HEADER ENDONUCLEASE 04-MAR-97 1VSH TITLE ASV INTEGRASE CORE DOMAIN WITH ZN(II) COFACTORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN, RESIDUES 1 - 4, 52 - 209; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN); SOURCE 3 ORGANISM_TAXID: 11889; SOURCE 4 STRAIN: SCHMIDT-RUPPIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRC23IN(52-207); SOURCE 8 OTHER_DETAILS: ORIGINAL VIRAL DNA CLONE: JU ET AL., J. VIROL. SOURCE 9 33:1026-1033 (1980), ORIGINAL EXPRESSION CLONE TERRY ET AL., J. SOURCE 10 VIROL. 62:2358-2365 (1988), EXPRESSION CLONE FOR CORE: KULKOSKY ET SOURCE 11 AL., J. VIROL. 206:448-456 (1995). KEYWDS ENDONUCLEASE, HYDROLASE, ENDORIBONUCLEASE, RNA-DIRECTED DNA KEYWDS 2 POLYMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.BUJACZ,J.ALEXANDRATOS,A.WLODAWER REVDAT 4 05-JUN-24 1VSH 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1VSH 1 VERSN REVDAT 2 24-FEB-09 1VSH 1 VERSN REVDAT 1 15-MAY-97 1VSH 0 JRNL AUTH G.BUJACZ,J.ALEXANDRATOS,A.WLODAWER,G.MERKEL,M.ANDRAKE, JRNL AUTH 2 R.A.KATZ,A.M.SKALKA JRNL TITL BINDING OF DIFFERENT DIVALENT CATIONS TO THE ACTIVE SITE OF JRNL TITL 2 AVIAN SARCOMA VIRUS INTEGRASE AND THEIR EFFECTS ON ENZYMATIC JRNL TITL 3 ACTIVITY. JRNL REF J.BIOL.CHEM. V. 272 18161 1997 JRNL REFN ISSN 0021-9258 JRNL PMID 9218451 JRNL DOI 10.1074/JBC.272.29.18161 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROFFT REMARK 3 AUTHORS : KONNERT,HENDRICKSON,FINZEL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 12082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.043 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.044 ; 0.053 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.016 ; 0.025 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.174 ; 0.180 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.197 ; 0.400 REMARK 3 MULTIPLE TORSION (A) : 0.238 ; 0.400 REMARK 3 H-BOND (X...Y) (A) : 0.232 ; 0.400 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.800 ; 3.600 REMARK 3 STAGGERED (DEGREES) : 18.400; 10.000 REMARK 3 TRANSVERSE (DEGREES) : 37.700; 10.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.435 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.963 ; 3.400 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.043 ; 3.800 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.523 ; 6.600 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.15 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42400 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOSTRUCTURAL TO PDB ENTRY REMARK 200 1VSF REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 20% PEG REMARK 280 4000, 10% ISOPROPANOL, 100 MM HEPES, PH 7.5, THEN SOAKED IN 100 REMARK 280 MM ZNCL2. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.48000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.04000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.72000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.04000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.24000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.04000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.72000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.04000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.24000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.48000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY ACTIVE MOLECULE IS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -258.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.96000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 50 REMARK 465 LEU A 51 REMARK 465 ARG A 52 REMARK 465 GLU A 53 REMARK 465 ASN A 200 REMARK 465 LEU A 201 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 82 O HOH A 346 2.14 REMARK 500 O HOH A 328 O HOH A 422 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 64 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 70 NH1 - CZ - NH2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -11.9 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL A 90 CB - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 GLN A 92 CB - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 LYS A 119 CA - CB - CG ANGL. DEV. = 25.8 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 158 CB - CG - CD ANGL. DEV. = 19.0 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 165 CB - CG - OD1 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 55 41.40 -93.38 REMARK 500 PRO A 57 153.00 -43.74 REMARK 500 PRO A 147 91.22 -51.57 REMARK 500 SER A 150 -64.62 91.57 REMARK 500 GLN A 151 -160.44 -116.69 REMARK 500 GLN A 153 -1.47 -140.14 REMARK 500 LYS A 178 -117.77 -119.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 280 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD2 REMARK 620 2 GLU A 157 OE2 83.6 REMARK 620 3 HOH A 282 O 89.6 148.7 REMARK 620 4 HOH A 284 O 104.3 103.2 108.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 281 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 ASP A 121 OD2 95.4 REMARK 620 3 HOH A 283 O 103.4 126.6 REMARK 620 4 HOH A 284 O 100.1 94.1 129.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 285 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 103 ND1 REMARK 620 2 HOH A 286 O 111.5 REMARK 620 3 HOH A 287 O 87.6 118.2 REMARK 620 4 HOH A 288 O 109.8 119.0 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 289 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 194 OH REMARK 620 2 HIS A 198 ND1 104.9 REMARK 620 3 HOH A 291 O 98.7 107.4 REMARK 620 N 1 2 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: TAKEN FROM RELEASED PDB ENTRY 1VSF REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: TAKEN FROM RELEASED PDB ENTRY 1VSF REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: ACTIVE SITE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 261 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VSF RELATED DB: PDB REMARK 900 RELATED ID: 1VSI RELATED DB: PDB REMARK 900 RELATED ID: 1VSJ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ALA 101, VIRAL STRAIN DIFFERENCES REMARK 999 LYS 166, VIRAL STRAIN DIFFERENCES REMARK 999 REMARK 999 REFERENCE: THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE REMARK 999 PRESENTED HERE AND THE POL_RSVP SEQUENCE IS A RESULT OF REMARK 999 VIRAL STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, REMARK 999 ROUS SARCOMA VIRUS SCHMIDT-RUPPIN B, COMPARED TO THE REMARK 999 POL-RSVP SEQUENCE DIFFERS AT TWO POSITIONS WITH THE REMARK 999 CONSERVATIVE AMINO ACID RESIDUE DIFFERENCES VAL -> ALA REMARK 999 101, ARG -> LYS 166. DBREF 1VSH A 54 199 UNP P03354 POL_RSVP 626 771 SEQADV 1VSH ALA A 101 UNP P03354 VAL 673 VARIANT SEQADV 1VSH OCY A 125 UNP P03354 CYS 697 MODIFIED RESIDUE SEQADV 1VSH LYS A 166 UNP P03354 ARG 738 VARIANT SEQRES 1 A 152 PRO LEU ARG GLU GLY LEU GLY PRO LEU GLN ILE TRP GLN SEQRES 2 A 152 THR ASP PHE THR LEU GLU PRO ARG MET ALA PRO ARG SER SEQRES 3 A 152 TRP LEU ALA VAL THR VAL ASP THR ALA SER SER ALA ILE SEQRES 4 A 152 VAL VAL THR GLN HIS GLY ARG VAL THR SER VAL ALA ALA SEQRES 5 A 152 GLN HIS HIS TRP ALA THR ALA ILE ALA VAL LEU GLY ARG SEQRES 6 A 152 PRO LYS ALA ILE LYS THR ASP ASN GLY SER OCY PHE THR SEQRES 7 A 152 SER LYS SER THR ARG GLU TRP LEU ALA ARG TRP GLY ILE SEQRES 8 A 152 ALA HIS THR THR GLY ILE PRO GLY ASN SER GLN GLY GLN SEQRES 9 A 152 ALA MET VAL GLU ARG ALA ASN ARG LEU LEU LYS ASP LYS SEQRES 10 A 152 ILE ARG VAL LEU ALA GLU GLY ASP GLY PHE MET LYS ARG SEQRES 11 A 152 ILE PRO THR SER LYS GLN GLY GLU LEU LEU ALA LYS ALA SEQRES 12 A 152 MET TYR ALA LEU ASN HIS PHE ASN LEU MODRES 1VSH OCY A 125 CYS HYDROXYETHYLCYSTEINE HET OCY A 125 9 HET ZN A 280 1 HET ZN A 281 1 HET ZN A 285 1 HET ZN A 289 1 HET EPE A 261 15 HETNAM OCY HYDROXYETHYLCYSTEINE HETNAM ZN ZINC ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 1 OCY C5 H11 N O3 S FORMUL 2 ZN 4(ZN 2+) FORMUL 6 EPE C8 H18 N2 O4 S FORMUL 7 HOH *131(H2 O) HELIX 1 1 PRO A 69 MET A 71 5 3 HELIX 2 2 SER A 98 LEU A 112 1 15 HELIX 3 3 SER A 124 THR A 127 1 4 HELIX 4 4 LYS A 129 TRP A 138 1 10 HELIX 5 5 ALA A 154 GLY A 173 1 20 HELIX 6 6 THR A 182 ASN A 197 5 16 SHEET 1 A 5 ILE A 88 HIS A 93 0 SHEET 2 A 5 TRP A 76 ASP A 82 -1 N THR A 80 O VAL A 89 SHEET 3 A 5 ILE A 60 LEU A 67 -1 N THR A 66 O LEU A 77 SHEET 4 A 5 ALA A 117 LYS A 119 1 N ALA A 117 O TRP A 61 SHEET 5 A 5 ALA A 141 THR A 143 1 N ALA A 141 O ILE A 118 LINK C SER A 124 N OCY A 125 1555 1555 1.34 LINK C OCY A 125 N PHE A 126 1555 1555 1.33 LINK OD2 ASP A 64 ZN ZN A 280 1555 1555 2.35 LINK OD1 ASP A 64 ZN ZN A 281 1555 1555 2.09 LINK ND1 HIS A 103 ZN ZN A 285 1555 1555 2.24 LINK OD2 ASP A 121 ZN ZN A 281 1555 1555 2.19 LINK OE2 GLU A 157 ZN ZN A 280 1555 1555 2.31 LINK OH TYR A 194 ZN ZN A 289 1555 1555 2.13 LINK ND1 HIS A 198 ZN ZN A 289 1555 1555 2.39 LINK ZN ZN A 280 O HOH A 282 1555 1555 2.41 LINK ZN ZN A 280 O HOH A 284 1555 1555 2.03 LINK ZN ZN A 281 O HOH A 283 1555 1555 2.13 LINK ZN ZN A 281 O HOH A 284 1555 1555 2.19 LINK ZN ZN A 285 O HOH A 286 1555 1555 2.17 LINK ZN ZN A 285 O HOH A 287 1555 1555 2.67 LINK ZN ZN A 285 O HOH A 288 1555 1555 2.40 LINK ZN ZN A 289 O HOH A 291 1555 1555 2.66 CISPEP 1 ALA A 72 PRO A 73 0 3.46 SITE 1 ACT 3 ASP A 64 ASP A 121 GLU A 157 SITE 1 AC1 5 ASP A 64 GLU A 157 ZN A 281 HOH A 282 SITE 2 AC1 5 HOH A 284 SITE 1 AC2 5 ASP A 64 ASP A 121 ZN A 280 HOH A 283 SITE 2 AC2 5 HOH A 284 SITE 1 AC3 4 HIS A 103 HOH A 286 HOH A 287 HOH A 288 SITE 1 AC4 4 TYR A 194 HIS A 198 HOH A 290 HOH A 291 SITE 1 AC5 12 PRO A 73 SER A 75 TRP A 76 ARG A 95 SITE 2 AC5 12 VAL A 96 ARG A 137 TRP A 138 LYS A 166 SITE 3 AC5 12 ALA A 195 HIS A 198 HOH A 364 HOH A 367 CRYST1 66.080 66.080 80.960 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015133 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012352 0.00000