data_1VYO # _entry.id 1VYO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VYO pdb_00001vyo 10.2210/pdb1vyo/pdb PDBE EBI-15155 ? ? WWPDB D_1290015155 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1AVD unspecified 'AVIDIN COMPLEX WITH BIOTIN' PDB 1AVE unspecified 'AVIDIN (APO FORM)' PDB 1IJ8 unspecified 'CRYSTAL STRUCTURE OF LITE AVIDIN-BNI COMPLEX' PDB 1LDO unspecified 'AVIDIN-NORBIOITN COMPLEX' PDB 1LDQ unspecified 'AVIDIN-HOMOBIOTIN COMPLEX' PDB 1LEL unspecified 'THE AVIDIN BCAP COMPLEX' PDB 1NQN unspecified 'STRAYCTURE OF AVM-W110K (W110K MUTANT OF AVIDIN)' PDB 1RAV unspecified 'RECOMBINANT AVIDIN' PDB 2AVI unspecified 'AVIDIN COMPLEX WITH BIOTIN' PDB 2CAM unspecified 'AVIDIN MUTANT (K3E,K9E,R26D,R124L)' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VYO _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-05-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Airenne, T.T.' 1 'Johnson, M.S.' 2 'Salminen, T.A.' 3 # _citation.id primary _citation.title 'Binding Properties of Haba-Type Azo Derivatives to Avidin and Avidin-Related Protein 4.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 13 _citation.page_first 1029 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17052607 _citation.pdbx_database_id_DOI 10.1016/J.CHEMBIOL.2006.08.006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Repo, S.' 1 ? primary 'Paldanius, T.A.' 2 ? primary 'Hytonen, V.P.' 3 ? primary 'Nyholm, T.K.' 4 ? primary 'Halling, K.K.' 5 ? primary 'Huuskonen, J.' 6 ? primary 'Pentikainen, O.T.' 7 ? primary 'Rissanen, K.' 8 ? primary 'Slotte, J.P.' 9 ? primary 'Airenne, T.T.' 10 ? primary 'Salminen, T.A.' 11 ? primary 'Kulomaa, M.S.' 12 ? primary 'Johnson, M.S.' 13 ? # _cell.entry_id 1VYO _cell.length_a 72.949 _cell.length_b 78.772 _cell.length_c 43.010 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VYO _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man AVIDIN 14361.149 2 ? ? ? ? 2 non-polymer syn GLYCEROL 92.094 6 ? ? ? ? 3 water nat water 18.015 149 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYITAVTATSNEIKESPLHGTQNTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRLRTQKE ; _entity_poly.pdbx_seq_one_letter_code_can ;ARKCSLTGKWTNDLGSNMTIGAVNSRGEFTGTYITAVTATSNEIKESPLHGTQNTINKRTQPTFGFTVNWKFSESTTVFT GQCFIDRNGKEVLKTMWLLRSSVNDIGDDWKATRVGINIFTRLRTQKE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ARG n 1 3 LYS n 1 4 CYS n 1 5 SER n 1 6 LEU n 1 7 THR n 1 8 GLY n 1 9 LYS n 1 10 TRP n 1 11 THR n 1 12 ASN n 1 13 ASP n 1 14 LEU n 1 15 GLY n 1 16 SER n 1 17 ASN n 1 18 MET n 1 19 THR n 1 20 ILE n 1 21 GLY n 1 22 ALA n 1 23 VAL n 1 24 ASN n 1 25 SER n 1 26 ARG n 1 27 GLY n 1 28 GLU n 1 29 PHE n 1 30 THR n 1 31 GLY n 1 32 THR n 1 33 TYR n 1 34 ILE n 1 35 THR n 1 36 ALA n 1 37 VAL n 1 38 THR n 1 39 ALA n 1 40 THR n 1 41 SER n 1 42 ASN n 1 43 GLU n 1 44 ILE n 1 45 LYS n 1 46 GLU n 1 47 SER n 1 48 PRO n 1 49 LEU n 1 50 HIS n 1 51 GLY n 1 52 THR n 1 53 GLN n 1 54 ASN n 1 55 THR n 1 56 ILE n 1 57 ASN n 1 58 LYS n 1 59 ARG n 1 60 THR n 1 61 GLN n 1 62 PRO n 1 63 THR n 1 64 PHE n 1 65 GLY n 1 66 PHE n 1 67 THR n 1 68 VAL n 1 69 ASN n 1 70 TRP n 1 71 LYS n 1 72 PHE n 1 73 SER n 1 74 GLU n 1 75 SER n 1 76 THR n 1 77 THR n 1 78 VAL n 1 79 PHE n 1 80 THR n 1 81 GLY n 1 82 GLN n 1 83 CYS n 1 84 PHE n 1 85 ILE n 1 86 ASP n 1 87 ARG n 1 88 ASN n 1 89 GLY n 1 90 LYS n 1 91 GLU n 1 92 VAL n 1 93 LEU n 1 94 LYS n 1 95 THR n 1 96 MET n 1 97 TRP n 1 98 LEU n 1 99 LEU n 1 100 ARG n 1 101 SER n 1 102 SER n 1 103 VAL n 1 104 ASN n 1 105 ASP n 1 106 ILE n 1 107 GLY n 1 108 ASP n 1 109 ASP n 1 110 TRP n 1 111 LYS n 1 112 ALA n 1 113 THR n 1 114 ARG n 1 115 VAL n 1 116 GLY n 1 117 ILE n 1 118 ASN n 1 119 ILE n 1 120 PHE n 1 121 THR n 1 122 ARG n 1 123 LEU n 1 124 ARG n 1 125 THR n 1 126 GLN n 1 127 LYS n 1 128 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name CHICKEN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'GALLUS GALLUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9031 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AVID_CHICK _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P02701 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VYO A 1 ? 128 ? P02701 25 ? 152 ? 1 128 2 1 1VYO B 1 ? 128 ? P02701 25 ? 152 ? 1 128 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1VYO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.82 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Equal volumes (1 ul) of protein (0.5 mg/ml) in 50 mM Na acetate (pH 4) + 20 mM NaCl and well solution of 0.1 M MES (pH 6.6) + 24% PEG 8000 + 0.2 M Mg acetate ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.804 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X13' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X13 _diffrn_source.pdbx_wavelength 0.804 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1VYO _reflns.observed_criterion_sigma_I . _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.48 _reflns.number_obs 41811 _reflns.number_all ? _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.48 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs 0.47 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1VYO _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 39720 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.10 _refine.ls_d_res_high 1.48 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.167 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.165 _refine.ls_R_factor_R_free 0.190 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 2091 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.955 _refine.B_iso_mean 7.58 _refine.aniso_B[1][1] 1.13000 _refine.aniso_B[2][2] -0.35000 _refine.aniso_B[3][3] -0.77000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE PEPTIDE BONDS BETWEEN RESIDUES A41 AND A42 AND BETWEEN B41 AND B42 HAVE BEEN DETERMINED TO BE CIS- BONDS. THESE RESIDUES ARE NOT EXPECTED TO ADOPT THE CIS- CONFORMATION. THIS IS DUE TO THE POOR ELECTRON DENSITY IN THESE REGIONS OF THE ELECTRON DENSITY MAP. RESIDUES 34-46 OF BOTH CHAINS FORM LOOPS WITH TWO ALTERNATE CONFORMATIONS. BOTH ALTERNATE CONFORMATIONS CAN BE DETERMINED FOR RESIDUES 34-36 AND 42-46, BUT DUE TO POOR ELECTRON DENSITY RESIDUES 37-41 CAN BE ASSIGNED ONLY A SINGLE CONFORMATION. ; _refine.pdbx_starting_model 'PDB ENTRY 1AVD' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.067 _refine.pdbx_overall_ESU_R_Free 0.068 _refine.overall_SU_ML 0.045 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.213 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1905 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 149 _refine_hist.number_atoms_total 2090 _refine_hist.d_res_high 1.48 _refine_hist.d_res_low 19.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 2134 'X-RAY DIFFRACTION' ? r_bond_other_d 0.003 0.020 ? 1914 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.483 1.924 ? 2887 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.849 3.000 ? 4477 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.972 5.000 ? 257 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.097 0.200 ? 343 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 2290 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 427 'X-RAY DIFFRACTION' ? r_nbd_refined 0.192 0.200 ? 373 'X-RAY DIFFRACTION' ? r_nbd_other 0.257 0.200 ? 2260 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.088 0.200 ? 1330 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.149 0.200 ? 96 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.247 0.200 ? 49 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.303 0.200 ? 197 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.141 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.700 1.500 ? 1285 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.226 2.000 ? 2114 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.013 3.000 ? 849 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.246 4.500 ? 773 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.48 _refine_ls_shell.d_res_low 1.52 _refine_ls_shell.number_reflns_R_work 2878 _refine_ls_shell.R_factor_R_work 0.2540 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2860 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 152 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.239100 _struct_ncs_oper.matrix[1][2] 0.971000 _struct_ncs_oper.matrix[1][3] 0.001600 _struct_ncs_oper.matrix[2][1] 0.971000 _struct_ncs_oper.matrix[2][2] 0.239100 _struct_ncs_oper.matrix[2][3] -0.003700 _struct_ncs_oper.matrix[3][1] -0.004000 _struct_ncs_oper.matrix[3][2] 0.000700 _struct_ncs_oper.matrix[3][3] -1.000000 _struct_ncs_oper.vector[1] 0.01690 _struct_ncs_oper.vector[2] 0.07190 _struct_ncs_oper.vector[3] 14.88210 # _struct.entry_id 1VYO _struct.title 'Crystal structure of avidin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VYO _struct_keywords.pdbx_keywords GLYCOPROTEIN _struct_keywords.text 'GLYCOPROTEIN, BIOTIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 55 ? ARG A 59 ? THR A 55 ARG A 59 5 ? 5 HELX_P HELX_P2 2 ASP A 105 ? LYS A 111 ? ASP A 105 LYS A 111 5 ? 7 HELX_P HELX_P3 3 THR B 55 ? ARG B 59 ? THR B 55 ARG B 59 5 ? 5 HELX_P HELX_P4 4 ASP B 105 ? LYS B 111 ? ASP B 105 LYS B 111 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 83 SG ? ? A CYS 4 A CYS 83 1_555 ? ? ? ? ? ? ? 2.019 ? ? disulf2 disulf ? ? B CYS 4 SG ? ? ? 1_555 B CYS 83 SG ? ? B CYS 4 B CYS 83 1_555 ? ? ? ? ? ? ? 2.011 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 10 ? BA ? 10 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AA 8 9 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel BA 4 5 ? anti-parallel BA 5 6 ? anti-parallel BA 6 7 ? anti-parallel BA 7 8 ? anti-parallel BA 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 8 ? ASN A 12 ? GLY A 8 ASN A 12 AA 2 ASN A 17 ? ILE A 20 ? ASN A 17 ILE A 20 AA 3 GLU A 28 ? ILE A 34 ? GLU A 28 ILE A 34 AA 4 SER A 47 ? GLN A 53 ? SER A 47 GLN A 53 AA 5 THR A 63 ? ASN A 69 ? THR A 63 ASN A 69 AA 6 THR A 76 ? ILE A 85 ? THR A 76 ILE A 85 AA 7 GLU A 91 ? ARG A 100 ? GLU A 91 ARG A 100 AA 8 THR A 113 ? ARG A 122 ? THR A 113 ARG A 122 AA 9 GLY A 8 ? ASN A 12 ? GLY A 8 ASN A 12 AA 10 GLY A 8 ? ASN A 12 ? GLY A 8 ASN A 12 BA 1 GLY B 8 ? ASN B 12 ? GLY B 8 ASN B 12 BA 2 ASN B 17 ? ILE B 20 ? ASN B 17 ILE B 20 BA 3 GLU B 28 ? ILE B 34 ? GLU B 28 ILE B 34 BA 4 SER B 47 ? GLN B 53 ? SER B 47 GLN B 53 BA 5 THR B 63 ? VAL B 68 ? THR B 63 VAL B 68 BA 6 THR B 76 ? ILE B 85 ? THR B 76 ILE B 85 BA 7 GLU B 91 ? ARG B 100 ? GLU B 91 ARG B 100 BA 8 THR B 113 ? ARG B 122 ? THR B 113 ARG B 122 BA 9 GLY B 8 ? ASN B 12 ? GLY B 8 ASN B 12 BA 10 GLY B 8 ? ASN B 12 ? GLY B 8 ASN B 12 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TRP A 10 ? N TRP A 10 O MET A 18 ? O MET A 18 AA 2 3 N THR A 19 ? N THR A 19 O THR A 32 ? O THR A 32 AA 3 4 N TYR A 33 ? N TYR A 33 O SER A 47 ? O SER A 47 AA 4 5 N THR A 52 ? N THR A 52 O GLY A 65 ? O GLY A 65 AA 5 6 N VAL A 68 ? N VAL A 68 O THR A 77 ? O THR A 77 AA 6 7 N PHE A 84 ? N PHE A 84 O VAL A 92 ? O VAL A 92 AA 7 8 N LEU A 99 ? N LEU A 99 O ARG A 114 ? O ARG A 114 AA 8 9 N THR A 121 ? N THR A 121 O THR A 11 ? O THR A 11 BA 1 2 N TRP B 10 ? N TRP B 10 O MET B 18 ? O MET B 18 BA 2 3 N THR B 19 ? N THR B 19 O THR B 32 ? O THR B 32 BA 3 4 N TYR B 33 ? N TYR B 33 O SER B 47 ? O SER B 47 BA 4 5 N THR B 52 ? N THR B 52 O GLY B 65 ? O GLY B 65 BA 5 6 N VAL B 68 ? N VAL B 68 O THR B 77 ? O THR B 77 BA 6 7 N PHE B 84 ? N PHE B 84 O VAL B 92 ? O VAL B 92 BA 7 8 N LEU B 99 ? N LEU B 99 O ARG B 114 ? O ARG B 114 BA 8 9 N THR B 121 ? N THR B 121 O THR B 11 ? O THR B 11 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 501 ? 7 'BINDING SITE FOR RESIDUE GOL A 501' AC2 Software A GOL 502 ? 8 'BINDING SITE FOR RESIDUE GOL A 502' AC3 Software A GOL 503 ? 9 'BINDING SITE FOR RESIDUE GOL A 503' AC4 Software A GOL 504 ? 5 'BINDING SITE FOR RESIDUE GOL A 504' AC5 Software B GOL 501 ? 6 'BINDING SITE FOR RESIDUE GOL B 501' AC6 Software B GOL 502 ? 8 'BINDING SITE FOR RESIDUE GOL B 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 TRP A 70 ? TRP A 70 . ? 1_555 ? 2 AC1 7 THR A 77 ? THR A 77 . ? 1_555 ? 3 AC1 7 TRP A 97 ? TRP A 97 . ? 1_555 ? 4 AC1 7 TRP A 110 ? TRP A 110 . ? 1_555 ? 5 AC1 7 ASN A 118 ? ASN A 118 . ? 1_555 ? 6 AC1 7 GOL D . ? GOL A 502 . ? 1_555 ? 7 AC1 7 HOH I . ? HOH A 2008 . ? 1_555 ? 8 AC2 8 VAL A 37 ? VAL A 37 . ? 1_555 ? 9 AC2 8 THR A 38 ? THR A 38 . ? 1_555 ? 10 AC2 8 ALA A 39 ? ALA A 39 . ? 1_555 ? 11 AC2 8 TRP A 70 ? TRP A 70 . ? 1_555 ? 12 AC2 8 PHE A 72 ? PHE A 72 . ? 1_555 ? 13 AC2 8 SER A 73 ? SER A 73 . ? 1_555 ? 14 AC2 8 SER A 75 ? SER A 75 . ? 1_555 ? 15 AC2 8 GOL C . ? GOL A 501 . ? 1_555 ? 16 AC3 9 LEU A 14 ? LEU A 14 . ? 1_555 ? 17 AC3 9 ASP A 109 ? ASP A 109 . ? 1_555 ? 18 AC3 9 TRP A 110 ? TRP A 110 . ? 1_555 ? 19 AC3 9 GLY A 116 ? GLY A 116 . ? 1_555 ? 20 AC3 9 ILE A 117 ? ILE A 117 . ? 1_555 ? 21 AC3 9 HOH I . ? HOH A 2066 . ? 1_555 ? 22 AC3 9 HOH I . ? HOH A 2067 . ? 1_555 ? 23 AC3 9 HOH I . ? HOH A 2068 . ? 1_555 ? 24 AC3 9 LYS B 94 ? LYS B 94 . ? 1_555 ? 25 AC4 5 ALA A 22 ? ALA A 22 . ? 1_555 ? 26 AC4 5 ASN A 24 ? ASN A 24 . ? 1_555 ? 27 AC4 5 GLU A 28 ? GLU A 28 . ? 1_555 ? 28 AC4 5 THR A 30 ? THR A 30 . ? 1_555 ? 29 AC4 5 HOH J . ? HOH B 2053 . ? 1_555 ? 30 AC5 6 TRP B 70 ? TRP B 70 . ? 1_555 ? 31 AC5 6 THR B 77 ? THR B 77 . ? 1_555 ? 32 AC5 6 TRP B 97 ? TRP B 97 . ? 1_555 ? 33 AC5 6 ASN B 118 ? ASN B 118 . ? 1_555 ? 34 AC5 6 GOL H . ? GOL B 502 . ? 1_555 ? 35 AC5 6 HOH J . ? HOH B 2080 . ? 1_555 ? 36 AC6 8 VAL B 37 ? VAL B 37 . ? 1_555 ? 37 AC6 8 THR B 38 ? THR B 38 . ? 1_555 ? 38 AC6 8 ALA B 39 ? ALA B 39 . ? 1_555 ? 39 AC6 8 TRP B 70 ? TRP B 70 . ? 1_555 ? 40 AC6 8 SER B 73 ? SER B 73 . ? 1_555 ? 41 AC6 8 SER B 75 ? SER B 75 . ? 1_555 ? 42 AC6 8 LEU B 99 ? LEU B 99 . ? 1_555 ? 43 AC6 8 GOL G . ? GOL B 501 . ? 1_555 ? # _database_PDB_matrix.entry_id 1VYO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1VYO _atom_sites.fract_transf_matrix[1][1] 0.013708 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012695 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023250 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 ARG 2 2 ? ? ? A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 CYS 4 4 4 CYS CYS A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 TRP 10 10 10 TRP TRP A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 MET 18 18 18 MET MET A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 THR 60 60 60 THR THR A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 MET 96 96 96 MET MET A . n A 1 97 TRP 97 97 97 TRP TRP A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 TRP 110 110 110 TRP TRP A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ARG 124 124 ? ? ? A . n A 1 125 THR 125 125 ? ? ? A . n A 1 126 GLN 126 126 ? ? ? A . n A 1 127 LYS 127 127 ? ? ? A . n A 1 128 GLU 128 128 ? ? ? A . n B 1 1 ALA 1 1 ? ? ? B . n B 1 2 ARG 2 2 2 ARG ARG B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 CYS 4 4 4 CYS CYS B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 THR 7 7 7 THR THR B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 LYS 9 9 9 LYS LYS B . n B 1 10 TRP 10 10 10 TRP TRP B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 ASN 12 12 12 ASN ASN B . n B 1 13 ASP 13 13 13 ASP ASP B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 ASN 17 17 17 ASN ASN B . n B 1 18 MET 18 18 18 MET MET B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 GLY 21 21 21 GLY GLY B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 VAL 23 23 23 VAL VAL B . n B 1 24 ASN 24 24 24 ASN ASN B . n B 1 25 SER 25 25 25 SER SER B . n B 1 26 ARG 26 26 26 ARG ARG B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 GLU 28 28 28 GLU GLU B . n B 1 29 PHE 29 29 29 PHE PHE B . n B 1 30 THR 30 30 30 THR THR B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 TYR 33 33 33 TYR TYR B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 THR 35 35 35 THR THR B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 THR 38 38 38 THR THR B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 ASN 42 42 42 ASN ASN B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 PRO 48 48 48 PRO PRO B . n B 1 49 LEU 49 49 49 LEU LEU B . n B 1 50 HIS 50 50 50 HIS HIS B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 THR 52 52 52 THR THR B . n B 1 53 GLN 53 53 53 GLN GLN B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 THR 55 55 55 THR THR B . n B 1 56 ILE 56 56 56 ILE ILE B . n B 1 57 ASN 57 57 57 ASN ASN B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 ARG 59 59 59 ARG ARG B . n B 1 60 THR 60 60 60 THR THR B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 PRO 62 62 62 PRO PRO B . n B 1 63 THR 63 63 63 THR THR B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 GLY 65 65 65 GLY GLY B . n B 1 66 PHE 66 66 66 PHE PHE B . n B 1 67 THR 67 67 67 THR THR B . n B 1 68 VAL 68 68 68 VAL VAL B . n B 1 69 ASN 69 69 69 ASN ASN B . n B 1 70 TRP 70 70 70 TRP TRP B . n B 1 71 LYS 71 71 71 LYS LYS B . n B 1 72 PHE 72 72 72 PHE PHE B . n B 1 73 SER 73 73 73 SER SER B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 SER 75 75 75 SER SER B . n B 1 76 THR 76 76 76 THR THR B . n B 1 77 THR 77 77 77 THR THR B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 PHE 79 79 79 PHE PHE B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 GLY 81 81 81 GLY GLY B . n B 1 82 GLN 82 82 82 GLN GLN B . n B 1 83 CYS 83 83 83 CYS CYS B . n B 1 84 PHE 84 84 84 PHE PHE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 ASP 86 86 86 ASP ASP B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 GLY 89 89 89 GLY GLY B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 GLU 91 91 91 GLU GLU B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 LYS 94 94 94 LYS LYS B . n B 1 95 THR 95 95 95 THR THR B . n B 1 96 MET 96 96 96 MET MET B . n B 1 97 TRP 97 97 97 TRP TRP B . n B 1 98 LEU 98 98 98 LEU LEU B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 ARG 100 100 100 ARG ARG B . n B 1 101 SER 101 101 101 SER SER B . n B 1 102 SER 102 102 102 SER SER B . n B 1 103 VAL 103 103 103 VAL VAL B . n B 1 104 ASN 104 104 104 ASN ASN B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 GLY 107 107 107 GLY GLY B . n B 1 108 ASP 108 108 108 ASP ASP B . n B 1 109 ASP 109 109 109 ASP ASP B . n B 1 110 TRP 110 110 110 TRP TRP B . n B 1 111 LYS 111 111 111 LYS LYS B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 THR 113 113 113 THR THR B . n B 1 114 ARG 114 114 114 ARG ARG B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 GLY 116 116 116 GLY GLY B . n B 1 117 ILE 117 117 117 ILE ILE B . n B 1 118 ASN 118 118 118 ASN ASN B . n B 1 119 ILE 119 119 119 ILE ILE B . n B 1 120 PHE 120 120 120 PHE PHE B . n B 1 121 THR 121 121 121 THR THR B . n B 1 122 ARG 122 122 122 ARG ARG B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 ARG 124 124 ? ? ? B . n B 1 125 THR 125 125 ? ? ? B . n B 1 126 GLN 126 126 ? ? ? B . n B 1 127 LYS 127 127 ? ? ? B . n B 1 128 GLU 128 128 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL 1 501 501 GOL GOL A . D 2 GOL 1 502 502 GOL GOL A . E 2 GOL 1 503 503 GOL GOL A . F 2 GOL 1 504 504 GOL GOL A . G 2 GOL 1 501 501 GOL GOL B . H 2 GOL 1 502 502 GOL GOL B . I 3 HOH 1 2001 2001 HOH HOH A . I 3 HOH 2 2002 2002 HOH HOH A . I 3 HOH 3 2003 2003 HOH HOH A . I 3 HOH 4 2004 2004 HOH HOH A . I 3 HOH 5 2005 2005 HOH HOH A . I 3 HOH 6 2006 2006 HOH HOH A . I 3 HOH 7 2007 2007 HOH HOH A . I 3 HOH 8 2008 2008 HOH HOH A . I 3 HOH 9 2009 2009 HOH HOH A . I 3 HOH 10 2010 2010 HOH HOH A . I 3 HOH 11 2011 2011 HOH HOH A . I 3 HOH 12 2012 2012 HOH HOH A . I 3 HOH 13 2013 2013 HOH HOH A . I 3 HOH 14 2014 2014 HOH HOH A . I 3 HOH 15 2015 2015 HOH HOH A . I 3 HOH 16 2016 2016 HOH HOH A . I 3 HOH 17 2017 2017 HOH HOH A . I 3 HOH 18 2018 2018 HOH HOH A . I 3 HOH 19 2019 2019 HOH HOH A . I 3 HOH 20 2020 2020 HOH HOH A . I 3 HOH 21 2021 2021 HOH HOH A . I 3 HOH 22 2022 2022 HOH HOH A . I 3 HOH 23 2023 2023 HOH HOH A . I 3 HOH 24 2024 2024 HOH HOH A . I 3 HOH 25 2025 2025 HOH HOH A . I 3 HOH 26 2026 2026 HOH HOH A . I 3 HOH 27 2027 2027 HOH HOH A . I 3 HOH 28 2028 2028 HOH HOH A . I 3 HOH 29 2029 2029 HOH HOH A . I 3 HOH 30 2030 2030 HOH HOH A . I 3 HOH 31 2031 2031 HOH HOH A . I 3 HOH 32 2032 2032 HOH HOH A . I 3 HOH 33 2033 2033 HOH HOH A . I 3 HOH 34 2034 2034 HOH HOH A . I 3 HOH 35 2035 2035 HOH HOH A . I 3 HOH 36 2036 2036 HOH HOH A . I 3 HOH 37 2037 2037 HOH HOH A . I 3 HOH 38 2038 2038 HOH HOH A . I 3 HOH 39 2039 2039 HOH HOH A . I 3 HOH 40 2040 2040 HOH HOH A . I 3 HOH 41 2041 2041 HOH HOH A . I 3 HOH 42 2042 2042 HOH HOH A . I 3 HOH 43 2043 2043 HOH HOH A . I 3 HOH 44 2044 2044 HOH HOH A . I 3 HOH 45 2045 2045 HOH HOH A . I 3 HOH 46 2046 2046 HOH HOH A . I 3 HOH 47 2047 2047 HOH HOH A . I 3 HOH 48 2048 2048 HOH HOH A . I 3 HOH 49 2049 2049 HOH HOH A . I 3 HOH 50 2050 2050 HOH HOH A . I 3 HOH 51 2051 2051 HOH HOH A . I 3 HOH 52 2052 2052 HOH HOH A . I 3 HOH 53 2053 2053 HOH HOH A . I 3 HOH 54 2054 2054 HOH HOH A . I 3 HOH 55 2055 2055 HOH HOH A . I 3 HOH 56 2056 2056 HOH HOH A . I 3 HOH 57 2057 2057 HOH HOH A . I 3 HOH 58 2058 2058 HOH HOH A . I 3 HOH 59 2059 2059 HOH HOH A . I 3 HOH 60 2060 2060 HOH HOH A . I 3 HOH 61 2061 2061 HOH HOH A . I 3 HOH 62 2062 2062 HOH HOH A . I 3 HOH 63 2063 2063 HOH HOH A . I 3 HOH 64 2064 2064 HOH HOH A . I 3 HOH 65 2065 2065 HOH HOH A . I 3 HOH 66 2066 2066 HOH HOH A . I 3 HOH 67 2067 2067 HOH HOH A . I 3 HOH 68 2068 2068 HOH HOH A . I 3 HOH 69 2069 2069 HOH HOH A . J 3 HOH 1 2001 2001 HOH HOH B . J 3 HOH 2 2002 2002 HOH HOH B . J 3 HOH 3 2003 2003 HOH HOH B . J 3 HOH 4 2004 2004 HOH HOH B . J 3 HOH 5 2005 2005 HOH HOH B . J 3 HOH 6 2006 2006 HOH HOH B . J 3 HOH 7 2007 2007 HOH HOH B . J 3 HOH 8 2008 2008 HOH HOH B . J 3 HOH 9 2009 2009 HOH HOH B . J 3 HOH 10 2010 2010 HOH HOH B . J 3 HOH 11 2011 2011 HOH HOH B . J 3 HOH 12 2012 2012 HOH HOH B . J 3 HOH 13 2013 2013 HOH HOH B . J 3 HOH 14 2014 2014 HOH HOH B . J 3 HOH 15 2015 2015 HOH HOH B . J 3 HOH 16 2016 2016 HOH HOH B . J 3 HOH 17 2017 2017 HOH HOH B . J 3 HOH 18 2018 2018 HOH HOH B . J 3 HOH 19 2019 2019 HOH HOH B . J 3 HOH 20 2020 2020 HOH HOH B . J 3 HOH 21 2021 2021 HOH HOH B . J 3 HOH 22 2022 2022 HOH HOH B . J 3 HOH 23 2023 2023 HOH HOH B . J 3 HOH 24 2024 2024 HOH HOH B . J 3 HOH 25 2025 2025 HOH HOH B . J 3 HOH 26 2026 2026 HOH HOH B . J 3 HOH 27 2027 2027 HOH HOH B . J 3 HOH 28 2028 2028 HOH HOH B . J 3 HOH 29 2029 2029 HOH HOH B . J 3 HOH 30 2030 2030 HOH HOH B . J 3 HOH 31 2031 2031 HOH HOH B . J 3 HOH 32 2032 2032 HOH HOH B . J 3 HOH 33 2033 2033 HOH HOH B . J 3 HOH 34 2034 2034 HOH HOH B . J 3 HOH 35 2035 2035 HOH HOH B . J 3 HOH 36 2036 2036 HOH HOH B . J 3 HOH 37 2037 2037 HOH HOH B . J 3 HOH 38 2038 2038 HOH HOH B . J 3 HOH 39 2039 2039 HOH HOH B . J 3 HOH 40 2040 2040 HOH HOH B . J 3 HOH 41 2041 2041 HOH HOH B . J 3 HOH 42 2042 2042 HOH HOH B . J 3 HOH 43 2043 2043 HOH HOH B . J 3 HOH 44 2044 2044 HOH HOH B . J 3 HOH 45 2045 2045 HOH HOH B . J 3 HOH 46 2046 2046 HOH HOH B . J 3 HOH 47 2047 2047 HOH HOH B . J 3 HOH 48 2048 2048 HOH HOH B . J 3 HOH 49 2049 2049 HOH HOH B . J 3 HOH 50 2050 2050 HOH HOH B . J 3 HOH 51 2051 2051 HOH HOH B . J 3 HOH 52 2052 2052 HOH HOH B . J 3 HOH 53 2053 2053 HOH HOH B . J 3 HOH 54 2054 2054 HOH HOH B . J 3 HOH 55 2055 2055 HOH HOH B . J 3 HOH 56 2056 2056 HOH HOH B . J 3 HOH 57 2057 2057 HOH HOH B . J 3 HOH 58 2058 2058 HOH HOH B . J 3 HOH 59 2059 2059 HOH HOH B . J 3 HOH 60 2060 2060 HOH HOH B . J 3 HOH 61 2061 2061 HOH HOH B . J 3 HOH 62 2062 2062 HOH HOH B . J 3 HOH 63 2063 2063 HOH HOH B . J 3 HOH 64 2064 2064 HOH HOH B . J 3 HOH 65 2065 2065 HOH HOH B . J 3 HOH 66 2066 2066 HOH HOH B . J 3 HOH 67 2067 2067 HOH HOH B . J 3 HOH 68 2068 2068 HOH HOH B . J 3 HOH 69 2069 2069 HOH HOH B . J 3 HOH 70 2070 2070 HOH HOH B . J 3 HOH 71 2071 2071 HOH HOH B . J 3 HOH 72 2072 2072 HOH HOH B . J 3 HOH 73 2073 2073 HOH HOH B . J 3 HOH 74 2074 2074 HOH HOH B . J 3 HOH 75 2075 2075 HOH HOH B . J 3 HOH 76 2076 2076 HOH HOH B . J 3 HOH 77 2077 2077 HOH HOH B . J 3 HOH 78 2078 2078 HOH HOH B . J 3 HOH 79 2079 2079 HOH HOH B . J 3 HOH 80 2080 2080 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12110 ? 1 MORE -58.1 ? 1 'SSA (A^2)' 23550 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-20 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2019-10-16 6 'Structure model' 1 5 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Experimental preparation' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' exptl_crystal_grow 3 5 'Structure model' reflns_shell 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 5 'Structure model' '_exptl_crystal_grow.method' 3 5 'Structure model' '_exptl_crystal_grow.pdbx_details' 4 5 'Structure model' '_exptl_crystal_grow.temp' 5 5 'Structure model' '_reflns_shell.Rmerge_I_obs' 6 6 'Structure model' '_database_2.pdbx_DOI' 7 6 'Structure model' '_database_2.pdbx_database_accession' 8 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -3.4540 16.0290 -8.8550 0.1457 0.1811 0.1539 -0.0046 -0.0004 0.0402 2.7193 7.3288 7.9231 -1.0747 1.8585 4.2408 0.1245 0.2604 -0.1580 -0.6367 -0.0683 0.0551 -0.0939 -0.1316 -0.0562 'X-RAY DIFFRACTION' 2 ? refined 16.6310 0.3080 23.6920 0.3140 0.2734 0.2825 -0.0490 -0.0116 0.0137 2.7157 -2.3362 9.1222 -0.6074 -2.0201 -0.8251 0.0724 -0.2556 -0.1887 -0.0443 0.0822 0.3024 -0.0972 -0.2961 -0.1546 'X-RAY DIFFRACTION' 3 ? refined -7.8990 21.0980 8.3210 0.1190 0.0919 0.1117 0.0169 -0.0170 -0.0007 2.8240 2.4720 2.3247 -0.7272 -0.6585 0.1604 -0.0537 -0.1329 0.1732 0.2474 0.0376 -0.0850 -0.1689 0.0435 0.0161 'X-RAY DIFFRACTION' 4 ? refined 22.6080 -2.1560 5.7250 0.0323 0.1782 0.1465 -0.0155 -0.0218 0.0259 2.4131 3.2377 1.9020 0.0282 0.2973 -0.7874 -0.0131 0.1185 0.0345 -0.0093 -0.0988 -0.2690 -0.0877 0.2624 0.1119 'X-RAY DIFFRACTION' 5 ? refined -8.7650 13.9800 8.8010 0.0373 0.0458 0.0670 0.0177 0.0010 0.0035 1.1466 1.2939 3.2830 -0.1127 0.3049 -0.0495 -0.0388 -0.0226 0.1076 0.1080 0.0334 -0.0002 -0.3145 -0.0491 0.0054 'X-RAY DIFFRACTION' 6 ? refined 6.7480 22.8110 18.4860 0.3773 0.3438 0.3408 -0.0462 -0.0002 -0.0224 62.4165 78.8520 45.6776 48.4600 7.4959 -38.0122 -0.1495 -0.2498 -1.4287 -0.0179 -0.3422 -2.3601 0.6404 1.6184 0.4917 'X-RAY DIFFRACTION' 7 ? refined -2.8280 6.7080 2.4940 0.0027 0.0622 0.0351 0.0093 0.0086 0.0141 2.1887 4.3045 1.8954 0.9889 0.6102 1.1112 -0.0152 0.1155 0.0410 -0.0475 0.0201 -0.0694 -0.1114 0.0590 -0.0049 'X-RAY DIFFRACTION' 8 ? refined 12.2390 -2.0940 8.0760 0.0184 0.0616 0.0616 -0.0042 -0.0188 -0.0032 1.2312 1.3649 1.8257 -0.1023 -0.3327 -0.3209 -0.0169 -0.0182 0.0623 0.0994 0.0110 -0.0798 -0.0726 0.1413 0.0059 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 34 ? ? A 45 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 34 ? ? B 45 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 3 ? ? A 33 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 2 ? ? B 33 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 46 ? ? A 84 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 85 ? ? A 90 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 91 ? ? A 123 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 B 46 ? ? B 123 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.1.24 ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XDS 'data scaling' . ? 3 ? ? ? ? AMoRE phasing . ? 4 ? ? ? ? # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1VYO _pdbx_entry_details.compound_details ;FUNCTION: THE BIOLOGICAL FUNCTION OF AVIDIN IS NOT KNOWN. FORMS A STRONG NON-COVALENT SPECIFIC COMPLEX WITH BIOTIN (ONE MOLECULE OF BIOTIN PER SUBUNIT OF AVIDIN). ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 53 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2029 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 105 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 105 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 105 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 125.08 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.78 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 43 ? B 165.29 -100.42 2 1 SER B 41 ? ? -102.01 44.01 3 1 GLU B 43 ? B 93.47 -133.22 4 1 GLU B 46 ? A -35.06 130.85 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A ALA 36 ? B N A VAL 37 ? ? 4.45 2 1 C A SER 41 ? ? N A ASN 42 ? B 8.90 3 1 C B ALA 36 ? B N B VAL 37 ? ? 4.22 4 1 C B SER 41 ? ? N B ASN 42 ? B 8.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A ARG 2 ? A ARG 2 3 1 Y 1 A ARG 124 ? A ARG 124 4 1 Y 1 A THR 125 ? A THR 125 5 1 Y 1 A GLN 126 ? A GLN 126 6 1 Y 1 A LYS 127 ? A LYS 127 7 1 Y 1 A GLU 128 ? A GLU 128 8 1 Y 1 B ALA 1 ? B ALA 1 9 1 Y 1 B ARG 124 ? B ARG 124 10 1 Y 1 B THR 125 ? B THR 125 11 1 Y 1 B GLN 126 ? B GLN 126 12 1 Y 1 B LYS 127 ? B LYS 127 13 1 Y 1 B GLU 128 ? B GLU 128 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 PHE N N N N 264 PHE CA C N S 265 PHE C C N N 266 PHE O O N N 267 PHE CB C N N 268 PHE CG C Y N 269 PHE CD1 C Y N 270 PHE CD2 C Y N 271 PHE CE1 C Y N 272 PHE CE2 C Y N 273 PHE CZ C Y N 274 PHE OXT O N N 275 PHE H H N N 276 PHE H2 H N N 277 PHE HA H N N 278 PHE HB2 H N N 279 PHE HB3 H N N 280 PHE HD1 H N N 281 PHE HD2 H N N 282 PHE HE1 H N N 283 PHE HE2 H N N 284 PHE HZ H N N 285 PHE HXT H N N 286 PRO N N N N 287 PRO CA C N S 288 PRO C C N N 289 PRO O O N N 290 PRO CB C N N 291 PRO CG C N N 292 PRO CD C N N 293 PRO OXT O N N 294 PRO H H N N 295 PRO HA H N N 296 PRO HB2 H N N 297 PRO HB3 H N N 298 PRO HG2 H N N 299 PRO HG3 H N N 300 PRO HD2 H N N 301 PRO HD3 H N N 302 PRO HXT H N N 303 SER N N N N 304 SER CA C N S 305 SER C C N N 306 SER O O N N 307 SER CB C N N 308 SER OG O N N 309 SER OXT O N N 310 SER H H N N 311 SER H2 H N N 312 SER HA H N N 313 SER HB2 H N N 314 SER HB3 H N N 315 SER HG H N N 316 SER HXT H N N 317 THR N N N N 318 THR CA C N S 319 THR C C N N 320 THR O O N N 321 THR CB C N R 322 THR OG1 O N N 323 THR CG2 C N N 324 THR OXT O N N 325 THR H H N N 326 THR H2 H N N 327 THR HA H N N 328 THR HB H N N 329 THR HG1 H N N 330 THR HG21 H N N 331 THR HG22 H N N 332 THR HG23 H N N 333 THR HXT H N N 334 TRP N N N N 335 TRP CA C N S 336 TRP C C N N 337 TRP O O N N 338 TRP CB C N N 339 TRP CG C Y N 340 TRP CD1 C Y N 341 TRP CD2 C Y N 342 TRP NE1 N Y N 343 TRP CE2 C Y N 344 TRP CE3 C Y N 345 TRP CZ2 C Y N 346 TRP CZ3 C Y N 347 TRP CH2 C Y N 348 TRP OXT O N N 349 TRP H H N N 350 TRP H2 H N N 351 TRP HA H N N 352 TRP HB2 H N N 353 TRP HB3 H N N 354 TRP HD1 H N N 355 TRP HE1 H N N 356 TRP HE3 H N N 357 TRP HZ2 H N N 358 TRP HZ3 H N N 359 TRP HH2 H N N 360 TRP HXT H N N 361 TYR N N N N 362 TYR CA C N S 363 TYR C C N N 364 TYR O O N N 365 TYR CB C N N 366 TYR CG C Y N 367 TYR CD1 C Y N 368 TYR CD2 C Y N 369 TYR CE1 C Y N 370 TYR CE2 C Y N 371 TYR CZ C Y N 372 TYR OH O N N 373 TYR OXT O N N 374 TYR H H N N 375 TYR H2 H N N 376 TYR HA H N N 377 TYR HB2 H N N 378 TYR HB3 H N N 379 TYR HD1 H N N 380 TYR HD2 H N N 381 TYR HE1 H N N 382 TYR HE2 H N N 383 TYR HH H N N 384 TYR HXT H N N 385 VAL N N N N 386 VAL CA C N S 387 VAL C C N N 388 VAL O O N N 389 VAL CB C N N 390 VAL CG1 C N N 391 VAL CG2 C N N 392 VAL OXT O N N 393 VAL H H N N 394 VAL H2 H N N 395 VAL HA H N N 396 VAL HB H N N 397 VAL HG11 H N N 398 VAL HG12 H N N 399 VAL HG13 H N N 400 VAL HG21 H N N 401 VAL HG22 H N N 402 VAL HG23 H N N 403 VAL HXT H N N 404 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AVD _pdbx_initial_refinement_model.details 'PDB ENTRY 1AVD' #