG ALA TYR ARG TYR ARG ILE LEU VAL ARG SEQRES 10 B 249 PRO HIS PRO SER PRO LEU LEU ARG HIS ARG ALA LEU TRP SEQRES 11 B 249 VAL ARG ARG PRO LEU ASP LEU GLU ALA MET GLU GLU ALA SEQRES 12 B 249 LEU SER LEU LEU LEU GLY ARG HIS ASN PHE LEU GLY PHE SEQRES 13 B 249 ALA LYS GLU GLU THR ARG PRO GLY GLU ARG GLU LEU LEU SEQRES 14 B 249 GLU ALA ARG LEU GLN VAL ALA GLU GLY GLU ALA GLY LEU SEQRES 15 B 249 GLU VAL ARG LEU TYR PHE ARG GLY LYS SER PHE LEU ARG SEQRES 16 B 249 GLY GLN VAL ARG GLY MET VAL GLY THR LEU LEU GLU VAL SEQRES 17 B 249 GLY LEU GLY LYS ARG PRO PRO GLU SER LEU LYS ALA ILE SEQRES 18 B 249 LEU LYS THR ALA ASP ARG ARG LEU ALA GLY PRO THR ALA SEQRES 19 B 249 PRO ALA HIS GLY LEU TYR PHE VAL GLU ALA ALA TYR PRO SEQRES 20 B 249 GLU GLU FORMUL 3 HOH *565(H2 O) HELIX 1 1 GLY A 12 PHE A 15 5 4 HELIX 2 2 THR A 27 LEU A 36 1 10 HELIX 3 3 PRO A 37 GLY A 40 5 4 HELIX 4 4 PRO A 71 GLU A 73 5 3 HELIX 5 5 LYS A 74 LEU A 83 1 10 HELIX 6 6 ASP A 136 LEU A 148 1 13 HELIX 7 7 LEU A 154 ALA A 157 5 4 HELIX 8 8 GLY A 196 GLY A 211 1 16 HELIX 9 9 PRO A 214 GLU A 216 5 3 HELIX 10 10 SER A 217 ALA A 225 1 9 HELIX 11 11 ASP A 226 ALA A 230 5 5 HELIX 12 12 PRO A 235 HIS A 237 5 3 HELIX 13 13 THR B 27 LEU B 36 1 10 HELIX 14 14 PRO B 37 GLY B 40 5 4 HELIX 15 15 PRO B 71 GLU B 73 5 3 HELIX 16 16 LYS B 74 LEU B 83 1 10 HELIX 17 17 ASP B 136 LEU B 148 1 13 HELIX 18 18 LEU B 154 ALA B 157 5 4 HELIX 19 19 GLY B 196 LEU B 210 1 15 HELIX 20 20 GLU B 216 ALA B 225 1 10 HELIX 21 21 ASP B 226 ALA B 230 5 5 HELIX 22 22 PRO B 235 HIS B 237 5 3 SHEET 1 A 5 VAL A 46 ALA A 47 0 SHEET 2 A 5 HIS A 56 VAL A 66 -1 O HIS A 63 N VAL A 46 SHEET 3 A 5 LEU A 239 ALA A 245 1 O PHE A 241 N LEU A 58 SHEET 4 A 5 TRP A 107 VAL A 116 -1 N ARG A 111 O TYR A 240 SHEET 5 A 5 LEU A 129 VAL A 131 1 O LEU A 129 N ARG A 113 SHEET 1 B 8 LEU A 87 VAL A 95 0 SHEET 2 B 8 ARG A 2 TYR A 10 -1 N LEU A 5 O ARG A 93 SHEET 3 B 8 HIS A 56 VAL A 66 -1 O PHE A 62 N LEU A 6 SHEET 4 B 8 LEU A 239 ALA A 245 1 O PHE A 241 N LEU A 58 SHEET 5 B 8 TRP A 107 VAL A 116 -1 N ARG A 111 O TYR A 240 SHEET 6 B 8 LEU A 182 GLY A 190 -1 O VAL A 184 N ILE A 114 SHEET 7 B 8 GLU A 165 GLU A 177 -1 N ALA A 176 O GLU A 183 SHEET 8 B 8 GLY A 149 ASN A 152 -1 N HIS A 151 O ARG A 166 SHEET 1 C 5 VAL B 46 ALA B 47 0 SHEET 2 C 5 HIS B 56 VAL B 66 -1 O HIS B 63 N VAL B 46 SHEET 3 C 5 LEU B 239 ALA B 245 1 O PHE B 241 N HIS B 56 SHEET 4 C 5 TRP B 107 VAL B 116 -1 N ALA B 109 O VAL B 242 SHEET 5 C 5 LEU B 129 VAL B 131 1 O LEU B 129 N LEU B 115 SHEET 1 D 8 LEU B 87 VAL B 95 0 SHEET 2 D 8 ARG B 2 TYR B 10 -1 N LEU B 7 O GLY B 91 SHEET 3 D 8 HIS B 56 VAL B 66 -1 O PHE B 62 N LEU B 6 SHEET 4 D 8 LEU B 239 ALA B 245 1 O PHE B 241 N HIS B 56 SHEET 5 D 8 TRP B 107 VAL B 116 -1 N ALA B 109 O VAL B 242 SHEET 6 D 8 LEU B 182 GLY B 190 -1 O GLY B 190 N ARG B 108 SHEET 7 D 8 GLU B 165 GLU B 177 -1 N GLN B 174 O ARG B 185 SHEET 8 D 8 GLY B 149 ASN B 152 -1 N HIS B 151 O ARG B 166 CRYST1 91.530 91.530 163.990 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006098 0.00000