HEADER ELECTRON TRANSPORT 27-APR-04 1VYD TITLE CRYSTAL STRUCTURE OF CYTOCHROME C2 MUTANT G95E COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELECTRON TRANSPORT, REDOX EXPDTA X-RAY DIFFRACTION AUTHOR C.DUMORTIER,J.FITCH,F.VAN PETEGEM,W.VERMEULEN,T.E.MEYER,J.J.VAN AUTHOR 2 BEEUMEN,M.A.CUSANOVICH REVDAT 5 01-MAY-24 1VYD 1 REMARK LINK REVDAT 4 13-JUN-18 1VYD 1 TITLE REVDAT 3 20-JUN-12 1VYD 1 KEYWDS JRNL REMARK VERSN REVDAT 3 2 1 HETSYN FORMUL REVDAT 2 24-FEB-09 1VYD 1 VERSN REVDAT 1 17-JUN-04 1VYD 0 JRNL AUTH C.DUMORTIER,J.FITCH,F.VAN PETEGEM,W.VERMEULEN,T.E.MEYER, JRNL AUTH 2 J.J.VAN BEEUMEN,M.A.CUSANOVICH JRNL TITL PROTEIN DYNAMICS IN THE REGION OF THE SIXTH LIGAND JRNL TITL 2 METHIONINE REVEALED BY STUDIES OF IMIDAZOLE BINDING TO JRNL TITL 3 RHODOBACTER CAPSULATUS CYTOCHROME C2 HINGE MUTANTS. JRNL REF BIOCHEMISTRY V. 43 7717 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15196014 JRNL DOI 10.1021/BI0362370 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 12459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1736 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-04. REMARK 100 THE DEPOSITION ID IS D_1290015062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 294.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NONIUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2030 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: WILD TYPE CYTOCHROME C2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.11500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.93391 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 54.05000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.11500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.93391 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 54.05000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.11500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.93391 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.05000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.11500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.93391 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.05000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.11500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.93391 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.05000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.11500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.93391 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.05000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.86782 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 108.10000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.86782 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 108.10000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.86782 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 108.10000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.86782 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 108.10000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.86782 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 108.10000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.86782 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 108.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION GLY 116 GLU REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2004 O HOH B 2005 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 43 NH1 - CZ - NH2 ANGL. DEV. = -11.3 DEGREES REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TYR A 48 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 53 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 78 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 78 CB - CG - OD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG B 43 NE - CZ - NH2 ANGL. DEV. = -7.6 DEGREES REMARK 500 GLU B 50 OE1 - CD - OE2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP B 55 CB - CG - OD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 87.75 -166.21 REMARK 500 PHE A 98 132.53 -170.85 REMARK 500 ASP B 78 85.05 -172.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 12 17.48 REMARK 500 GLY A 46 -10.25 REMARK 500 TRP A 67 -11.65 REMARK 500 CYS B 16 11.32 REMARK 500 ASP B 55 -12.08 REMARK 500 ALA B 66 -10.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1117 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 17 NE2 REMARK 620 2 HEM A1117 NA 90.9 REMARK 620 3 HEM A1117 NB 85.4 89.6 REMARK 620 4 HEM A1117 NC 91.6 177.4 89.9 REMARK 620 5 HEM A1117 ND 90.3 90.1 175.7 90.6 REMARK 620 6 MET A 96 SD 178.9 87.9 94.4 89.5 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1117 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 17 NE2 REMARK 620 2 HEM B1117 NA 96.6 REMARK 620 3 HEM B1117 NB 93.3 89.5 REMARK 620 4 HEM B1117 NC 83.8 179.3 91.1 REMARK 620 5 HEM B1117 ND 87.2 91.8 178.5 87.5 REMARK 620 6 MET B 96 SD 175.6 86.1 90.2 93.4 89.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 1117 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C2N RELATED DB: PDB REMARK 900 CYTOCHROME C2, NMR, 20 STRUCTURES REMARK 900 RELATED ID: 1C2R RELATED DB: PDB REMARK 900 CYTOCHROME C2 DBREF 1VYD A 1 116 UNP P00094 CY2_RHOCA 22 137 DBREF 1VYD B 1 116 UNP P00094 CY2_RHOCA 22 137 SEQADV 1VYD GLU A 95 UNP P00094 GLY 116 ENGINEERED MUTATION SEQADV 1VYD GLU B 95 UNP P00094 GLY 116 ENGINEERED MUTATION SEQRES 1 A 116 GLY ASP ALA ALA LYS GLY GLU LYS GLU PHE ASN LYS CYS SEQRES 2 A 116 LYS THR CYS HIS SER ILE ILE ALA PRO ASP GLY THR GLU SEQRES 3 A 116 ILE VAL LYS GLY ALA LYS THR GLY PRO ASN LEU TYR GLY SEQRES 4 A 116 VAL VAL GLY ARG THR ALA GLY THR TYR PRO GLU PHE LYS SEQRES 5 A 116 TYR LYS ASP SER ILE VAL ALA LEU GLY ALA SER GLY PHE SEQRES 6 A 116 ALA TRP THR GLU GLU ASP ILE ALA THR TYR VAL LYS ASP SEQRES 7 A 116 PRO GLY ALA PHE LEU LYS GLU LYS LEU ASP ASP LYS LYS SEQRES 8 A 116 ALA LYS THR GLU MET ALA PHE LYS LEU ALA LYS GLY GLY SEQRES 9 A 116 GLU ASP VAL ALA ALA TYR LEU ALA SER VAL VAL LYS SEQRES 1 B 116 GLY ASP ALA ALA LYS GLY GLU LYS GLU PHE ASN LYS CYS SEQRES 2 B 116 LYS THR CYS HIS SER ILE ILE ALA PRO ASP GLY THR GLU SEQRES 3 B 116 ILE VAL LYS GLY ALA LYS THR GLY PRO ASN LEU TYR GLY SEQRES 4 B 116 VAL VAL GLY ARG THR ALA GLY THR TYR PRO GLU PHE LYS SEQRES 5 B 116 TYR LYS ASP SER ILE VAL ALA LEU GLY ALA SER GLY PHE SEQRES 6 B 116 ALA TRP THR GLU GLU ASP ILE ALA THR TYR VAL LYS ASP SEQRES 7 B 116 PRO GLY ALA PHE LEU LYS GLU LYS LEU ASP ASP LYS LYS SEQRES 8 B 116 ALA LYS THR GLU MET ALA PHE LYS LEU ALA LYS GLY GLY SEQRES 9 B 116 GLU ASP VAL ALA ALA TYR LEU ALA SER VAL VAL LYS HET HEM A1117 43 HET HEM B1117 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *82(H2 O) HELIX 1 1 ASP A 2 PHE A 10 1 9 HELIX 2 2 ASN A 11 CYS A 13 5 3 HELIX 3 3 LYS A 54 SER A 63 1 10 HELIX 4 4 THR A 68 ASP A 78 1 11 HELIX 5 5 ASP A 78 ASP A 88 1 11 HELIX 6 6 GLY A 103 VAL A 114 1 12 HELIX 7 7 ASP B 2 LYS B 14 1 13 HELIX 8 8 LYS B 54 SER B 63 1 10 HELIX 9 9 THR B 68 ASP B 78 1 11 HELIX 10 10 ASP B 78 ASP B 88 1 11 HELIX 11 11 GLY B 103 VAL B 114 1 12 SHEET 1 AA 2 ILE A 19 ILE A 20 0 SHEET 2 AA 2 GLU A 26 VAL A 28 -1 N ILE A 27 O ILE A 19 SHEET 1 BA 2 ILE B 19 ILE B 20 0 SHEET 2 BA 2 GLU B 26 VAL B 28 -1 N ILE B 27 O ILE B 19 LINK NE2 HIS A 17 FE HEM A1117 1555 1555 2.13 LINK SD MET A 96 FE HEM A1117 1555 1555 2.43 LINK NE2 HIS B 17 FE HEM B1117 1555 1555 2.17 LINK SD MET B 96 FE HEM B1117 1555 1555 2.47 SITE 1 AC1 21 LYS A 12 CYS A 13 CYS A 16 HIS A 17 SITE 2 AC1 21 LEU A 37 ARG A 43 ALA A 45 GLY A 46 SITE 3 AC1 21 TYR A 53 LYS A 54 ILE A 57 TRP A 67 SITE 4 AC1 21 TYR A 75 VAL A 76 GLU A 95 MET A 96 SITE 5 AC1 21 PHE A 98 HOH A2017 HOH A2028 HOH A2038 SITE 6 AC1 21 HOH A2039 SITE 1 AC2 17 CYS B 13 CYS B 16 HIS B 17 ARG B 43 SITE 2 AC2 17 ALA B 45 GLY B 46 TYR B 53 LYS B 54 SITE 3 AC2 17 ILE B 57 TRP B 67 TYR B 75 VAL B 76 SITE 4 AC2 17 THR B 94 GLU B 95 MET B 96 PHE B 98 SITE 5 AC2 17 HOH B2043 CRYST1 100.230 100.230 162.150 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009977 0.005760 0.000000 0.00000 SCALE2 0.000000 0.011520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006167 0.00000 MTRIX1 1 -0.263230 -0.459150 -0.848460 59.40797 1 MTRIX2 1 -0.409940 -0.742890 0.529200 98.56004 1 MTRIX3 1 -0.873300 0.487120 0.007330 0.79309 1