data_1VTD
# 
_entry.id   1VTD 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.383 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1VTD         pdb_00001vtd 10.2210/pdb1vtd/pdb 
NDB   BDL018       ?            ?                   
RCSB  RCSB003037   ?            ?                   
WWPDB D_1000003037 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2011-07-13 
2 'Structure model' 1 1 2018-05-30 
3 'Structure model' 1 2 2018-10-10 
4 'Structure model' 1 3 2023-12-27 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'     
2 2 'Structure model' 'Source and taxonomy' 
3 2 'Structure model' 'Structure summary'   
4 3 'Structure model' 'Data collection'     
5 3 'Structure model' 'Database references' 
6 4 'Structure model' 'Data collection'     
7 4 'Structure model' 'Database references' 
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 2 'Structure model' entity              
2 2 'Structure model' pdbx_entity_src_syn 
3 2 'Structure model' reflns              
4 3 'Structure model' citation            
5 3 'Structure model' citation_author     
6 4 'Structure model' chem_comp_atom      
7 4 'Structure model' chem_comp_bond      
8 4 'Structure model' database_2          
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  2 'Structure model' '_entity.src_method'                  
2  2 'Structure model' '_reflns.d_resolution_high'           
3  2 'Structure model' '_reflns.d_resolution_low'            
4  3 'Structure model' '_citation.journal_abbrev'            
5  3 'Structure model' '_citation.pdbx_database_id_DOI'      
6  3 'Structure model' '_citation.pdbx_database_id_PubMed'   
7  3 'Structure model' '_citation.title'                     
8  3 'Structure model' '_citation_author.name'               
9  4 'Structure model' '_database_2.pdbx_DOI'                
10 4 'Structure model' '_database_2.pdbx_database_accession' 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1VTD 
_pdbx_database_status.recvd_initial_deposition_date   1996-12-12 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Timsit, Y.'    1 
'Westhof, E.'   2 
'Fuchs, R.P.P.' 3 
'Moras, D.'     4 
# 
loop_
_citation.id 
_citation.title 
_citation.journal_abbrev 
_citation.journal_volume 
_citation.page_first 
_citation.page_last 
_citation.year 
_citation.journal_id_ASTM 
_citation.country 
_citation.journal_id_ISSN 
_citation.journal_id_CSD 
_citation.book_publisher 
_citation.pdbx_database_id_PubMed 
_citation.pdbx_database_id_DOI 
primary 'Unusual helical packing in crystals of DNA bearing a mutation hot spot.'             Nature          341 459 462 1989 
NATUAS UK 0028-0836 0006 ? 2797169 10.1038/341459a0       
1       'Self-fitting and self-modifying properties of the B-DNA molecule.'                   'J. Mol. Biol.' 251 629 647 1995 
JMOBAK UK 0022-2836 0070 ? 7666416 10.1006/jmbi.1995.0461 
2       'Base-pairing shift in the major groove of (CA)n tracts by B-DNA crystal structures.' Nature          354 167 170 1991 
NATUAS UK 0028-0836 0006 ? 1944598 10.1038/354167a0       
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Timsit, Y.'  1 ? 
primary 'Westhof, E.' 2 ? 
primary 'Fuchs, R.P.' 3 ? 
primary 'Moras, D.'   4 ? 
1       'Timsit, Y.'  5 ? 
1       'Moras, D.'   6 ? 
2       'Timsit, Y.'  7 ? 
2       'Vilbois, E.' 8 ? 
2       'Moras, D.'   9 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn 
;DNA (5'-D(*AP*CP*CP*GP*GP*CP*GP*CP*CP*AP*CP*A)-3')
;
3617.371 1 ? ? ? ? 
2 polymer syn 
;DNA (5'-D(*TP*GP*TP*GP*GP*CP*GP*CP*CP*GP*GP*T)-3')
;
3710.401 1 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DA)(DC)(DA)' ACCGGCGCCACA A ? 
2 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DG)(DT)' TGTGGCGCCGGT B ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DA n 
1 2  DC n 
1 3  DC n 
1 4  DG n 
1 5  DG n 
1 6  DC n 
1 7  DG n 
1 8  DC n 
1 9  DC n 
1 10 DA n 
1 11 DC n 
1 12 DA n 
2 1  DT n 
2 2  DG n 
2 3  DT n 
2 4  DG n 
2 5  DG n 
2 6  DC n 
2 7  DG n 
2 8  DC n 
2 9  DC n 
2 10 DG n 
2 11 DG n 
2 12 DT n 
# 
loop_
_pdbx_entity_src_syn.entity_id 
_pdbx_entity_src_syn.pdbx_src_id 
_pdbx_entity_src_syn.pdbx_alt_source_flag 
_pdbx_entity_src_syn.pdbx_beg_seq_num 
_pdbx_entity_src_syn.pdbx_end_seq_num 
_pdbx_entity_src_syn.organism_scientific 
_pdbx_entity_src_syn.organism_common_name 
_pdbx_entity_src_syn.ncbi_taxonomy_id 
_pdbx_entity_src_syn.details 
1 1 sample ? ? 'synthetic construct' ? 32630 ? 
2 1 sample ? ? 'synthetic construct' ? 32630 ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DA 1  1  1  DA A A . n 
A 1 2  DC 2  2  2  DC C A . n 
A 1 3  DC 3  3  3  DC C A . n 
A 1 4  DG 4  4  4  DG G A . n 
A 1 5  DG 5  5  5  DG G A . n 
A 1 6  DC 6  6  6  DC C A . n 
A 1 7  DG 7  7  7  DG G A . n 
A 1 8  DC 8  8  8  DC C A . n 
A 1 9  DC 9  9  9  DC C A . n 
A 1 10 DA 10 10 10 DA A A . n 
A 1 11 DC 11 11 11 DC C A . n 
A 1 12 DA 12 12 12 DA A A . n 
B 2 1  DT 1  13 13 DT T B . n 
B 2 2  DG 2  14 14 DG G B . n 
B 2 3  DT 3  15 15 DT T B . n 
B 2 4  DG 4  16 16 DG G B . n 
B 2 5  DG 5  17 17 DG G B . n 
B 2 6  DC 6  18 18 DC C B . n 
B 2 7  DG 7  19 19 DG G B . n 
B 2 8  DC 8  20 20 DC C B . n 
B 2 9  DC 9  21 21 DC C B . n 
B 2 10 DG 10 22 22 DG G B . n 
B 2 11 DG 11 23 23 DG G B . n 
B 2 12 DT 12 24 24 DT T B . n 
# 
_software.name             NUCLSQ 
_software.classification   refinement 
_software.version          . 
_software.citation_id      ? 
_software.pdbx_ordinal     1 
# 
_cell.entry_id           1VTD 
_cell.length_a           65.900 
_cell.length_b           65.900 
_cell.length_c           47.100 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        120.00 
_cell.Z_PDB              9 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         1VTD 
_symmetry.space_group_name_H-M             'H 3' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                146 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          1VTD 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   54.21 
_exptl_crystal.density_Matthews      2.69 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.temp            277.00 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              6.10 
_exptl_crystal_grow.pdbx_details    'pH 6.10, VAPOR DIFFUSION, temperature 277.00K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 WATER        1  2  3  
1 2 1 CACODYLATE   4  5  6  
1 3 1 SPERMINE     7  8  9  
1 4 1 'MG ACETATE' 10 11 12 
1 5 2 WATER        13 14 15 
1 6 2 MPD          16 17 18 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           273.00 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               DIFFRACTOMETER 
_diffrn_detector.type                   NICOLET 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_reflns.entry_id                     1VTD 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   1.000 
_reflns.d_resolution_low             10 
_reflns.d_resolution_high            2.8 
_reflns.number_obs                   1584 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         ? 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_CC_half                 ? 
_reflns.pdbx_Rpim_I_all              ? 
_reflns.pdbx_Rrim_I_all              ? 
# 
_refine.entry_id                                 1VTD 
_refine.ls_number_reflns_obs                     1101 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          3.000 
_refine.pdbx_ls_sigma_F                          ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             10.000 
_refine.ls_d_res_high                            2.800 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_obs                          0.1530000 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       ? 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 ? 
_refine.ls_number_reflns_R_free                  ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   486 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             0 
_refine_hist.number_atoms_total               486 
_refine_hist.d_res_high                       2.800 
_refine_hist.d_res_low                        10.000 
# 
_database_PDB_matrix.entry_id          1VTD 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1VTD 
_struct.title                     'UNUSUAL HELICAL PACKING IN CRYSTALS OF DNA BEARING A MUTATION HOT SPOT' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1VTD 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'B-DNA, DOUBLE HELIX, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
# 
loop_
_struct_ref.id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.entity_id 
_struct_ref.pdbx_align_begin 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_db_isoform 
1 PDB 1VTD 1VTD 1 ? ? ? 
2 PDB 1VTD 1VTD 2 ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1VTD A 1 ? 12 ? 1VTD 1  ? 12 ? 1  12 
2 2 1VTD B 1 ? 12 ? 1VTD 13 ? 24 ? 13 24 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              software_defined_assembly 
_pdbx_struct_assembly.method_details       PISA 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
loop_
_pdbx_struct_assembly_prop.biol_id 
_pdbx_struct_assembly_prop.type 
_pdbx_struct_assembly_prop.value 
_pdbx_struct_assembly_prop.details 
1 'ABSA (A^2)' 1050 ? 
1 MORE         -6   ? 
1 'SSA (A^2)'  4650 ? 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
hydrog1  hydrog ? ? A DA 1  N1 ? ? ? 1_555 B DG 11 N1 ? ? A DA 1  B DG 23 1_555 ? ? ? ? ? ? TYPE_8_PAIR     ? ? ? 
hydrog2  hydrog ? ? A DA 1  N6 ? ? ? 1_555 B DG 11 O6 ? ? A DA 1  B DG 23 1_555 ? ? ? ? ? ? TYPE_8_PAIR     ? ? ? 
hydrog3  hydrog ? ? A DC 2  N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 2  B DG 22 1_555 ? ? ? ? ? ? 'DC-DG PAIR'    ? ? ? 
hydrog4  hydrog ? ? A DC 2  O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2  B DG 23 1_555 ? ? ? ? ? ? 'DC-DG PAIR'    ? ? ? 
hydrog5  hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC 8  N3 ? ? A DG 4  B DC 20 1_555 ? ? ? ? ? ? 'DG-DC PAIR'    ? ? ? 
hydrog6  hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC 9  O2 ? ? A DG 4  B DC 21 1_555 ? ? ? ? ? ? 'DG-DC PAIR'    ? ? ? 
hydrog7  hydrog ? ? A DG 5  N1 ? ? ? 1_555 B DC 8  O2 ? ? A DG 5  B DC 20 1_555 ? ? ? ? ? ? 'DG-DC PAIR'    ? ? ? 
hydrog8  hydrog ? ? A DC 6  O2 ? ? ? 1_555 B DG 7  N2 ? ? A DC 6  B DG 19 1_555 ? ? ? ? ? ? 'DC-DG PAIR'    ? ? ? 
hydrog9  hydrog ? ? A DG 7  N1 ? ? ? 1_555 B DG 5  O6 ? ? A DG 7  B DG 17 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? 
hydrog10 hydrog ? ? A DG 7  N2 ? ? ? 1_555 B DC 6  O2 ? ? A DG 7  B DC 18 1_555 ? ? ? ? ? ? 'DG-DC PAIR'    ? ? ? 
hydrog11 hydrog ? ? A DC 8  N4 ? ? ? 1_555 B DG 4  O6 ? ? A DC 8  B DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR'    ? ? ? 
hydrog12 hydrog ? ? A DC 8  O2 ? ? ? 1_555 B DG 5  N2 ? ? A DC 8  B DG 17 1_555 ? ? ? ? ? ? 'DC-DG PAIR'    ? ? ? 
hydrog13 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B DT 3  N3 ? ? A DC 9  B DT 15 1_555 ? ? ? ? ? ? TYPE_18_PAIR    ? ? ? 
hydrog14 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B DT 3  O4 ? ? A DC 9  B DT 15 1_555 ? ? ? ? ? ? TYPE_18_PAIR    ? ? ? 
hydrog15 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B DG 4  N1 ? ? A DC 9  B DG 16 1_555 ? ? ? ? ? ? 'DC-DG PAIR'    ? ? ? 
hydrog16 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DG 2  N1 ? ? A DA 10 B DG 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR     ? ? ? 
hydrog17 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DG 2  O6 ? ? A DA 10 B DG 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR     ? ? ? 
hydrog18 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DT 1  O4 ? ? A DC 11 B DT 13 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? 
hydrog19 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2  N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? 'DC-DG PAIR'    ? ? ? 
# 
_struct_conn_type.id          hydrog 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 "O3'" A DG 4  ? ? P     A DG 5  ? ? 1.520 1.607 -0.087 0.012 Y 
2 1 "O3'" A DC 9  ? ? P     A DA 10 ? ? 1.534 1.607 -0.073 0.012 Y 
3 1 P     A DA 10 ? ? "O5'" A DA 10 ? ? 1.669 1.593 0.076  0.010 N 
4 1 "O3'" B DT 15 ? ? P     B DG 16 ? ? 1.520 1.607 -0.087 0.012 Y 
5 1 "O3'" B DG 16 ? ? "C3'" B DG 16 ? ? 1.334 1.419 -0.085 0.006 N 
6 1 C2    B DC 20 ? ? N3    B DC 20 ? ? 1.408 1.353 0.055  0.008 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DA 1  ? ? "C4'" A DA 1  ? ? "C3'" A DA 1  ? ? 99.82  104.50 -4.68  0.40 N 
2  1 "C5'" A DA 1  ? ? "C4'" A DA 1  ? ? "O4'" A DA 1  ? ? 116.52 109.80 6.72   1.10 N 
3  1 "C4'" A DA 1  ? ? "C3'" A DA 1  ? ? "C2'" A DA 1  ? ? 97.01  102.20 -5.19  0.70 N 
4  1 "O4'" A DA 1  ? ? "C1'" A DA 1  ? ? N9    A DA 1  ? ? 101.88 108.00 -6.12  0.70 N 
5  1 C5    A DA 1  ? ? C6    A DA 1  ? ? N1    A DA 1  ? ? 114.44 117.70 -3.26  0.50 N 
6  1 "O4'" A DC 2  ? ? "C1'" A DC 2  ? ? N1    A DC 2  ? ? 102.03 108.00 -5.97  0.70 N 
7  1 "C3'" A DC 3  ? ? "O3'" A DC 3  ? ? P     A DG 4  ? ? 130.15 119.70 10.45  1.20 Y 
8  1 "O3'" A DC 3  ? ? P     A DG 4  ? ? OP2   A DG 4  ? ? 117.22 110.50 6.72   1.10 Y 
9  1 OP1   A DG 4  ? ? P     A DG 4  ? ? OP2   A DG 4  ? ? 110.21 119.60 -9.39  1.50 N 
10 1 "O4'" A DG 4  ? ? "C1'" A DG 4  ? ? N9    A DG 4  ? ? 115.53 108.30 7.23   0.30 N 
11 1 C6    A DG 4  ? ? N1    A DG 4  ? ? C2    A DG 4  ? ? 116.81 125.10 -8.29  0.60 N 
12 1 N1    A DG 4  ? ? C2    A DG 4  ? ? N3    A DG 4  ? ? 128.79 123.90 4.89   0.60 N 
13 1 C5    A DG 4  ? ? C6    A DG 4  ? ? N1    A DG 4  ? ? 116.82 111.50 5.32   0.50 N 
14 1 C5    A DG 4  ? ? C6    A DG 4  ? ? O6    A DG 4  ? ? 122.26 128.60 -6.34  0.60 N 
15 1 "C3'" A DG 4  ? ? "O3'" A DG 4  ? ? P     A DG 5  ? ? 136.68 119.70 16.98  1.20 Y 
16 1 OP1   A DG 5  ? ? P     A DG 5  ? ? OP2   A DG 5  ? ? 109.49 119.60 -10.11 1.50 N 
17 1 "O4'" A DG 5  ? ? "C1'" A DG 5  ? ? N9    A DG 5  ? ? 114.99 108.30 6.69   0.30 N 
18 1 C6    A DG 5  ? ? N1    A DG 5  ? ? C2    A DG 5  ? ? 120.96 125.10 -4.14  0.60 N 
19 1 C5    A DG 5  ? ? C6    A DG 5  ? ? N1    A DG 5  ? ? 115.25 111.50 3.75   0.50 N 
20 1 "C3'" A DG 5  ? ? "O3'" A DG 5  ? ? P     A DC 6  ? ? 132.59 119.70 12.89  1.20 Y 
21 1 "O3'" A DG 5  ? ? P     A DC 6  ? ? OP2   A DC 6  ? ? 117.84 110.50 7.34   1.10 Y 
22 1 OP1   A DC 6  ? ? P     A DC 6  ? ? OP2   A DC 6  ? ? 109.32 119.60 -10.28 1.50 N 
23 1 "O4'" A DG 7  ? ? "C1'" A DG 7  ? ? N9    A DG 7  ? ? 113.64 108.30 5.34   0.30 N 
24 1 "O3'" A DG 7  ? ? P     A DC 8  ? ? "O5'" A DC 8  ? ? 91.29  104.00 -12.71 1.90 Y 
25 1 "O3'" A DG 7  ? ? P     A DC 8  ? ? OP2   A DC 8  ? ? 117.70 110.50 7.20   1.10 Y 
26 1 "O4'" A DC 8  ? ? "C1'" A DC 8  ? ? N1    A DC 8  ? ? 114.06 108.30 5.76   0.30 N 
27 1 N3    A DC 8  ? ? C4    A DC 8  ? ? C5    A DC 8  ? ? 119.49 121.90 -2.41  0.40 N 
28 1 N3    A DC 9  ? ? C4    A DC 9  ? ? N4    A DC 9  ? ? 124.74 118.00 6.74   0.70 N 
29 1 C5    A DC 9  ? ? C4    A DC 9  ? ? N4    A DC 9  ? ? 113.75 120.20 -6.45  0.70 N 
30 1 "C3'" A DC 9  ? ? "O3'" A DC 9  ? ? P     A DA 10 ? ? 149.45 119.70 29.75  1.20 Y 
31 1 P     A DA 10 ? ? "O5'" A DA 10 ? ? "C5'" A DA 10 ? ? 109.76 120.90 -11.14 1.60 N 
32 1 N9    A DA 10 ? ? "C1'" A DA 10 ? ? "C2'" A DA 10 ? ? 100.50 112.60 -12.10 1.90 N 
33 1 N1    A DA 10 ? ? C6    A DA 10 ? ? N6    A DA 10 ? ? 122.36 118.60 3.76   0.60 N 
34 1 "C3'" A DA 10 ? ? "O3'" A DA 10 ? ? P     A DC 11 ? ? 109.92 119.70 -9.78  1.20 Y 
35 1 "O5'" A DC 11 ? ? P     A DC 11 ? ? OP1   A DC 11 ? ? 119.95 110.70 9.25   1.20 N 
36 1 "O4'" A DC 11 ? ? "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? 101.92 104.50 -2.58  0.40 N 
37 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1    A DC 11 ? ? 120.33 108.30 12.03  0.30 N 
38 1 N3    A DC 11 ? ? C4    A DC 11 ? ? C5    A DC 11 ? ? 119.45 121.90 -2.45  0.40 N 
39 1 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9    A DA 12 ? ? 111.72 108.30 3.42   0.30 N 
40 1 C5    A DA 12 ? ? C6    A DA 12 ? ? N1    A DA 12 ? ? 114.61 117.70 -3.09  0.50 N 
41 1 C2    B DT 13 ? ? N3    B DT 13 ? ? C4    B DT 13 ? ? 122.33 127.20 -4.87  0.60 N 
42 1 N3    B DT 13 ? ? C4    B DT 13 ? ? C5    B DT 13 ? ? 118.94 115.20 3.74   0.60 N 
43 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9    B DG 14 ? ? 114.72 108.30 6.42   0.30 N 
44 1 C5    B DG 14 ? ? C6    B DG 14 ? ? N1    B DG 14 ? ? 114.90 111.50 3.40   0.50 N 
45 1 "C3'" B DG 14 ? ? "O3'" B DG 14 ? ? P     B DT 15 ? ? 111.05 119.70 -8.65  1.20 Y 
46 1 "O5'" B DT 15 ? ? P     B DT 15 ? ? OP1   B DT 15 ? ? 120.37 110.70 9.67   1.20 N 
47 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1    B DT 15 ? ? 110.15 108.30 1.85   0.30 N 
48 1 N1    B DT 15 ? ? C2    B DT 15 ? ? N3    B DT 15 ? ? 119.98 114.60 5.38   0.60 N 
49 1 C2    B DT 15 ? ? N3    B DT 15 ? ? C4    B DT 15 ? ? 119.18 127.20 -8.02  0.60 N 
50 1 N3    B DT 15 ? ? C4    B DT 15 ? ? C5    B DT 15 ? ? 121.08 115.20 5.88   0.60 N 
51 1 C5    B DT 15 ? ? C4    B DT 15 ? ? O4    B DT 15 ? ? 120.13 124.90 -4.77  0.70 N 
52 1 "C3'" B DT 15 ? ? "O3'" B DT 15 ? ? P     B DG 16 ? ? 147.19 119.70 27.49  1.20 Y 
53 1 "O3'" B DT 15 ? ? P     B DG 16 ? ? OP2   B DG 16 ? ? 118.26 110.50 7.76   1.10 Y 
54 1 OP1   B DG 16 ? ? P     B DG 16 ? ? OP2   B DG 16 ? ? 109.36 119.60 -10.24 1.50 N 
55 1 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? 126.32 112.30 14.02  2.00 N 
56 1 "C5'" B DG 17 ? ? "C4'" B DG 17 ? ? "O4'" B DG 17 ? ? 142.05 109.80 32.25  1.10 N 
57 1 P     B DC 18 ? ? "O5'" B DC 18 ? ? "C5'" B DC 18 ? ? 110.91 120.90 -9.99  1.60 N 
58 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1    B DC 18 ? ? 110.47 108.30 2.17   0.30 N 
59 1 "C1'" B DC 20 ? ? "O4'" B DC 20 ? ? "C4'" B DC 20 ? ? 116.44 110.30 6.14   0.70 N 
60 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1    B DC 20 ? ? 120.78 108.30 12.48  0.30 N 
61 1 "C3'" B DC 20 ? ? "O3'" B DC 20 ? ? P     B DC 21 ? ? 135.62 119.70 15.92  1.20 Y 
62 1 OP1   B DC 21 ? ? P     B DC 21 ? ? OP2   B DC 21 ? ? 109.99 119.60 -9.61  1.50 N 
63 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 117.07 108.30 8.77   0.30 N 
64 1 "O4'" B DG 22 ? ? "C4'" B DG 22 ? ? "C3'" B DG 22 ? ? 101.15 104.50 -3.35  0.40 N 
65 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9    B DG 22 ? ? 110.98 108.30 2.68   0.30 N 
66 1 C5    B DG 22 ? ? C6    B DG 22 ? ? N1    B DG 22 ? ? 114.87 111.50 3.37   0.50 N 
67 1 "O5'" B DG 23 ? ? P     B DG 23 ? ? OP1   B DG 23 ? ? 121.84 110.70 11.14  1.20 N 
68 1 P     B DG 23 ? ? "O5'" B DG 23 ? ? "C5'" B DG 23 ? ? 132.35 120.90 11.45  1.60 N 
69 1 "O4'" B DT 24 ? ? "C1'" B DT 24 ? ? N1    B DT 24 ? ? 111.87 108.30 3.57   0.30 N 
70 1 C2    B DT 24 ? ? N3    B DT 24 ? ? C4    B DT 24 ? ? 122.81 127.20 -4.39  0.60 N 
71 1 N3    B DT 24 ? ? C4    B DT 24 ? ? C5    B DT 24 ? ? 118.96 115.20 3.76   0.60 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA OP3    O N N 1   
DA P      P N N 2   
DA OP1    O N N 3   
DA OP2    O N N 4   
DA "O5'"  O N N 5   
DA "C5'"  C N N 6   
DA "C4'"  C N R 7   
DA "O4'"  O N N 8   
DA "C3'"  C N S 9   
DA "O3'"  O N N 10  
DA "C2'"  C N N 11  
DA "C1'"  C N R 12  
DA N9     N Y N 13  
DA C8     C Y N 14  
DA N7     N Y N 15  
DA C5     C Y N 16  
DA C6     C Y N 17  
DA N6     N N N 18  
DA N1     N Y N 19  
DA C2     C Y N 20  
DA N3     N Y N 21  
DA C4     C Y N 22  
DA HOP3   H N N 23  
DA HOP2   H N N 24  
DA "H5'"  H N N 25  
DA "H5''" H N N 26  
DA "H4'"  H N N 27  
DA "H3'"  H N N 28  
DA "HO3'" H N N 29  
DA "H2'"  H N N 30  
DA "H2''" H N N 31  
DA "H1'"  H N N 32  
DA H8     H N N 33  
DA H61    H N N 34  
DA H62    H N N 35  
DA H2     H N N 36  
DC OP3    O N N 37  
DC P      P N N 38  
DC OP1    O N N 39  
DC OP2    O N N 40  
DC "O5'"  O N N 41  
DC "C5'"  C N N 42  
DC "C4'"  C N R 43  
DC "O4'"  O N N 44  
DC "C3'"  C N S 45  
DC "O3'"  O N N 46  
DC "C2'"  C N N 47  
DC "C1'"  C N R 48  
DC N1     N N N 49  
DC C2     C N N 50  
DC O2     O N N 51  
DC N3     N N N 52  
DC C4     C N N 53  
DC N4     N N N 54  
DC C5     C N N 55  
DC C6     C N N 56  
DC HOP3   H N N 57  
DC HOP2   H N N 58  
DC "H5'"  H N N 59  
DC "H5''" H N N 60  
DC "H4'"  H N N 61  
DC "H3'"  H N N 62  
DC "HO3'" H N N 63  
DC "H2'"  H N N 64  
DC "H2''" H N N 65  
DC "H1'"  H N N 66  
DC H41    H N N 67  
DC H42    H N N 68  
DC H5     H N N 69  
DC H6     H N N 70  
DG OP3    O N N 71  
DG P      P N N 72  
DG OP1    O N N 73  
DG OP2    O N N 74  
DG "O5'"  O N N 75  
DG "C5'"  C N N 76  
DG "C4'"  C N R 77  
DG "O4'"  O N N 78  
DG "C3'"  C N S 79  
DG "O3'"  O N N 80  
DG "C2'"  C N N 81  
DG "C1'"  C N R 82  
DG N9     N Y N 83  
DG C8     C Y N 84  
DG N7     N Y N 85  
DG C5     C Y N 86  
DG C6     C N N 87  
DG O6     O N N 88  
DG N1     N N N 89  
DG C2     C N N 90  
DG N2     N N N 91  
DG N3     N N N 92  
DG C4     C Y N 93  
DG HOP3   H N N 94  
DG HOP2   H N N 95  
DG "H5'"  H N N 96  
DG "H5''" H N N 97  
DG "H4'"  H N N 98  
DG "H3'"  H N N 99  
DG "HO3'" H N N 100 
DG "H2'"  H N N 101 
DG "H2''" H N N 102 
DG "H1'"  H N N 103 
DG H8     H N N 104 
DG H1     H N N 105 
DG H21    H N N 106 
DG H22    H N N 107 
DT OP3    O N N 108 
DT P      P N N 109 
DT OP1    O N N 110 
DT OP2    O N N 111 
DT "O5'"  O N N 112 
DT "C5'"  C N N 113 
DT "C4'"  C N R 114 
DT "O4'"  O N N 115 
DT "C3'"  C N S 116 
DT "O3'"  O N N 117 
DT "C2'"  C N N 118 
DT "C1'"  C N R 119 
DT N1     N N N 120 
DT C2     C N N 121 
DT O2     O N N 122 
DT N3     N N N 123 
DT C4     C N N 124 
DT O4     O N N 125 
DT C5     C N N 126 
DT C7     C N N 127 
DT C6     C N N 128 
DT HOP3   H N N 129 
DT HOP2   H N N 130 
DT "H5'"  H N N 131 
DT "H5''" H N N 132 
DT "H4'"  H N N 133 
DT "H3'"  H N N 134 
DT "HO3'" H N N 135 
DT "H2'"  H N N 136 
DT "H2''" H N N 137 
DT "H1'"  H N N 138 
DT H3     H N N 139 
DT H71    H N N 140 
DT H72    H N N 141 
DT H73    H N N 142 
DT H6     H N N 143 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA OP3   P      sing N N 1   
DA OP3   HOP3   sing N N 2   
DA P     OP1    doub N N 3   
DA P     OP2    sing N N 4   
DA P     "O5'"  sing N N 5   
DA OP2   HOP2   sing N N 6   
DA "O5'" "C5'"  sing N N 7   
DA "C5'" "C4'"  sing N N 8   
DA "C5'" "H5'"  sing N N 9   
DA "C5'" "H5''" sing N N 10  
DA "C4'" "O4'"  sing N N 11  
DA "C4'" "C3'"  sing N N 12  
DA "C4'" "H4'"  sing N N 13  
DA "O4'" "C1'"  sing N N 14  
DA "C3'" "O3'"  sing N N 15  
DA "C3'" "C2'"  sing N N 16  
DA "C3'" "H3'"  sing N N 17  
DA "O3'" "HO3'" sing N N 18  
DA "C2'" "C1'"  sing N N 19  
DA "C2'" "H2'"  sing N N 20  
DA "C2'" "H2''" sing N N 21  
DA "C1'" N9     sing N N 22  
DA "C1'" "H1'"  sing N N 23  
DA N9    C8     sing Y N 24  
DA N9    C4     sing Y N 25  
DA C8    N7     doub Y N 26  
DA C8    H8     sing N N 27  
DA N7    C5     sing Y N 28  
DA C5    C6     sing Y N 29  
DA C5    C4     doub Y N 30  
DA C6    N6     sing N N 31  
DA C6    N1     doub Y N 32  
DA N6    H61    sing N N 33  
DA N6    H62    sing N N 34  
DA N1    C2     sing Y N 35  
DA C2    N3     doub Y N 36  
DA C2    H2     sing N N 37  
DA N3    C4     sing Y N 38  
DC OP3   P      sing N N 39  
DC OP3   HOP3   sing N N 40  
DC P     OP1    doub N N 41  
DC P     OP2    sing N N 42  
DC P     "O5'"  sing N N 43  
DC OP2   HOP2   sing N N 44  
DC "O5'" "C5'"  sing N N 45  
DC "C5'" "C4'"  sing N N 46  
DC "C5'" "H5'"  sing N N 47  
DC "C5'" "H5''" sing N N 48  
DC "C4'" "O4'"  sing N N 49  
DC "C4'" "C3'"  sing N N 50  
DC "C4'" "H4'"  sing N N 51  
DC "O4'" "C1'"  sing N N 52  
DC "C3'" "O3'"  sing N N 53  
DC "C3'" "C2'"  sing N N 54  
DC "C3'" "H3'"  sing N N 55  
DC "O3'" "HO3'" sing N N 56  
DC "C2'" "C1'"  sing N N 57  
DC "C2'" "H2'"  sing N N 58  
DC "C2'" "H2''" sing N N 59  
DC "C1'" N1     sing N N 60  
DC "C1'" "H1'"  sing N N 61  
DC N1    C2     sing N N 62  
DC N1    C6     sing N N 63  
DC C2    O2     doub N N 64  
DC C2    N3     sing N N 65  
DC N3    C4     doub N N 66  
DC C4    N4     sing N N 67  
DC C4    C5     sing N N 68  
DC N4    H41    sing N N 69  
DC N4    H42    sing N N 70  
DC C5    C6     doub N N 71  
DC C5    H5     sing N N 72  
DC C6    H6     sing N N 73  
DG OP3   P      sing N N 74  
DG OP3   HOP3   sing N N 75  
DG P     OP1    doub N N 76  
DG P     OP2    sing N N 77  
DG P     "O5'"  sing N N 78  
DG OP2   HOP2   sing N N 79  
DG "O5'" "C5'"  sing N N 80  
DG "C5'" "C4'"  sing N N 81  
DG "C5'" "H5'"  sing N N 82  
DG "C5'" "H5''" sing N N 83  
DG "C4'" "O4'"  sing N N 84  
DG "C4'" "C3'"  sing N N 85  
DG "C4'" "H4'"  sing N N 86  
DG "O4'" "C1'"  sing N N 87  
DG "C3'" "O3'"  sing N N 88  
DG "C3'" "C2'"  sing N N 89  
DG "C3'" "H3'"  sing N N 90  
DG "O3'" "HO3'" sing N N 91  
DG "C2'" "C1'"  sing N N 92  
DG "C2'" "H2'"  sing N N 93  
DG "C2'" "H2''" sing N N 94  
DG "C1'" N9     sing N N 95  
DG "C1'" "H1'"  sing N N 96  
DG N9    C8     sing Y N 97  
DG N9    C4     sing Y N 98  
DG C8    N7     doub Y N 99  
DG C8    H8     sing N N 100 
DG N7    C5     sing Y N 101 
DG C5    C6     sing N N 102 
DG C5    C4     doub Y N 103 
DG C6    O6     doub N N 104 
DG C6    N1     sing N N 105 
DG N1    C2     sing N N 106 
DG N1    H1     sing N N 107 
DG C2    N2     sing N N 108 
DG C2    N3     doub N N 109 
DG N2    H21    sing N N 110 
DG N2    H22    sing N N 111 
DG N3    C4     sing N N 112 
DT OP3   P      sing N N 113 
DT OP3   HOP3   sing N N 114 
DT P     OP1    doub N N 115 
DT P     OP2    sing N N 116 
DT P     "O5'"  sing N N 117 
DT OP2   HOP2   sing N N 118 
DT "O5'" "C5'"  sing N N 119 
DT "C5'" "C4'"  sing N N 120 
DT "C5'" "H5'"  sing N N 121 
DT "C5'" "H5''" sing N N 122 
DT "C4'" "O4'"  sing N N 123 
DT "C4'" "C3'"  sing N N 124 
DT "C4'" "H4'"  sing N N 125 
DT "O4'" "C1'"  sing N N 126 
DT "C3'" "O3'"  sing N N 127 
DT "C3'" "C2'"  sing N N 128 
DT "C3'" "H3'"  sing N N 129 
DT "O3'" "HO3'" sing N N 130 
DT "C2'" "C1'"  sing N N 131 
DT "C2'" "H2'"  sing N N 132 
DT "C2'" "H2''" sing N N 133 
DT "C1'" N1     sing N N 134 
DT "C1'" "H1'"  sing N N 135 
DT N1    C2     sing N N 136 
DT N1    C6     sing N N 137 
DT C2    O2     doub N N 138 
DT C2    N3     sing N N 139 
DT N3    C4     sing N N 140 
DT N3    H3     sing N N 141 
DT C4    O4     doub N N 142 
DT C4    C5     sing N N 143 
DT C5    C7     sing N N 144 
DT C5    C6     doub N N 145 
DT C7    H71    sing N N 146 
DT C7    H72    sing N N 147 
DT C7    H73    sing N N 148 
DT C6    H6     sing N N 149 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1VTD 'double helix'         
1VTD 'b-form double helix'  
1VTD 'mismatched base pair' 
1VTD 'triple helix'         
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DA 1  1_555 B DG 11 1_555 0.655  1.498  -0.498 -3.336  -6.297  -16.178  1  A_DA1:DG23_B  A 1  ? B 23 ? 8  1 
1 A DC 2  1_555 B DG 10 1_555 -1.156 4.460  -1.006 -18.534 -27.855 -102.516 2  A_DC2:DG22_B  A 2  ? B 22 ? ?  ? 
1 A DG 4  1_555 B DC 9  1_555 0.654  0.646  1.065  -9.255  -19.540 21.284   3  A_DG4:DC21_B  A 4  ? B 21 ? ?  1 
1 A DG 5  1_555 B DC 8  1_555 -1.480 -0.038 0.910  -1.540  -27.184 6.864    4  A_DG5:DC20_B  A 5  ? B 20 ? ?  1 
1 A DC 6  1_555 B DG 7  1_555 -1.476 0.358  0.013  6.614   -17.665 1.276    5  A_DC6:DG19_B  A 6  ? B 19 ? ?  1 
1 A DG 7  1_555 B DC 6  1_555 0.626  0.812  1.613  0.584   -24.890 14.113   6  A_DG7:DC18_B  A 7  ? B 18 ? ?  1 
1 A DC 8  1_555 B DG 4  1_555 0.075  0.782  -1.575 -6.958  -17.476 -28.763  7  A_DC8:DG16_B  A 8  ? B 16 ? ?  ? 
1 A DC 9  1_555 B DT 3  1_555 0.789  -1.873 -0.787 -4.766  -24.836 3.174    8  A_DC9:DT15_B  A 9  ? B 15 ? 18 1 
1 A DA 10 1_555 B DG 2  1_555 0.152  1.098  -1.647 -1.937  -17.769 -12.665  9  A_DA10:DG14_B A 10 ? B 14 ? 8  1 
1 A DC 11 1_555 B DT 1  1_555 0.552  0.964  -1.111 -21.663 -15.214 -52.646  10 A_DC11:DT13_B A 11 ? B 13 ? ?  ? 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DA 1  1_555 B DG 11 1_555 A DC 2  1_555 B DG 10 1_555 0.596  -1.097 2.511 -0.675 -11.236 74.798 -0.629 -0.502 2.626 -9.200  
0.553   75.518 1 AA_DA1DC2:DG22DG23_BB   A 1  ? B 23 ? A 2  ? B 22 ? 
1 A DC 2  1_555 B DG 10 1_555 A DG 4  1_555 B DC 9  1_555 0.632  3.051  5.869 3.859  -0.086  17.073 10.123 2.191  5.850 -0.285  
-12.786 17.501 2 AA_DC2DG4:DC21DG22_BB   A 2  ? B 22 ? A 4  ? B 21 ? 
1 A DG 4  1_555 B DC 9  1_555 A DG 5  1_555 B DC 8  1_555 -1.720 0.372  2.781 -9.136 10.135  21.670 -1.982 1.343  3.116 24.121  
21.743  25.564 3 AA_DG4DG5:DC20DC21_BB   A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DG 5  1_555 B DC 8  1_555 A DC 6  1_555 B DG 7  1_555 -0.400 0.614  3.336 4.590  -10.623 37.195 2.201  1.154  2.988 -16.181 
-6.992  38.892 4 AA_DG5DC6:DG19DC20_BB   A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DC 6  1_555 B DG 7  1_555 A DG 7  1_555 B DC 6  1_555 0.973  1.453  3.937 -4.003 6.698   46.416 1.147  -1.621 4.005 8.428   
5.037   47.032 5 AA_DC6DG7:DC18DG19_BB   A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DG 7  1_555 B DC 6  1_555 A DC 8  1_555 B DG 4  1_555 -1.038 -0.116 5.328 -7.483 -3.195  49.332 0.246  0.331  5.418 -3.797  
8.896   49.957 6 AA_DG7DC8:DG16DC18_BB   A 7  ? B 18 ? A 8  ? B 16 ? 
1 A DC 8  1_555 B DG 4  1_555 A DC 9  1_555 B DT 3  1_555 1.870  0.671  3.506 1.229  -3.605  37.473 1.540  -2.726 3.486 -5.593  
-1.907  37.659 7 AA_DC8DC9:DT15DG16_BB   A 8  ? B 16 ? A 9  ? B 15 ? 
1 A DC 9  1_555 B DT 3  1_555 A DA 10 1_555 B DG 2  1_555 -1.503 0.675  3.315 0.023  2.363   35.708 0.751  2.450  3.351 3.848   
-0.038  35.784 8 AA_DC9DA10:DG14DT15_BB  A 9  ? B 15 ? A 10 ? B 14 ? 
1 A DA 10 1_555 B DG 2  1_555 A DC 11 1_555 B DT 1  1_555 -1.246 -0.894 3.736 -7.104 -6.357  31.509 -0.262 0.730  4.014 -11.384 
12.722  32.884 9 AA_DA10DC11:DT13DG14_BB A 10 ? B 14 ? A 11 ? B 13 ? 
# 
_atom_sites.entry_id                    1VTD 
_atom_sites.fract_transf_matrix[1][1]   0.015175 
_atom_sites.fract_transf_matrix[1][2]   0.008761 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.017522 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.021231 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
N 
O 
P 
# 
loop_