data_1VSK # _entry.id 1VSK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VSK pdb_00001vsk 10.2210/pdb1vsk/pdb WWPDB D_1000177117 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VSK _pdbx_database_status.recvd_initial_deposition_date 1998-09-18 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lubkowski, J.' 1 'Yang, F.' 2 'Alexandratos, J.' 3 'Wlodawer, A.' 4 # _citation.id primary _citation.title 'Structural basis for inactivating mutations and pH-dependent activity of avian sarcoma virus integrase.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 273 _citation.page_first 32685 _citation.page_last 32689 _citation.year 1998 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9830010 _citation.pdbx_database_id_DOI 10.1074/jbc.273.49.32685 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lubkowski, J.' 1 ? primary 'Yang, F.' 2 ? primary 'Alexandratos, J.' 3 ? primary 'Merkel, G.' 4 ? primary 'Katz, R.A.' 5 ? primary 'Gravuer, K.' 6 ? primary 'Skalka, A.M.' 7 ? primary 'Wlodawer, A.' 8 ? # _cell.entry_id 1VSK _cell.length_a 67.159 _cell.length_b 67.159 _cell.length_c 79.651 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VSK _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man INTEGRASE 15998.403 1 2.7.7.49 D64N 'CATALYTIC CORE DOMAIN' 'P03354 FRAGMENT OF POLYPROTEIN POL-RSVP' 2 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GLGPLQIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTRE WLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHF ; _entity_poly.pdbx_seq_one_letter_code_can ;GLGPLQIWQTNFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTRE WLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 GLY n 1 4 PRO n 1 5 LEU n 1 6 GLN n 1 7 ILE n 1 8 TRP n 1 9 GLN n 1 10 THR n 1 11 ASN n 1 12 PHE n 1 13 THR n 1 14 LEU n 1 15 GLU n 1 16 PRO n 1 17 ARG n 1 18 MET n 1 19 ALA n 1 20 PRO n 1 21 ARG n 1 22 SER n 1 23 TRP n 1 24 LEU n 1 25 ALA n 1 26 VAL n 1 27 THR n 1 28 VAL n 1 29 ASP n 1 30 THR n 1 31 ALA n 1 32 SER n 1 33 SER n 1 34 ALA n 1 35 ILE n 1 36 VAL n 1 37 VAL n 1 38 THR n 1 39 GLN n 1 40 HIS n 1 41 GLY n 1 42 ARG n 1 43 VAL n 1 44 THR n 1 45 SER n 1 46 VAL n 1 47 ALA n 1 48 ALA n 1 49 GLN n 1 50 HIS n 1 51 HIS n 1 52 TRP n 1 53 ALA n 1 54 THR n 1 55 ALA n 1 56 ILE n 1 57 ALA n 1 58 VAL n 1 59 LEU n 1 60 GLY n 1 61 ARG n 1 62 PRO n 1 63 LYS n 1 64 ALA n 1 65 ILE n 1 66 LYS n 1 67 THR n 1 68 ASP n 1 69 ASN n 1 70 GLY n 1 71 SER n 1 72 CYS n 1 73 PHE n 1 74 THR n 1 75 SER n 1 76 LYS n 1 77 SER n 1 78 THR n 1 79 ARG n 1 80 GLU n 1 81 TRP n 1 82 LEU n 1 83 ALA n 1 84 ARG n 1 85 TRP n 1 86 GLY n 1 87 ILE n 1 88 ALA n 1 89 HIS n 1 90 THR n 1 91 THR n 1 92 GLY n 1 93 ILE n 1 94 PRO n 1 95 GLY n 1 96 ASN n 1 97 SER n 1 98 GLN n 1 99 GLY n 1 100 GLN n 1 101 ALA n 1 102 MET n 1 103 VAL n 1 104 GLU n 1 105 ARG n 1 106 ALA n 1 107 ASN n 1 108 ARG n 1 109 LEU n 1 110 LEU n 1 111 LYS n 1 112 ASP n 1 113 LYS n 1 114 ILE n 1 115 ARG n 1 116 VAL n 1 117 LEU n 1 118 ALA n 1 119 GLU n 1 120 GLY n 1 121 ASP n 1 122 GLY n 1 123 PHE n 1 124 MET n 1 125 LYS n 1 126 ARG n 1 127 ILE n 1 128 PRO n 1 129 THR n 1 130 SER n 1 131 LYS n 1 132 GLN n 1 133 GLY n 1 134 GLU n 1 135 LEU n 1 136 LEU n 1 137 ALA n 1 138 LYS n 1 139 ALA n 1 140 MET n 1 141 TYR n 1 142 ALA n 1 143 LEU n 1 144 ASN n 1 145 HIS n 1 146 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Alpharetrovirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Rous sarcoma virus' _entity_src_gen.gene_src_strain 'SCHMIDT-RUPPIN B' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rous sarcoma virus - Schmidt-Ruppin B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269447 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PRC23IN(52-207)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_RSVP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P03354 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;TVALHLAIPLKWKPDHTPVWIDQWPLPEGKLVALTQLVEKELQLGHIEPSLSCWNTPVFVIRKASGSYRLLHDLRAVNAK LVPFGAVQQGAPVLSALPRGWPLMVLDLKDCFFSIPLAEQDREAFAFTLPSVNNQAPARRFQWKVLPQGMTCSPTICQLV VGQVLEPLRLKHPSLCMLHYMDDLLLAASSHDGLEAAGEEVISTLERAGFTISPDKVQREPGVQYLGYKLGSTYVAPVGL VAEPRIATLWDVQKLVGSLQWLRPALGIPPRLMGPFYEQLRGSDPNEAREWNLDMKMAWREIVRLSTTAALERWDPALPL EGAVARCEQGAIGVLGQGLSTHPRPCLWLFSTQPTKAFTAWLEVLTLLITKLRASAVRTFGKEVDILLLPACFREDLPLP EGILLALKGFAGKIRSSDTPSIFDIARPLHVSLKVRVTDHPVPGPTVFTDASSSTHKGVVVWREGPRWEIKEIADLGASV QQLEARAVAMALLLWPTTPTNVVTDSAFVAKMLLKMGQEGVPSTAAAFILEDALSQRSAMAAVLHVRSHSEVPGFFTEGN DVADSQATFQAYPLREAKDLHTALHIGPRALSKACNISMQQAREVVQTCPHCNSAPALEAGVNPRGLGPLQIWQTDFTLE PRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAVQHHWATAIAVLGRPKAIKTDNGSCFTSKSTREWLARWGIAHTTGIPG NSQGQAMVERANRLLKDRIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHFERGENTKTPIQKHWRPTVLTEGPPVKIRI ETGEWEKGWNVLVWGRGYAAVKNRDTDKVIWVPSRKVKPDITQKDEVTKKDEASPLFAGISDWIPWEDEQEGLQGETASN KQERPGEDTLAANES ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VSK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03354 _struct_ref_seq.db_align_beg 626 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 771 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 54 _struct_ref_seq.pdbx_auth_seq_align_end 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1VSK ASN A 11 ? UNP P03354 ASP 636 'engineered mutation' 64 1 1 1VSK ALA A 48 ? UNP P03354 VAL 673 variant 101 2 1 1VSK LYS A 113 ? UNP P03354 ARG 738 variant 166 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VSK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 38 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20% PEG 4000, 10% ISOPROPANOL, 0.1M NA CITRATE PH 5.6' # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAC Science DIP-2000' _diffrn_detector.pdbx_collection_date 1997-10-31 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL SI(111)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VSK _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.15 _reflns.number_obs 10132 _reflns.number_all ? _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0770000 _reflns.pdbx_netI_over_sigmaI 20.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.4 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.21 _reflns_shell.percent_possible_all 96.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.4150000 _reflns_shell.meanI_over_sigI_obs 3.6 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1VSK _refine.ls_number_reflns_obs 8372 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 100000 _refine.pdbx_data_cutoff_low_absF 0.1 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs 88.1 _refine.ls_R_factor_obs 0.1590000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1590000 _refine.ls_R_factor_R_free 0.2490000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10 _refine.ls_number_reflns_R_free 841 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 34.8 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ;ATOMIC OCCUPANCIES OF DISORDERED ATOMS ARE SET TO ZERO IN COORDINATES ; _refine.pdbx_starting_model 'PDB ENTRY 1ASV' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1VSK _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 0.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1231 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 1337 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.84 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.5 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 2.28 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.30 _refine_ls_shell.number_reflns_R_work 812 _refine_ls_shell.R_factor_R_work 0.2210000 _refine_ls_shell.percent_reflns_obs 78.1 _refine_ls_shell.R_factor_R_free 0.2560000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 8.94 _refine_ls_shell.number_reflns_R_free 105 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX_FY.PRO TOPHCSDX_FY.PRO 'X-RAY DIFFRACTION' 2 PARAM19.SOLV TOPH19.SOLV 'X-RAY DIFFRACTION' 3 ? ? 'X-RAY DIFFRACTION' 4 ? ? 'X-RAY DIFFRACTION' # _struct.entry_id 1VSK _struct.title 'ASV INTEGRASE CORE DOMAIN D64N MUTATION IN CITRATE BUFFER PH 6.0' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VSK _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, ENDONUCLEASE, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;THE BIOLOGICAL UNIT IS NOT YET KNOWN. THE MINIMUM MULTIMER IS BELIEVED TO CONTAIN AT LEAST THIS DIMER, SHOWN IN BOTH HIV-1 AND ASV INTEGRASE CORE DOMAIN STRUCTURES. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 16 ? MET A 18 ? PRO A 69 MET A 71 5 ? 3 HELX_P HELX_P2 2 SER A 45 ? LEU A 59 ? SER A 98 LEU A 112 1 ? 15 HELX_P HELX_P3 3 SER A 71 ? THR A 74 ? SER A 124 THR A 127 1 ? 4 HELX_P HELX_P4 4 LYS A 76 ? TRP A 85 ? LYS A 129 TRP A 138 1 ? 10 HELX_P HELX_P5 5 SER A 97 ? ASP A 121 ? SER A 150 ASP A 174 1 ? 25 HELX_P HELX_P6 6 THR A 129 ? ASN A 144 ? THR A 182 ASN A 197 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 19 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 72 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 20 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 73 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 11.37 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 35 ? HIS A 40 ? ILE A 88 HIS A 93 A 2 TRP A 23 ? ASP A 29 ? TRP A 76 ASP A 82 A 3 ILE A 7 ? LEU A 14 ? ILE A 60 LEU A 67 A 4 ALA A 64 ? LYS A 66 ? ALA A 117 LYS A 119 A 5 ALA A 88 ? THR A 90 ? ALA A 141 THR A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 36 ? O VAL A 89 N THR A 27 ? N THR A 80 A 2 3 O LEU A 24 ? O LEU A 77 N THR A 13 ? N THR A 66 A 3 4 O TRP A 8 ? O TRP A 61 N ALA A 64 ? N ALA A 117 A 4 5 O ILE A 65 ? O ILE A 118 N ALA A 88 ? N ALA A 141 # _struct_site.id ACT _struct_site.pdbx_evidence_code Author _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'ACTIVE SITE.' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 ACT 3 ASN A 11 ? ASN A 64 . ? 1_555 ? 2 ACT 3 ASP A 68 ? ASP A 121 . ? 1_555 ? 3 ACT 3 GLU A 104 ? GLU A 157 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VSK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VSK _atom_sites.fract_transf_matrix[1][1] 0.014890 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014890 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012555 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 54 54 GLY GLY A . n A 1 2 LEU 2 55 55 LEU LEU A . n A 1 3 GLY 3 56 56 GLY GLY A . n A 1 4 PRO 4 57 57 PRO PRO A . n A 1 5 LEU 5 58 58 LEU LEU A . n A 1 6 GLN 6 59 59 GLN GLN A . n A 1 7 ILE 7 60 60 ILE ILE A . n A 1 8 TRP 8 61 61 TRP TRP A . n A 1 9 GLN 9 62 62 GLN GLN A . n A 1 10 THR 10 63 63 THR THR A . n A 1 11 ASN 11 64 64 ASN ASN A . n A 1 12 PHE 12 65 65 PHE PHE A . n A 1 13 THR 13 66 66 THR THR A . n A 1 14 LEU 14 67 67 LEU LEU A . n A 1 15 GLU 15 68 68 GLU GLU A . n A 1 16 PRO 16 69 69 PRO PRO A . n A 1 17 ARG 17 70 70 ARG ARG A . n A 1 18 MET 18 71 71 MET MET A . n A 1 19 ALA 19 72 72 ALA ALA A . n A 1 20 PRO 20 73 73 PRO PRO A . n A 1 21 ARG 21 74 74 ARG ARG A . n A 1 22 SER 22 75 75 SER SER A . n A 1 23 TRP 23 76 76 TRP TRP A . n A 1 24 LEU 24 77 77 LEU LEU A . n A 1 25 ALA 25 78 78 ALA ALA A . n A 1 26 VAL 26 79 79 VAL VAL A . n A 1 27 THR 27 80 80 THR THR A . n A 1 28 VAL 28 81 81 VAL VAL A . n A 1 29 ASP 29 82 82 ASP ASP A . n A 1 30 THR 30 83 83 THR THR A . n A 1 31 ALA 31 84 84 ALA ALA A . n A 1 32 SER 32 85 85 SER SER A . n A 1 33 SER 33 86 86 SER SER A . n A 1 34 ALA 34 87 87 ALA ALA A . n A 1 35 ILE 35 88 88 ILE ILE A . n A 1 36 VAL 36 89 89 VAL VAL A . n A 1 37 VAL 37 90 90 VAL VAL A . n A 1 38 THR 38 91 91 THR THR A . n A 1 39 GLN 39 92 92 GLN GLN A . n A 1 40 HIS 40 93 93 HIS HIS A . n A 1 41 GLY 41 94 94 GLY GLY A . n A 1 42 ARG 42 95 95 ARG ARG A . n A 1 43 VAL 43 96 96 VAL VAL A . n A 1 44 THR 44 97 97 THR THR A . n A 1 45 SER 45 98 98 SER SER A . n A 1 46 VAL 46 99 99 VAL VAL A . n A 1 47 ALA 47 100 100 ALA ALA A . n A 1 48 ALA 48 101 101 ALA ALA A . n A 1 49 GLN 49 102 102 GLN GLN A . n A 1 50 HIS 50 103 103 HIS HIS A . n A 1 51 HIS 51 104 104 HIS HIS A . n A 1 52 TRP 52 105 105 TRP TRP A . n A 1 53 ALA 53 106 106 ALA ALA A . n A 1 54 THR 54 107 107 THR THR A . n A 1 55 ALA 55 108 108 ALA ALA A . n A 1 56 ILE 56 109 109 ILE ILE A . n A 1 57 ALA 57 110 110 ALA ALA A . n A 1 58 VAL 58 111 111 VAL VAL A . n A 1 59 LEU 59 112 112 LEU LEU A . n A 1 60 GLY 60 113 113 GLY GLY A . n A 1 61 ARG 61 114 114 ARG ARG A . n A 1 62 PRO 62 115 115 PRO PRO A . n A 1 63 LYS 63 116 116 LYS LYS A . n A 1 64 ALA 64 117 117 ALA ALA A . n A 1 65 ILE 65 118 118 ILE ILE A . n A 1 66 LYS 66 119 119 LYS LYS A . n A 1 67 THR 67 120 120 THR THR A . n A 1 68 ASP 68 121 121 ASP ASP A . n A 1 69 ASN 69 122 122 ASN ASN A . n A 1 70 GLY 70 123 123 GLY GLY A . n A 1 71 SER 71 124 124 SER SER A . n A 1 72 CYS 72 125 125 CYS CYS A . n A 1 73 PHE 73 126 126 PHE PHE A . n A 1 74 THR 74 127 127 THR THR A . n A 1 75 SER 75 128 128 SER SER A . n A 1 76 LYS 76 129 129 LYS LYS A . n A 1 77 SER 77 130 130 SER SER A . n A 1 78 THR 78 131 131 THR THR A . n A 1 79 ARG 79 132 132 ARG ARG A . n A 1 80 GLU 80 133 133 GLU GLU A . n A 1 81 TRP 81 134 134 TRP TRP A . n A 1 82 LEU 82 135 135 LEU LEU A . n A 1 83 ALA 83 136 136 ALA ALA A . n A 1 84 ARG 84 137 137 ARG ARG A . n A 1 85 TRP 85 138 138 TRP TRP A . n A 1 86 GLY 86 139 139 GLY GLY A . n A 1 87 ILE 87 140 140 ILE ILE A . n A 1 88 ALA 88 141 141 ALA ALA A . n A 1 89 HIS 89 142 142 HIS HIS A . n A 1 90 THR 90 143 143 THR THR A . n A 1 91 THR 91 144 144 THR THR A . n A 1 92 GLY 92 145 145 GLY GLY A . n A 1 93 ILE 93 146 146 ILE ILE A . n A 1 94 PRO 94 147 147 PRO PRO A . n A 1 95 GLY 95 148 148 GLY GLY A . n A 1 96 ASN 96 149 149 ASN ASN A . n A 1 97 SER 97 150 150 SER SER A . n A 1 98 GLN 98 151 151 GLN GLN A . n A 1 99 GLY 99 152 152 GLY GLY A . n A 1 100 GLN 100 153 153 GLN GLN A . n A 1 101 ALA 101 154 154 ALA ALA A . n A 1 102 MET 102 155 155 MET MET A . n A 1 103 VAL 103 156 156 VAL VAL A . n A 1 104 GLU 104 157 157 GLU GLU A . n A 1 105 ARG 105 158 158 ARG ARG A . n A 1 106 ALA 106 159 159 ALA ALA A . n A 1 107 ASN 107 160 160 ASN ASN A . n A 1 108 ARG 108 161 161 ARG ARG A . n A 1 109 LEU 109 162 162 LEU LEU A . n A 1 110 LEU 110 163 163 LEU LEU A . n A 1 111 LYS 111 164 164 LYS LYS A . n A 1 112 ASP 112 165 165 ASP ASP A . n A 1 113 LYS 113 166 166 LYS LYS A . n A 1 114 ILE 114 167 167 ILE ILE A . n A 1 115 ARG 115 168 168 ARG ARG A . n A 1 116 VAL 116 169 169 VAL VAL A . n A 1 117 LEU 117 170 170 LEU LEU A . n A 1 118 ALA 118 171 171 ALA ALA A . n A 1 119 GLU 119 172 172 GLU GLU A . n A 1 120 GLY 120 173 173 GLY GLY A . n A 1 121 ASP 121 174 174 ASP ASP A . n A 1 122 GLY 122 175 175 GLY GLY A . n A 1 123 PHE 123 176 176 PHE PHE A . n A 1 124 MET 124 177 177 MET MET A . n A 1 125 LYS 125 178 178 LYS LYS A . n A 1 126 ARG 126 179 179 ARG ARG A . n A 1 127 ILE 127 180 180 ILE ILE A . n A 1 128 PRO 128 181 181 PRO PRO A . n A 1 129 THR 129 182 182 THR THR A . n A 1 130 SER 130 183 183 SER SER A . n A 1 131 LYS 131 184 184 LYS LYS A . n A 1 132 GLN 132 185 185 GLN GLN A . n A 1 133 GLY 133 186 186 GLY GLY A . n A 1 134 GLU 134 187 187 GLU GLU A . n A 1 135 LEU 135 188 188 LEU LEU A . n A 1 136 LEU 136 189 189 LEU LEU A . n A 1 137 ALA 137 190 190 ALA ALA A . n A 1 138 LYS 138 191 191 LYS LYS A . n A 1 139 ALA 139 192 192 ALA ALA A . n A 1 140 MET 140 193 193 MET MET A . n A 1 141 TYR 141 194 194 TYR TYR A . n A 1 142 ALA 142 195 195 ALA ALA A . n A 1 143 LEU 143 196 196 LEU LEU A . n A 1 144 ASN 144 197 197 ASN ASN A . n A 1 145 HIS 145 198 198 HIS HIS A . n A 1 146 PHE 146 199 199 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 201 201 HOH HOH A . B 2 HOH 2 202 202 HOH HOH A . B 2 HOH 3 203 203 HOH HOH A . B 2 HOH 4 204 204 HOH HOH A . B 2 HOH 5 205 205 HOH HOH A . B 2 HOH 6 206 206 HOH HOH A . B 2 HOH 7 207 207 HOH HOH A . B 2 HOH 8 208 208 HOH HOH A . B 2 HOH 9 209 209 HOH HOH A . B 2 HOH 10 210 210 HOH HOH A . B 2 HOH 11 211 211 HOH HOH A . B 2 HOH 12 212 212 HOH HOH A . B 2 HOH 13 213 213 HOH HOH A . B 2 HOH 14 214 214 HOH HOH A . B 2 HOH 15 215 215 HOH HOH A . B 2 HOH 16 216 216 HOH HOH A . B 2 HOH 17 217 217 HOH HOH A . B 2 HOH 18 218 218 HOH HOH A . B 2 HOH 19 219 219 HOH HOH A . B 2 HOH 20 220 220 HOH HOH A . B 2 HOH 21 221 221 HOH HOH A . B 2 HOH 22 222 222 HOH HOH A . B 2 HOH 23 224 224 HOH HOH A . B 2 HOH 24 225 225 HOH HOH A . B 2 HOH 25 226 226 HOH HOH A . B 2 HOH 26 228 228 HOH HOH A . B 2 HOH 27 229 229 HOH HOH A . B 2 HOH 28 230 230 HOH HOH A . B 2 HOH 29 231 231 HOH HOH A . B 2 HOH 30 232 232 HOH HOH A . B 2 HOH 31 233 233 HOH HOH A . B 2 HOH 32 235 235 HOH HOH A . B 2 HOH 33 236 236 HOH HOH A . B 2 HOH 34 237 237 HOH HOH A . B 2 HOH 35 239 239 HOH HOH A . B 2 HOH 36 241 241 HOH HOH A . B 2 HOH 37 242 242 HOH HOH A . B 2 HOH 38 243 243 HOH HOH A . B 2 HOH 39 244 244 HOH HOH A . B 2 HOH 40 246 246 HOH HOH A . B 2 HOH 41 247 247 HOH HOH A . B 2 HOH 42 249 249 HOH HOH A . B 2 HOH 43 250 250 HOH HOH A . B 2 HOH 44 251 251 HOH HOH A . B 2 HOH 45 252 252 HOH HOH A . B 2 HOH 46 253 253 HOH HOH A . B 2 HOH 47 254 254 HOH HOH A . B 2 HOH 48 255 255 HOH HOH A . B 2 HOH 49 259 259 HOH HOH A . B 2 HOH 50 260 260 HOH HOH A . B 2 HOH 51 261 261 HOH HOH A . B 2 HOH 52 262 262 HOH HOH A . B 2 HOH 53 263 263 HOH HOH A . B 2 HOH 54 264 264 HOH HOH A . B 2 HOH 55 266 266 HOH HOH A . B 2 HOH 56 267 267 HOH HOH A . B 2 HOH 57 268 268 HOH HOH A . B 2 HOH 58 269 269 HOH HOH A . B 2 HOH 59 270 270 HOH HOH A . B 2 HOH 60 271 271 HOH HOH A . B 2 HOH 61 273 273 HOH HOH A . B 2 HOH 62 275 275 HOH HOH A . B 2 HOH 63 276 276 HOH HOH A . B 2 HOH 64 277 277 HOH HOH A . B 2 HOH 65 278 278 HOH HOH A . B 2 HOH 66 280 280 HOH HOH A . B 2 HOH 67 285 285 HOH HOH A . B 2 HOH 68 286 286 HOH HOH A . B 2 HOH 69 287 287 HOH HOH A . B 2 HOH 70 288 288 HOH HOH A . B 2 HOH 71 289 289 HOH HOH A . B 2 HOH 72 291 291 HOH HOH A . B 2 HOH 73 292 292 HOH HOH A . B 2 HOH 74 294 294 HOH HOH A . B 2 HOH 75 296 296 HOH HOH A . B 2 HOH 76 297 297 HOH HOH A . B 2 HOH 77 300 300 HOH HOH A . B 2 HOH 78 302 302 HOH HOH A . B 2 HOH 79 303 303 HOH HOH A . B 2 HOH 80 304 304 HOH HOH A . B 2 HOH 81 305 305 HOH HOH A . B 2 HOH 82 306 306 HOH HOH A . B 2 HOH 83 307 307 HOH HOH A . B 2 HOH 84 308 308 HOH HOH A . B 2 HOH 85 310 310 HOH HOH A . B 2 HOH 86 312 312 HOH HOH A . B 2 HOH 87 313 313 HOH HOH A . B 2 HOH 88 314 314 HOH HOH A . B 2 HOH 89 315 315 HOH HOH A . B 2 HOH 90 318 318 HOH HOH A . B 2 HOH 91 321 321 HOH HOH A . B 2 HOH 92 322 322 HOH HOH A . B 2 HOH 93 323 323 HOH HOH A . B 2 HOH 94 326 326 HOH HOH A . B 2 HOH 95 327 327 HOH HOH A . B 2 HOH 96 328 328 HOH HOH A . B 2 HOH 97 331 331 HOH HOH A . B 2 HOH 98 332 332 HOH HOH A . B 2 HOH 99 337 337 HOH HOH A . B 2 HOH 100 339 339 HOH HOH A . B 2 HOH 101 340 340 HOH HOH A . B 2 HOH 102 341 341 HOH HOH A . B 2 HOH 103 342 342 HOH HOH A . B 2 HOH 104 345 345 HOH HOH A . B 2 HOH 105 346 346 HOH HOH A . B 2 HOH 106 347 347 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 79.6510000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-12-02 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' Other 5 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' struct_ref_seq_dif 4 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _pdbx_entry_details.entry_id 1VSK _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, ROUS SARCOMA VIRUS SCHMIDT-RUPPIN B, COMPARED TO "POL-RSVP" SEQUENCE DIFFERS AT TWO POSITIONS WITH THE CONSERVATIVE AMINO ACID RESIDUE DIFFERENCES NOTED (VAL->ALA 101 AND ARG-> LYS 166). MUTATION D64N ENGINEERED FOR THIS STUDY. ALA 101, VIRAL STRAIN DIFFERENCES LYS 166, VIRAL STRAIN DIFFERENCES ASN 64, ENGINEERED MUTATION FOR THIS STUDY ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A HIS 142 ? ? CD2 A HIS 142 ? ? 1.412 1.354 0.058 0.009 N 2 1 CG A HIS 198 ? ? CD2 A HIS 198 ? ? 1.452 1.354 0.098 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CE1 A HIS 93 ? ? NE2 A HIS 93 ? ? CD2 A HIS 93 ? ? 114.92 109.00 5.92 0.70 N 2 1 CE1 A HIS 104 ? ? NE2 A HIS 104 ? ? CD2 A HIS 104 ? ? 113.69 109.00 4.69 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 55 ? ? -144.10 -33.08 2 1 THR A 144 ? ? -108.68 -168.98 3 1 PRO A 147 ? ? -39.17 137.32 4 1 ASN A 149 ? ? -43.21 107.92 5 1 GLN A 151 ? ? -33.14 -73.95 6 1 LYS A 178 ? ? -116.03 -111.65 7 1 HIS A 198 ? ? -97.42 58.09 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ASV _pdbx_initial_refinement_model.details 'PDB ENTRY 1ASV' #