HEADER TRANSFERASE 25-APR-04 1VYB TITLE ENDONUCLEASE DOMAIN OF HUMAN LINE1 ORF2P COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ENDONUCLEASE DOMAIN, RESIDUES 1-238; COMPND 5 SYNONYM: LINE-1 REVERSE TRANSCRIPTASE HOMOLOG; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: NOT OFFICIALLY ASSIGNED TO EC 4.2.99.18, BUT THAT IS COMPND 8 THE CLOSEST GROUP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15-L1EN KEYWDS ENDONUCLEASE, APE-1 TYPE, RETROTRANSPOSITION, RETROTRANSPOSON, KEYWDS 2 TRANSFERASE, RNA-DIRECTED DNA POLYMERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.WEICHENRIEDER,K.REPANAS,A.PERRAKIS REVDAT 6 13-DEC-23 1VYB 1 REMARK REVDAT 5 28-FEB-18 1VYB 1 SOURCE JRNL REVDAT 4 24-FEB-09 1VYB 1 VERSN REVDAT 3 24-JUL-07 1VYB 1 REMARK REVDAT 2 29-JUL-04 1VYB 1 JRNL REVDAT 1 04-JUN-04 1VYB 0 JRNL AUTH O.WEICHENRIEDER,K.REPANAS,A.PERRAKIS JRNL TITL CRYSTAL STRUCTURE OF THE TARGETING ENDONUCLEASE OF THE HUMAN JRNL TITL 2 LINE-1 RETROTRANSPOSON. JRNL REF STRUCTURE V. 12 975 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15274918 JRNL DOI 10.1016/J.STR.2004.04.011 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 43461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2329 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2803 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 448 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.05000 REMARK 3 B22 (A**2) : -2.37000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.047 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3871 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3525 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5223 ; 1.661 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8249 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.005 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;39.509 ;23.772 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 742 ;14.074 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4143 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 731 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 717 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3560 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2305 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 270 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.291 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 85 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3067 ; 1.426 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 947 ; 0.311 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3811 ; 1.572 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1725 ; 2.815 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 3.910 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1VYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-04. REMARK 100 THE DEPOSITION ID IS D_1290015067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 685558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DEW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.52200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.23850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.52200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.23850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2123 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT ARG A 238 O HOH A 2214 2.13 REMARK 500 O HOH B 2068 O HOH B 2185 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU B 11 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP B 50 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 205 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 72 -141.27 46.69 REMARK 500 GLN A 105 37.54 71.38 REMARK 500 GLN A 106 -2.52 63.55 REMARK 500 ALA B 72 -141.47 53.45 REMARK 500 GLN B 106 -7.03 68.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 7.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO3 A1242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO3 B1243 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1243 DBREF 1VYB A 1 238 UNP Q15606 Q15606 1 238 DBREF 1VYB B 1 238 UNP Q15606 Q15606 1 238 SEQRES 1 A 238 MET THR GLY SER ASN SER HIS ILE THR ILE LEU THR LEU SEQRES 2 A 238 ASN ILE ASN GLY LEU ASN SER ALA ILE LYS ARG HIS ARG SEQRES 3 A 238 LEU ALA SER TRP ILE LYS SER GLN ASP PRO SER VAL CYS SEQRES 4 A 238 CYS ILE GLN GLU THR HIS LEU THR CYS ARG ASP THR HIS SEQRES 5 A 238 ARG LEU LYS ILE LYS GLY TRP ARG LYS ILE TYR GLN ALA SEQRES 6 A 238 ASN GLY LYS GLN LYS LYS ALA GLY VAL ALA ILE LEU VAL SEQRES 7 A 238 SER ASP LYS THR ASP PHE LYS PRO THR LYS ILE LYS ARG SEQRES 8 A 238 ASP LYS GLU GLY HIS TYR ILE MET VAL LYS GLY SER ILE SEQRES 9 A 238 GLN GLN GLU GLU LEU THR ILE LEU ASN ILE TYR ALA PRO SEQRES 10 A 238 ASN THR GLY ALA PRO ARG PHE ILE LYS GLN VAL LEU SER SEQRES 11 A 238 ASP LEU GLN ARG ASP LEU ASP SER HIS THR LEU ILE MET SEQRES 12 A 238 GLY ASP PHE ASN THR PRO LEU SER THR LEU ASP ARG SER SEQRES 13 A 238 THR ARG GLN LYS VAL ASN LYS ASP THR GLN GLU LEU ASN SEQRES 14 A 238 SER ALA LEU HIS GLN ALA ASP LEU ILE ASP ILE TYR ARG SEQRES 15 A 238 THR LEU HIS PRO LYS SER THR GLU TYR THR PHE PHE SER SEQRES 16 A 238 ALA PRO HIS HIS THR TYR SER LYS ILE ASP HIS ILE VAL SEQRES 17 A 238 GLY SER LYS ALA LEU LEU SER LYS CYS LYS ARG THR GLU SEQRES 18 A 238 ILE ILE THR ASN TYR LEU SER ASP HIS SER ALA ILE LYS SEQRES 19 A 238 LEU GLU LEU ARG SEQRES 1 B 238 MET THR GLY SER ASN SER HIS ILE THR ILE LEU THR LEU SEQRES 2 B 238 ASN ILE ASN GLY LEU ASN SER ALA ILE LYS ARG HIS ARG SEQRES 3 B 238 LEU ALA SER TRP ILE LYS SER GLN ASP PRO SER VAL CYS SEQRES 4 B 238 CYS ILE GLN GLU THR HIS LEU THR CYS ARG ASP THR HIS SEQRES 5 B 238 ARG LEU LYS ILE LYS GLY TRP ARG LYS ILE TYR GLN ALA SEQRES 6 B 238 ASN GLY LYS GLN LYS LYS ALA GLY VAL ALA ILE LEU VAL SEQRES 7 B 238 SER ASP LYS THR ASP PHE LYS PRO THR LYS ILE LYS ARG SEQRES 8 B 238 ASP LYS GLU GLY HIS TYR ILE MET VAL LYS GLY SER ILE SEQRES 9 B 238 GLN GLN GLU GLU LEU THR ILE LEU ASN ILE TYR ALA PRO SEQRES 10 B 238 ASN THR GLY ALA PRO ARG PHE ILE LYS GLN VAL LEU SER SEQRES 11 B 238 ASP LEU GLN ARG ASP LEU ASP SER HIS THR LEU ILE MET SEQRES 12 B 238 GLY ASP PHE ASN THR PRO LEU SER THR LEU ASP ARG SER SEQRES 13 B 238 THR ARG GLN LYS VAL ASN LYS ASP THR GLN GLU LEU ASN SEQRES 14 B 238 SER ALA LEU HIS GLN ALA ASP LEU ILE ASP ILE TYR ARG SEQRES 15 B 238 THR LEU HIS PRO LYS SER THR GLU TYR THR PHE PHE SER SEQRES 16 B 238 ALA PRO HIS HIS THR TYR SER LYS ILE ASP HIS ILE VAL SEQRES 17 B 238 GLY SER LYS ALA LEU LEU SER LYS CYS LYS ARG THR GLU SEQRES 18 B 238 ILE ILE THR ASN TYR LEU SER ASP HIS SER ALA ILE LYS SEQRES 19 B 238 LEU GLU LEU ARG HET SO4 A1239 5 HET SO4 A1240 5 HET SO4 A1241 5 HET SO3 A1242 4 HET GOL A1243 6 HET SO4 B1239 5 HET SO4 B1240 5 HET SO4 B1241 5 HET SO4 B1242 5 HET SO3 B1243 4 HETNAM SO4 SULFATE ION HETNAM SO3 SULFITE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 7(O4 S 2-) FORMUL 6 SO3 2(O3 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 13 HOH *448(H2 O) HELIX 1 1 SER A 20 ASP A 35 1 16 HELIX 2 2 ASP A 50 LEU A 54 5 5 HELIX 3 3 GLY A 120 LEU A 132 1 13 HELIX 4 4 SER A 151 ASP A 154 5 4 HELIX 5 5 ASN A 162 ALA A 175 1 14 HELIX 6 6 ILE A 180 HIS A 185 1 6 HELIX 7 7 ALA A 212 SER A 215 5 4 HELIX 8 8 SER B 20 ASP B 35 1 16 HELIX 9 9 ASP B 50 LEU B 54 5 5 HELIX 10 10 GLY B 120 LEU B 132 1 13 HELIX 11 11 SER B 151 ASP B 154 5 4 HELIX 12 12 ASN B 162 ALA B 175 1 14 HELIX 13 13 ILE B 180 HIS B 185 1 6 HELIX 14 14 ALA B 212 SER B 215 5 4 SHEET 1 AA 6 LYS A 61 ALA A 65 0 SHEET 2 AA 6 VAL A 74 VAL A 78 -1 O VAL A 74 N ALA A 65 SHEET 3 AA 6 VAL A 38 GLN A 42 -1 O CYS A 39 N LEU A 77 SHEET 4 AA 6 ILE A 8 ASN A 14 1 O THR A 9 N VAL A 38 SHEET 5 AA 6 ALA A 232 LEU A 237 -1 O ILE A 233 N THR A 12 SHEET 6 AA 6 CYS A 217 ILE A 223 -1 N LYS A 218 O GLU A 236 SHEET 1 AB 6 LYS A 85 ARG A 91 0 SHEET 2 AB 6 TYR A 97 ILE A 104 -1 O MET A 99 N LYS A 90 SHEET 3 AB 6 GLU A 107 TYR A 115 -1 O GLU A 107 N ILE A 104 SHEET 4 AB 6 THR A 140 ASP A 145 1 O LEU A 141 N LEU A 112 SHEET 5 AB 6 ASP A 205 SER A 210 -1 O HIS A 206 N GLY A 144 SHEET 6 AB 6 LEU A 177 ASP A 179 -1 O ILE A 178 N GLY A 209 SHEET 1 AC 2 PHE A 193 SER A 195 0 SHEET 2 AC 2 THR A 200 SER A 202 -1 O THR A 200 N SER A 195 SHEET 1 BA 6 LYS B 61 ALA B 65 0 SHEET 2 BA 6 VAL B 74 VAL B 78 -1 O VAL B 74 N ALA B 65 SHEET 3 BA 6 VAL B 38 GLN B 42 -1 O CYS B 39 N LEU B 77 SHEET 4 BA 6 ILE B 8 ASN B 14 1 O THR B 9 N VAL B 38 SHEET 5 BA 6 ALA B 232 LEU B 237 -1 O ILE B 233 N THR B 12 SHEET 6 BA 6 CYS B 217 ILE B 223 -1 N LYS B 218 O GLU B 236 SHEET 1 BB 6 PHE B 84 ARG B 91 0 SHEET 2 BB 6 TYR B 97 ILE B 104 -1 O MET B 99 N LYS B 90 SHEET 3 BB 6 GLU B 107 TYR B 115 -1 O GLU B 107 N ILE B 104 SHEET 4 BB 6 THR B 140 ASP B 145 1 O LEU B 141 N LEU B 112 SHEET 5 BB 6 ASP B 205 SER B 210 -1 O HIS B 206 N GLY B 144 SHEET 6 BB 6 LEU B 177 ASP B 179 -1 O ILE B 178 N GLY B 209 SHEET 1 BC 2 PHE B 193 SER B 195 0 SHEET 2 BC 2 THR B 200 SER B 202 -1 O THR B 200 N SER B 195 SITE 1 AC1 6 HIS A 7 ASN A 162 LYS A 163 LYS A 218 SITE 2 AC1 6 ARG A 238 HOH A2215 SITE 1 AC2 6 ILE A 62 TYR A 63 GLN A 64 ARG A 91 SITE 2 AC2 6 HOH A2216 LYS B 85 SITE 1 AC3 5 GLY A 17 LEU A 18 ASN A 19 HIS A 45 SITE 2 AC3 5 HOH A2217 SITE 1 AC4 7 LYS A 61 TYR A 63 PRO A 86 HOH A2218 SITE 2 AC4 7 HOH A2219 TYR B 63 PRO B 86 SITE 1 AC5 5 LYS A 68 LYS A 93 ALA B 21 ARG B 24 SITE 2 AC5 5 HIS B 25 SITE 1 AC6 6 GLY B 17 LEU B 18 ASN B 19 HIS B 45 SITE 2 AC6 6 HOH B2070 HOH B2220 SITE 1 AC7 6 GLN A 159 HIS B 7 LYS B 218 ARG B 238 SITE 2 AC7 6 HOH B2221 HOH B2222 SITE 1 AC8 6 GLN A 159 LYS A 218 LYS B 218 ARG B 219 SITE 2 AC8 6 HOH B2223 HOH B2224 SITE 1 AC9 8 LYS B 71 ALA B 72 HIS B 96 TYR B 115 SITE 2 AC9 8 HOH B2107 HOH B2225 HOH B2226 HOH B2227 SITE 1 BC1 10 THR A 224 ASN A 225 SER A 228 HIS A 230 SITE 2 BC1 10 SER A 231 HOH A2210 HOH A2220 HOH A2221 SITE 3 BC1 10 TYR B 191 TYR B 201 CRYST1 91.044 126.477 43.004 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010984 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023254 0.00000 MTRIX1 1 0.390000 0.028000 -0.920000 1.21795 1 MTRIX2 1 -0.024000 -0.999000 -0.040000 406.41736 1 MTRIX3 1 -0.920000 0.038000 -0.389000 2.42721 1