data_1VZK
# 
_entry.id   1VZK 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.382 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1VZK         pdb_00001vzk 10.2210/pdb1vzk/pdb 
PDBE  EBI-15035    ?            ?                   
WWPDB D_1290015035 ?            ?                   
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          2DBE 
_pdbx_database_related.content_type   unspecified 
_pdbx_database_related.details        
;DNA (5'- D( CP GP CP GP AP AP TP TP CP GP CP GP)-3') COMPLEXED WITH BERENIL (DIMINAZENE ACETURATE) (1,3-BIS(4'-AMIDINOPHENYL)TRIAZENE)
;
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1VZK 
_pdbx_database_status.deposit_site                    PDBE 
_pdbx_database_status.process_site                    PDBE 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.recvd_initial_deposition_date   2004-05-20 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Mallena, S.'  1 
'Lee, M.P.H.'  2 
'Bailly, C.'   3 
'Neidle, S.'   4 
'Kumar, A.'    5 
'Boykin, D.W.' 6 
'Wilson, W.D.' 7 
# 
_citation.id                        primary 
_citation.title                     
;Thiophene-Based Diamidine Forms a "Super" at Binding Minor Groove Agent
;
_citation.journal_abbrev            J.Am.Chem.Soc. 
_citation.journal_volume            142 
_citation.page_first                13659 
_citation.page_last                 ? 
_citation.year                      2004 
_citation.journal_id_ASTM           JACSAT 
_citation.country                   US 
_citation.journal_id_ISSN           0002-7863 
_citation.journal_id_CSD            0004 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   15493923 
_citation.pdbx_database_id_DOI      10.1021/JA048175M 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Mallena, S.'  1 ? 
primary 'Lee, M.P.H.'  2 ? 
primary 'Bailly, C.'   3 ? 
primary 'Neidle, S.'   4 ? 
primary 'Kumar, A.'    5 ? 
primary 'Boykin, D.W.' 6 ? 
primary 'Wilson, W.D.' 7 ? 
# 
_cell.entry_id           1VZK 
_cell.length_a           25.677 
_cell.length_b           39.921 
_cell.length_c           65.185 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1VZK 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                19 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP *CP*G)-3'
;
3663.392 2  ? ? ? ? 
2 non-polymer syn '2-(5-{4-[AMINO(IMINO)METHYL]PHENYL}-2-THIENYL)-1H-BENZIMIDAZOLE-6- CARBOXIMIDAMIDE DIHYDROCHLORIDE' 360.436  1  
? ? ? ? 
3 non-polymer syn 'MAGNESIUM ION'                                                                                      24.305   1  
? ? ? ? 
4 water       nat water                                                                                                18.015   60 
? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGCGAATTCGCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DC n 
1 4  DG n 
1 5  DA n 
1 6  DA n 
1 7  DT n 
1 8  DT n 
1 9  DC n 
1 10 DG n 
1 11 DC n 
1 12 DG n 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1VZK 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_db_accession          1VZK 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1VZK A 1 ? 12 ? 1VZK 1  ? 12 ? 1  12 
2 1 1VZK B 1 ? 12 ? 1VZK 13 ? 24 ? 13 24 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
D1B non-polymer   . '2-(5-{4-[AMINO(IMINO)METHYL]PHENYL}-2-THIENYL)-1H-BENZIMIDAZOLE-6- CARBOXIMIDAMIDE DIHYDROCHLORIDE' ? 
'C19 H16 N6 S'    360.436 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"                                                                 ? 
'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"                                                                  ? 
'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"                                                                 ? 
'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"                                                                         ? 
'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                                                                                ? 'H2 O' 
18.015  
MG  non-polymer   . 'MAGNESIUM ION'                                                                                      ? 'Mg 2' 
24.305  
# 
_exptl.entry_id          1VZK 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.80 
_exptl_crystal.density_percent_sol   56.05 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          ? 
_exptl_crystal_grow.temp            ? 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.00 
_exptl_crystal_grow.pdbx_pH_range   ? 
_exptl_crystal_grow.pdbx_details    'MGCL2, DNA, COMPOUND DB818, MPD, SPERMINE, SODIUM CACODYLATE BUFFER., pH 7.00' 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           103.0 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IV' 
_diffrn_detector.pdbx_collection_date   2003-04-28 
_diffrn_detector.details                'OSMIC FOCUSSING MIRRORS' 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'NI FILTER' 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.54178 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.54178 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
_reflns.entry_id                     1VZK 
_reflns.observed_criterion_sigma_I   1.000 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             17.000 
_reflns.d_resolution_high            1.770 
_reflns.number_obs                   6667 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         95.2 
_reflns.pdbx_Rmerge_I_obs            0.04300 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        70.1800 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              6.580 
# 
_reflns_shell.pdbx_diffrn_id         1 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.d_res_high             1.77 
_reflns_shell.d_res_low              1.83 
_reflns_shell.percent_possible_all   92.5 
_reflns_shell.Rmerge_I_obs           0.13500 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    13.160 
_reflns_shell.pdbx_redundancy        ? 
# 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.entry_id                                 1VZK 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.ls_number_reflns_obs                     ? 
_refine.ls_number_reflns_all                     5894 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             8.00 
_refine.ls_d_res_high                            1.77 
_refine.ls_percent_reflns_obs                    85.8 
_refine.ls_R_factor_obs                          0.2273 
_refine.ls_R_factor_all                          0.2226 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       0.2953 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 10.1 
_refine.ls_number_reflns_R_free                  662 
_refine.ls_number_parameters                     2307 
_refine.ls_number_restraints                     2538 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_ls_cross_valid_method               'FREE R-VALUE' 
_refine.details                                  
'ANISOTROPIC SCALING APPLIED BY THE METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56' 
_refine.pdbx_starting_model                      'DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'ENGH AND HUBER' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
_refine_analyze.entry_id                        1VZK 
_refine_analyze.Luzzati_coordinate_error_obs    ? 
_refine_analyze.Luzzati_sigma_a_obs             ? 
_refine_analyze.Luzzati_d_res_low_obs           ? 
_refine_analyze.Luzzati_coordinate_error_free   ? 
_refine_analyze.Luzzati_sigma_a_free            ? 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      0 
_refine_analyze.occupancy_sum_hydrogen          0.00 
_refine_analyze.occupancy_sum_non_hydrogen      573.00 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   486 
_refine_hist.pdbx_number_atoms_ligand         27 
_refine_hist.number_atoms_solvent             60 
_refine_hist.number_atoms_total               573 
_refine_hist.d_res_high                       1.77 
_refine_hist.d_res_low                        8.00 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
s_bond_d               0.008  ? ? ? 'X-RAY DIFFRACTION' ? 
s_angle_d              0.028  ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_dist         0.000  ? ? ? 'X-RAY DIFFRACTION' ? 
s_from_restr_planes    0.0015 ? ? ? 'X-RAY DIFFRACTION' ? 
s_zero_chiral_vol      0.000  ? ? ? 'X-RAY DIFFRACTION' ? 
s_non_zero_chiral_vol  0.006  ? ? ? 'X-RAY DIFFRACTION' ? 
s_anti_bump_dis_restr  0.004  ? ? ? 'X-RAY DIFFRACTION' ? 
s_rigid_bond_adp_cmpnt 0.000  ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_adp_cmpnt    0.040  ? ? ? 'X-RAY DIFFRACTION' ? 
s_approx_iso_adps      0.000  ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.entry_id                                    1VZK 
_pdbx_refine.R_factor_all_no_cutoff                      0.2226 
_pdbx_refine.R_factor_obs_no_cutoff                      0.2273 
_pdbx_refine.free_R_factor_no_cutoff                     0.2953 
_pdbx_refine.free_R_error_no_cutoff                      ? 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     10.1 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            662 
_pdbx_refine.R_factor_all_4sig_cutoff                    0.2150 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0.2203 
_pdbx_refine.free_R_factor_4sig_cutoff                   0.2906 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   10.1 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          617 
_pdbx_refine.number_reflns_obs_4sig_cutoff               5495 
# 
_struct.entry_id                  1VZK 
_struct.title                     
;A Thiophene Based Diamidine Forms a "Super" AT Binding Minor Groove Agent
;
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1VZK 
_struct_keywords.pdbx_keywords   'NUCLEIC ACID' 
_struct_keywords.text            
'NUCLEIC ACID, NUCLEIC ACIDS, MINOR GROOVE BINDER, DOUBLE HELIX, DNA-DRUG COMPLEX, MAGNESIUM-WATER COMPLEX, DNA HYDRATION' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 3 ? 
E N N 4 ? 
F N N 4 ? 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? D MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 1014 A HOH 2009 1_555 ? ? ? ? ? ? ?            2.127 ? ? 
metalc2  metalc ? ? D MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 1014 A HOH 2011 1_555 ? ? ? ? ? ? ?            2.117 ? ? 
metalc3  metalc ? ? D MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 1014 A HOH 2015 3_655 ? ? ? ? ? ? ?            2.114 ? ? 
metalc4  metalc ? ? D MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 1014 A HOH 2016 3_655 ? ? ? ? ? ? ?            2.125 ? ? 
metalc5  metalc ? ? D MG .  MG ? ? ? 1_555 E HOH .  O  ? ? A MG 1014 A HOH 2020 3_655 ? ? ? ? ? ? ?            2.123 ? ? 
metalc6  metalc ? ? D MG .  MG ? ? ? 1_555 F HOH .  O  ? ? A MG 1014 B HOH 2019 1_555 ? ? ? ? ? ? ?            2.132 ? ? 
hydrog1  hydrog ? ? A DC 1  N3 ? ? ? 1_555 B DG  12 N1 ? ? A DC 1    B DG  24   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 1  N4 ? ? ? 1_555 B DG  12 O6 ? ? A DC 1    B DG  24   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 1  O2 ? ? ? 1_555 B DG  12 N2 ? ? A DC 1    B DG  24   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DG 2  N1 ? ? ? 1_555 B DC  11 N3 ? ? A DG 2    B DC  23   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DG 2  N2 ? ? ? 1_555 B DC  11 O2 ? ? A DG 2    B DC  23   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DG 2  O6 ? ? ? 1_555 B DC  11 N4 ? ? A DG 2    B DC  23   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DC 3  N3 ? ? ? 1_555 B DG  10 N1 ? ? A DC 3    B DG  22   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A DC 3  N4 ? ? ? 1_555 B DG  10 O6 ? ? A DC 3    B DG  22   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A DC 3  O2 ? ? ? 1_555 B DG  10 N2 ? ? A DC 3    B DG  22   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A DG 4  N1 ? ? ? 1_555 B DC  9  N3 ? ? A DG 4    B DC  21   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A DG 4  N2 ? ? ? 1_555 B DC  9  O2 ? ? A DG 4    B DC  21   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DG 4  O6 ? ? ? 1_555 B DC  9  N4 ? ? A DG 4    B DC  21   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DA 5  N1 ? ? ? 1_555 B DT  8  N3 ? ? A DA 5    B DT  20   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DA 5  N6 ? ? ? 1_555 B DT  8  O4 ? ? A DA 5    B DT  20   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DA 6  N1 ? ? ? 1_555 B DT  7  N3 ? ? A DA 6    B DT  19   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A DA 6  N6 ? ? ? 1_555 B DT  7  O4 ? ? A DA 6    B DT  19   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A DT 7  N3 ? ? ? 1_555 B DA  6  N1 ? ? A DT 7    B DA  18   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A DT 7  O4 ? ? ? 1_555 B DA  6  N6 ? ? A DT 7    B DA  18   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A DT 8  N3 ? ? ? 1_555 B DA  5  N1 ? ? A DT 8    B DA  17   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DT 8  O4 ? ? ? 1_555 B DA  5  N6 ? ? A DT 8    B DA  17   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DC 9  N3 ? ? ? 1_555 B DG  4  N1 ? ? A DC 9    B DG  16   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DC 9  N4 ? ? ? 1_555 B DG  4  O6 ? ? A DC 9    B DG  16   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A DC 9  O2 ? ? ? 1_555 B DG  4  N2 ? ? A DC 9    B DG  16   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC  3  N3 ? ? A DG 10   B DC  15   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC  3  O2 ? ? A DG 10   B DC  15   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC  3  N4 ? ? A DG 10   B DC  15   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG  2  N1 ? ? A DC 11   B DG  14   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG  2  O6 ? ? A DC 11   B DG  14   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG  2  N2 ? ? A DC 11   B DG  14   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC  1  N3 ? ? A DG 12   B DC  13   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC  1  O2 ? ? A DG 12   B DC  13   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC  1  N4 ? ? A DG 12   B DC  13   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software ? ? ? ? 6  'BINDING SITE FOR RESIDUE MG A1014'  
AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE D1B A1013' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 6  HOH E . ? HOH A 2009 . ? 1_555 ? 
2  AC1 6  HOH E . ? HOH A 2011 . ? 1_555 ? 
3  AC1 6  HOH E . ? HOH A 2015 . ? 1_555 ? 
4  AC1 6  HOH E . ? HOH A 2016 . ? 1_555 ? 
5  AC1 6  HOH E . ? HOH A 2020 . ? 1_555 ? 
6  AC1 6  HOH F . ? HOH B 2019 . ? 1_555 ? 
7  AC2 10 DA  A 6 ? DA  A 6    . ? 1_555 ? 
8  AC2 10 DT  A 7 ? DT  A 7    . ? 1_555 ? 
9  AC2 10 DT  A 8 ? DT  A 8    . ? 1_555 ? 
10 AC2 10 DC  A 9 ? DC  A 9    . ? 1_555 ? 
11 AC2 10 HOH E . ? HOH A 2034 . ? 1_555 ? 
12 AC2 10 DA  B 5 ? DA  B 17   . ? 1_555 ? 
13 AC2 10 DA  B 6 ? DA  B 18   . ? 1_555 ? 
14 AC2 10 DT  B 7 ? DT  B 19   . ? 1_555 ? 
15 AC2 10 DT  B 8 ? DT  B 20   . ? 1_555 ? 
16 AC2 10 DC  B 9 ? DC  B 21   . ? 1_555 ? 
# 
_database_PDB_matrix.entry_id          1VZK 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_atom_sites.entry_id                    1VZK 
_atom_sites.fract_transf_matrix[1][1]   0.038945 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.025049 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015341 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
MG 
N  
O  
P  
S  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC DC A . n 
A 1 2  DG 2  2  2  DG DG A . n 
A 1 3  DC 3  3  3  DC DC A . n 
A 1 4  DG 4  4  4  DG DG A . n 
A 1 5  DA 5  5  5  DA DA A . n 
A 1 6  DA 6  6  6  DA DA A . n 
A 1 7  DT 7  7  7  DT DT A . n 
A 1 8  DT 8  8  8  DT DT A . n 
A 1 9  DC 9  9  9  DC DC A . n 
A 1 10 DG 10 10 10 DG DG A . n 
A 1 11 DC 11 11 11 DC DC A . n 
A 1 12 DG 12 12 12 DG DG A . n 
B 1 1  DC 1  13 13 DC DC B . n 
B 1 2  DG 2  14 14 DG DG B . n 
B 1 3  DC 3  15 15 DC DC B . n 
B 1 4  DG 4  16 16 DG DG B . n 
B 1 5  DA 5  17 17 DA DA B . n 
B 1 6  DA 6  18 18 DA DA B . n 
B 1 7  DT 7  19 19 DT DT B . n 
B 1 8  DT 8  20 20 DT DT B . n 
B 1 9  DC 9  21 21 DC DC B . n 
B 1 10 DG 10 22 22 DG DG B . n 
B 1 11 DC 11 23 23 DC DC B . n 
B 1 12 DG 12 24 24 DG DG B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 D1B 1  1013 1013 D1B D1B A . 
D 3 MG  1  1014 1014 MG  MG  A . 
E 4 HOH 1  2001 2001 HOH HOH A . 
E 4 HOH 2  2002 2002 HOH HOH A . 
E 4 HOH 3  2003 2003 HOH HOH A . 
E 4 HOH 4  2004 2004 HOH HOH A . 
E 4 HOH 5  2005 2005 HOH HOH A . 
E 4 HOH 6  2006 2006 HOH HOH A . 
E 4 HOH 7  2007 2007 HOH HOH A . 
E 4 HOH 8  2008 2008 HOH HOH A . 
E 4 HOH 9  2009 2009 HOH HOH A . 
E 4 HOH 10 2010 2010 HOH HOH A . 
E 4 HOH 11 2011 2011 HOH HOH A . 
E 4 HOH 12 2012 2012 HOH HOH A . 
E 4 HOH 13 2013 2013 HOH HOH A . 
E 4 HOH 14 2014 2014 HOH HOH A . 
E 4 HOH 15 2015 2015 HOH HOH A . 
E 4 HOH 16 2016 2016 HOH HOH A . 
E 4 HOH 17 2017 2017 HOH HOH A . 
E 4 HOH 18 2018 2018 HOH HOH A . 
E 4 HOH 19 2019 2019 HOH HOH A . 
E 4 HOH 20 2020 2020 HOH HOH A . 
E 4 HOH 21 2021 2021 HOH HOH A . 
E 4 HOH 22 2022 2022 HOH HOH A . 
E 4 HOH 23 2023 2023 HOH HOH A . 
E 4 HOH 24 2024 2024 HOH HOH A . 
E 4 HOH 25 2025 2025 HOH HOH A . 
E 4 HOH 26 2026 2026 HOH HOH A . 
E 4 HOH 27 2027 2027 HOH HOH A . 
E 4 HOH 28 2028 2028 HOH HOH A . 
E 4 HOH 29 2029 2029 HOH HOH A . 
E 4 HOH 30 2030 2030 HOH HOH A . 
E 4 HOH 31 2031 2031 HOH HOH A . 
E 4 HOH 32 2032 2032 HOH HOH A . 
E 4 HOH 33 2033 2033 HOH HOH A . 
E 4 HOH 34 2034 2034 HOH HOH A . 
F 4 HOH 1  2001 2001 HOH HOH B . 
F 4 HOH 2  2002 2002 HOH HOH B . 
F 4 HOH 3  2003 2003 HOH HOH B . 
F 4 HOH 4  2004 2004 HOH HOH B . 
F 4 HOH 5  2005 2005 HOH HOH B . 
F 4 HOH 6  2006 2006 HOH HOH B . 
F 4 HOH 7  2007 2007 HOH HOH B . 
F 4 HOH 8  2008 2008 HOH HOH B . 
F 4 HOH 9  2009 2009 HOH HOH B . 
F 4 HOH 10 2010 2010 HOH HOH B . 
F 4 HOH 11 2011 2011 HOH HOH B . 
F 4 HOH 12 2012 2012 HOH HOH B . 
F 4 HOH 13 2013 2013 HOH HOH B . 
F 4 HOH 14 2014 2014 HOH HOH B . 
F 4 HOH 15 2015 2015 HOH HOH B . 
F 4 HOH 16 2016 2016 HOH HOH B . 
F 4 HOH 17 2017 2017 HOH HOH B . 
F 4 HOH 18 2018 2018 HOH HOH B . 
F 4 HOH 19 2019 2019 HOH HOH B . 
F 4 HOH 20 2020 2020 HOH HOH B . 
F 4 HOH 21 2021 2021 HOH HOH B . 
F 4 HOH 22 2022 2022 HOH HOH B . 
F 4 HOH 23 2023 2023 HOH HOH B . 
F 4 HOH 24 2024 2024 HOH HOH B . 
F 4 HOH 25 2025 2025 HOH HOH B . 
F 4 HOH 26 2026 2026 HOH HOH B . 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_and_software_defined_assembly 
_pdbx_struct_assembly.method_details       PQS 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  O ? E HOH . ? A HOH 2009 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2011 ? 1_555 89.7  ? 
2  O ? E HOH . ? A HOH 2009 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2015 ? 3_655 179.8 ? 
3  O ? E HOH . ? A HOH 2011 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2015 ? 3_655 90.5  ? 
4  O ? E HOH . ? A HOH 2009 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2016 ? 3_655 90.2  ? 
5  O ? E HOH . ? A HOH 2011 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2016 ? 3_655 179.8 ? 
6  O ? E HOH . ? A HOH 2015 ? 3_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2016 ? 3_655 89.6  ? 
7  O ? E HOH . ? A HOH 2009 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2020 ? 3_655 90.1  ? 
8  O ? E HOH . ? A HOH 2011 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2020 ? 3_655 89.8  ? 
9  O ? E HOH . ? A HOH 2015 ? 3_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2020 ? 3_655 89.8  ? 
10 O ? E HOH . ? A HOH 2016 ? 3_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? E HOH . ? A HOH 2020 ? 3_655 90.4  ? 
11 O ? E HOH . ? A HOH 2009 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? F HOH . ? B HOH 2019 ? 1_555 90.4  ? 
12 O ? E HOH . ? A HOH 2011 ? 1_555 MG ? D MG . ? A MG 1014 ? 1_555 O ? F HOH . ? B HOH 2019 ? 1_555 90.2  ? 
13 O ? E HOH . ? A HOH 2015 ? 3_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? F HOH . ? B HOH 2019 ? 1_555 89.8  ? 
14 O ? E HOH . ? A HOH 2016 ? 3_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? F HOH . ? B HOH 2019 ? 1_555 89.6  ? 
15 O ? E HOH . ? A HOH 2020 ? 3_655 MG ? D MG . ? A MG 1014 ? 1_555 O ? F HOH . ? B HOH 2019 ? 1_555 179.6 ? 
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2004-10-25 
2 'Structure model' 1 1 2011-05-08 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2019-05-22 
5 'Structure model' 1 4 2023-12-13 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1  2 'Structure model' 'Version format compliance' 
2  3 'Structure model' 'Version format compliance' 
3  4 'Structure model' 'Data collection'           
4  4 'Structure model' Other                       
5  4 'Structure model' 'Refinement description'    
6  5 'Structure model' 'Data collection'           
7  5 'Structure model' 'Database references'       
8  5 'Structure model' 'Derived calculations'      
9  5 'Structure model' Other                       
10 5 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1  4 'Structure model' pdbx_database_proc            
2  4 'Structure model' pdbx_database_status          
3  4 'Structure model' pdbx_seq_map_depositor_info   
4  4 'Structure model' refine                        
5  5 'Structure model' chem_comp_atom                
6  5 'Structure model' chem_comp_bond                
7  5 'Structure model' database_2                    
8  5 'Structure model' pdbx_database_status          
9  5 'Structure model' pdbx_initial_refinement_model 
10 5 'Structure model' pdbx_struct_conn_angle        
11 5 'Structure model' struct_conn                   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_pdbx_database_status.recvd_author_approval'      
2  4 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code_mod' 
3  4 'Structure model' '_refine.pdbx_ls_cross_valid_method'               
4  5 'Structure model' '_database_2.pdbx_DOI'                             
5  5 'Structure model' '_database_2.pdbx_database_accession'              
6  5 'Structure model' '_pdbx_database_status.status_code_sf'             
7  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'       
8  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'        
9  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'      
10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry'           
11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'       
12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'        
13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'      
14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry'           
15 5 'Structure model' '_pdbx_struct_conn_angle.value'                    
16 5 'Structure model' '_struct_conn.pdbx_dist_value'                     
17 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'                  
18 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'                   
19 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'                 
20 5 'Structure model' '_struct_conn.ptnr2_symmetry'                      
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
SHELXL-97 refinement       . ? 1 
DENZO     'data reduction' . ? 2 
SCALEPACK 'data scaling'   . ? 3 
CNS       phasing          . ? 4 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DC 1  ? ? "C1'" A DC 1  ? ? N1    A DC 1  ? ? 103.64 108.00 -4.36 0.70 N 
2  1 "O4'" A DA 5  ? ? "C1'" A DA 5  ? ? N9    A DA 5  ? ? 103.22 108.00 -4.78 0.70 N 
3  1 "O4'" A DA 6  ? ? "C1'" A DA 6  ? ? N9    A DA 6  ? ? 102.97 108.00 -5.03 0.70 N 
4  1 "O4'" A DT 7  ? ? "C1'" A DT 7  ? ? N1    A DT 7  ? ? 103.64 108.00 -4.36 0.70 N 
5  1 "O4'" A DT 8  ? ? "C1'" A DT 8  ? ? N1    A DT 8  ? ? 103.47 108.00 -4.53 0.70 N 
6  1 "O4'" A DC 9  ? ? "C1'" A DC 9  ? ? N1    A DC 9  ? ? 102.08 108.00 -5.92 0.70 N 
7  1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.08  102.40 -5.32 0.80 N 
8  1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1    A DC 11 ? ? 100.30 108.00 -7.70 0.70 N 
9  1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1    B DC 15 ? ? 103.74 108.00 -4.26 0.70 N 
10 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9    B DA 17 ? ? 100.46 108.00 -7.54 0.70 N 
11 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9    B DA 18 ? ? 102.25 108.00 -5.75 0.70 N 
12 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1    B DC 21 ? ? 103.17 108.00 -4.83 0.70 N 
# 
_pdbx_distant_solvent_atoms.id                                1 
_pdbx_distant_solvent_atoms.PDB_model_num                     1 
_pdbx_distant_solvent_atoms.auth_atom_id                      O 
_pdbx_distant_solvent_atoms.label_alt_id                      ? 
_pdbx_distant_solvent_atoms.auth_asym_id                      A 
_pdbx_distant_solvent_atoms.auth_comp_id                      HOH 
_pdbx_distant_solvent_atoms.auth_seq_id                       2003 
_pdbx_distant_solvent_atoms.PDB_ins_code                      ? 
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance   5.96 
_pdbx_distant_solvent_atoms.neighbor_ligand_distance          . 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
D1B C1     C  Y N 1   
D1B S2     S  Y N 2   
D1B C3     C  Y N 3   
D1B C4     C  Y N 4   
D1B C5     C  Y N 5   
D1B C6     C  Y N 6   
D1B N7     N  Y N 7   
D1B C8     C  Y N 8   
D1B C9     C  Y N 9   
D1B N10    N  Y N 10  
D1B C11    C  Y N 11  
D1B C12    C  Y N 12  
D1B C13    C  Y N 13  
D1B C14    C  Y N 14  
D1B C15    C  Y N 15  
D1B C16    C  Y N 16  
D1B C17    C  Y N 17  
D1B C18    C  Y N 18  
D1B C19    C  Y N 19  
D1B C20    C  Y N 20  
D1B C21    C  N N 21  
D1B N22    N  N N 22  
D1B N23    N  N N 23  
D1B C24    C  N N 24  
D1B N25    N  N N 25  
D1B N26    N  N N 26  
D1B H4     H  N N 27  
D1B H5     H  N N 28  
D1B H10    H  N N 29  
D1B H11    H  N N 30  
D1B H12    H  N N 31  
D1B H14    H  N N 32  
D1B H16    H  N N 33  
D1B H17    H  N N 34  
D1B H19    H  N N 35  
D1B H20    H  N N 36  
D1B H221   H  N N 37  
D1B H222   H  N N 38  
D1B H23    H  N N 39  
D1B H25    H  N N 40  
D1B H261   H  N N 41  
D1B H262   H  N N 42  
DA  OP3    O  N N 43  
DA  P      P  N N 44  
DA  OP1    O  N N 45  
DA  OP2    O  N N 46  
DA  "O5'"  O  N N 47  
DA  "C5'"  C  N N 48  
DA  "C4'"  C  N R 49  
DA  "O4'"  O  N N 50  
DA  "C3'"  C  N S 51  
DA  "O3'"  O  N N 52  
DA  "C2'"  C  N N 53  
DA  "C1'"  C  N R 54  
DA  N9     N  Y N 55  
DA  C8     C  Y N 56  
DA  N7     N  Y N 57  
DA  C5     C  Y N 58  
DA  C6     C  Y N 59  
DA  N6     N  N N 60  
DA  N1     N  Y N 61  
DA  C2     C  Y N 62  
DA  N3     N  Y N 63  
DA  C4     C  Y N 64  
DA  HOP3   H  N N 65  
DA  HOP2   H  N N 66  
DA  "H5'"  H  N N 67  
DA  "H5''" H  N N 68  
DA  "H4'"  H  N N 69  
DA  "H3'"  H  N N 70  
DA  "HO3'" H  N N 71  
DA  "H2'"  H  N N 72  
DA  "H2''" H  N N 73  
DA  "H1'"  H  N N 74  
DA  H8     H  N N 75  
DA  H61    H  N N 76  
DA  H62    H  N N 77  
DA  H2     H  N N 78  
DC  OP3    O  N N 79  
DC  P      P  N N 80  
DC  OP1    O  N N 81  
DC  OP2    O  N N 82  
DC  "O5'"  O  N N 83  
DC  "C5'"  C  N N 84  
DC  "C4'"  C  N R 85  
DC  "O4'"  O  N N 86  
DC  "C3'"  C  N S 87  
DC  "O3'"  O  N N 88  
DC  "C2'"  C  N N 89  
DC  "C1'"  C  N R 90  
DC  N1     N  N N 91  
DC  C2     C  N N 92  
DC  O2     O  N N 93  
DC  N3     N  N N 94  
DC  C4     C  N N 95  
DC  N4     N  N N 96  
DC  C5     C  N N 97  
DC  C6     C  N N 98  
DC  HOP3   H  N N 99  
DC  HOP2   H  N N 100 
DC  "H5'"  H  N N 101 
DC  "H5''" H  N N 102 
DC  "H4'"  H  N N 103 
DC  "H3'"  H  N N 104 
DC  "HO3'" H  N N 105 
DC  "H2'"  H  N N 106 
DC  "H2''" H  N N 107 
DC  "H1'"  H  N N 108 
DC  H41    H  N N 109 
DC  H42    H  N N 110 
DC  H5     H  N N 111 
DC  H6     H  N N 112 
DG  OP3    O  N N 113 
DG  P      P  N N 114 
DG  OP1    O  N N 115 
DG  OP2    O  N N 116 
DG  "O5'"  O  N N 117 
DG  "C5'"  C  N N 118 
DG  "C4'"  C  N R 119 
DG  "O4'"  O  N N 120 
DG  "C3'"  C  N S 121 
DG  "O3'"  O  N N 122 
DG  "C2'"  C  N N 123 
DG  "C1'"  C  N R 124 
DG  N9     N  Y N 125 
DG  C8     C  Y N 126 
DG  N7     N  Y N 127 
DG  C5     C  Y N 128 
DG  C6     C  N N 129 
DG  O6     O  N N 130 
DG  N1     N  N N 131 
DG  C2     C  N N 132 
DG  N2     N  N N 133 
DG  N3     N  N N 134 
DG  C4     C  Y N 135 
DG  HOP3   H  N N 136 
DG  HOP2   H  N N 137 
DG  "H5'"  H  N N 138 
DG  "H5''" H  N N 139 
DG  "H4'"  H  N N 140 
DG  "H3'"  H  N N 141 
DG  "HO3'" H  N N 142 
DG  "H2'"  H  N N 143 
DG  "H2''" H  N N 144 
DG  "H1'"  H  N N 145 
DG  H8     H  N N 146 
DG  H1     H  N N 147 
DG  H21    H  N N 148 
DG  H22    H  N N 149 
DT  OP3    O  N N 150 
DT  P      P  N N 151 
DT  OP1    O  N N 152 
DT  OP2    O  N N 153 
DT  "O5'"  O  N N 154 
DT  "C5'"  C  N N 155 
DT  "C4'"  C  N R 156 
DT  "O4'"  O  N N 157 
DT  "C3'"  C  N S 158 
DT  "O3'"  O  N N 159 
DT  "C2'"  C  N N 160 
DT  "C1'"  C  N R 161 
DT  N1     N  N N 162 
DT  C2     C  N N 163 
DT  O2     O  N N 164 
DT  N3     N  N N 165 
DT  C4     C  N N 166 
DT  O4     O  N N 167 
DT  C5     C  N N 168 
DT  C7     C  N N 169 
DT  C6     C  N N 170 
DT  HOP3   H  N N 171 
DT  HOP2   H  N N 172 
DT  "H5'"  H  N N 173 
DT  "H5''" H  N N 174 
DT  "H4'"  H  N N 175 
DT  "H3'"  H  N N 176 
DT  "HO3'" H  N N 177 
DT  "H2'"  H  N N 178 
DT  "H2''" H  N N 179 
DT  "H1'"  H  N N 180 
DT  H3     H  N N 181 
DT  H71    H  N N 182 
DT  H72    H  N N 183 
DT  H73    H  N N 184 
DT  H6     H  N N 185 
HOH O      O  N N 186 
HOH H1     H  N N 187 
HOH H2     H  N N 188 
MG  MG     MG N N 189 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D1B C1    S2     sing Y N 1   
D1B C1    C5     doub Y N 2   
D1B C1    C15    sing Y N 3   
D1B S2    C3     sing Y N 4   
D1B C3    C4     doub Y N 5   
D1B C3    C6     sing Y N 6   
D1B C4    C5     sing Y N 7   
D1B C4    H4     sing N N 8   
D1B C5    H5     sing N N 9   
D1B C6    N7     doub Y N 10  
D1B C6    N10    sing Y N 11  
D1B N7    C8     sing Y N 12  
D1B C8    C9     doub Y N 13  
D1B C8    C11    sing Y N 14  
D1B C9    N10    sing Y N 15  
D1B C9    C14    sing Y N 16  
D1B N10   H10    sing N N 17  
D1B C11   C12    doub Y N 18  
D1B C11   H11    sing N N 19  
D1B C12   C13    sing Y N 20  
D1B C12   H12    sing N N 21  
D1B C13   C14    doub Y N 22  
D1B C13   C21    sing N N 23  
D1B C14   H14    sing N N 24  
D1B C15   C16    sing Y N 25  
D1B C15   C20    doub Y N 26  
D1B C16   C17    doub Y N 27  
D1B C16   H16    sing N N 28  
D1B C17   C18    sing Y N 29  
D1B C17   H17    sing N N 30  
D1B C18   C19    doub Y N 31  
D1B C18   C24    sing N N 32  
D1B C19   C20    sing Y N 33  
D1B C19   H19    sing N N 34  
D1B C20   H20    sing N N 35  
D1B C21   N22    sing N N 36  
D1B C21   N23    doub N Z 37  
D1B N22   H221   sing N N 38  
D1B N22   H222   sing N N 39  
D1B N23   H23    sing N N 40  
D1B C24   N25    doub N N 41  
D1B C24   N26    sing N N 42  
D1B N25   H25    sing N N 43  
D1B N26   H261   sing N N 44  
D1B N26   H262   sing N N 45  
DA  OP3   P      sing N N 46  
DA  OP3   HOP3   sing N N 47  
DA  P     OP1    doub N N 48  
DA  P     OP2    sing N N 49  
DA  P     "O5'"  sing N N 50  
DA  OP2   HOP2   sing N N 51  
DA  "O5'" "C5'"  sing N N 52  
DA  "C5'" "C4'"  sing N N 53  
DA  "C5'" "H5'"  sing N N 54  
DA  "C5'" "H5''" sing N N 55  
DA  "C4'" "O4'"  sing N N 56  
DA  "C4'" "C3'"  sing N N 57  
DA  "C4'" "H4'"  sing N N 58  
DA  "O4'" "C1'"  sing N N 59  
DA  "C3'" "O3'"  sing N N 60  
DA  "C3'" "C2'"  sing N N 61  
DA  "C3'" "H3'"  sing N N 62  
DA  "O3'" "HO3'" sing N N 63  
DA  "C2'" "C1'"  sing N N 64  
DA  "C2'" "H2'"  sing N N 65  
DA  "C2'" "H2''" sing N N 66  
DA  "C1'" N9     sing N N 67  
DA  "C1'" "H1'"  sing N N 68  
DA  N9    C8     sing Y N 69  
DA  N9    C4     sing Y N 70  
DA  C8    N7     doub Y N 71  
DA  C8    H8     sing N N 72  
DA  N7    C5     sing Y N 73  
DA  C5    C6     sing Y N 74  
DA  C5    C4     doub Y N 75  
DA  C6    N6     sing N N 76  
DA  C6    N1     doub Y N 77  
DA  N6    H61    sing N N 78  
DA  N6    H62    sing N N 79  
DA  N1    C2     sing Y N 80  
DA  C2    N3     doub Y N 81  
DA  C2    H2     sing N N 82  
DA  N3    C4     sing Y N 83  
DC  OP3   P      sing N N 84  
DC  OP3   HOP3   sing N N 85  
DC  P     OP1    doub N N 86  
DC  P     OP2    sing N N 87  
DC  P     "O5'"  sing N N 88  
DC  OP2   HOP2   sing N N 89  
DC  "O5'" "C5'"  sing N N 90  
DC  "C5'" "C4'"  sing N N 91  
DC  "C5'" "H5'"  sing N N 92  
DC  "C5'" "H5''" sing N N 93  
DC  "C4'" "O4'"  sing N N 94  
DC  "C4'" "C3'"  sing N N 95  
DC  "C4'" "H4'"  sing N N 96  
DC  "O4'" "C1'"  sing N N 97  
DC  "C3'" "O3'"  sing N N 98  
DC  "C3'" "C2'"  sing N N 99  
DC  "C3'" "H3'"  sing N N 100 
DC  "O3'" "HO3'" sing N N 101 
DC  "C2'" "C1'"  sing N N 102 
DC  "C2'" "H2'"  sing N N 103 
DC  "C2'" "H2''" sing N N 104 
DC  "C1'" N1     sing N N 105 
DC  "C1'" "H1'"  sing N N 106 
DC  N1    C2     sing N N 107 
DC  N1    C6     sing N N 108 
DC  C2    O2     doub N N 109 
DC  C2    N3     sing N N 110 
DC  N3    C4     doub N N 111 
DC  C4    N4     sing N N 112 
DC  C4    C5     sing N N 113 
DC  N4    H41    sing N N 114 
DC  N4    H42    sing N N 115 
DC  C5    C6     doub N N 116 
DC  C5    H5     sing N N 117 
DC  C6    H6     sing N N 118 
DG  OP3   P      sing N N 119 
DG  OP3   HOP3   sing N N 120 
DG  P     OP1    doub N N 121 
DG  P     OP2    sing N N 122 
DG  P     "O5'"  sing N N 123 
DG  OP2   HOP2   sing N N 124 
DG  "O5'" "C5'"  sing N N 125 
DG  "C5'" "C4'"  sing N N 126 
DG  "C5'" "H5'"  sing N N 127 
DG  "C5'" "H5''" sing N N 128 
DG  "C4'" "O4'"  sing N N 129 
DG  "C4'" "C3'"  sing N N 130 
DG  "C4'" "H4'"  sing N N 131 
DG  "O4'" "C1'"  sing N N 132 
DG  "C3'" "O3'"  sing N N 133 
DG  "C3'" "C2'"  sing N N 134 
DG  "C3'" "H3'"  sing N N 135 
DG  "O3'" "HO3'" sing N N 136 
DG  "C2'" "C1'"  sing N N 137 
DG  "C2'" "H2'"  sing N N 138 
DG  "C2'" "H2''" sing N N 139 
DG  "C1'" N9     sing N N 140 
DG  "C1'" "H1'"  sing N N 141 
DG  N9    C8     sing Y N 142 
DG  N9    C4     sing Y N 143 
DG  C8    N7     doub Y N 144 
DG  C8    H8     sing N N 145 
DG  N7    C5     sing Y N 146 
DG  C5    C6     sing N N 147 
DG  C5    C4     doub Y N 148 
DG  C6    O6     doub N N 149 
DG  C6    N1     sing N N 150 
DG  N1    C2     sing N N 151 
DG  N1    H1     sing N N 152 
DG  C2    N2     sing N N 153 
DG  C2    N3     doub N N 154 
DG  N2    H21    sing N N 155 
DG  N2    H22    sing N N 156 
DG  N3    C4     sing N N 157 
DT  OP3   P      sing N N 158 
DT  OP3   HOP3   sing N N 159 
DT  P     OP1    doub N N 160 
DT  P     OP2    sing N N 161 
DT  P     "O5'"  sing N N 162 
DT  OP2   HOP2   sing N N 163 
DT  "O5'" "C5'"  sing N N 164 
DT  "C5'" "C4'"  sing N N 165 
DT  "C5'" "H5'"  sing N N 166 
DT  "C5'" "H5''" sing N N 167 
DT  "C4'" "O4'"  sing N N 168 
DT  "C4'" "C3'"  sing N N 169 
DT  "C4'" "H4'"  sing N N 170 
DT  "O4'" "C1'"  sing N N 171 
DT  "C3'" "O3'"  sing N N 172 
DT  "C3'" "C2'"  sing N N 173 
DT  "C3'" "H3'"  sing N N 174 
DT  "O3'" "HO3'" sing N N 175 
DT  "C2'" "C1'"  sing N N 176 
DT  "C2'" "H2'"  sing N N 177 
DT  "C2'" "H2''" sing N N 178 
DT  "C1'" N1     sing N N 179 
DT  "C1'" "H1'"  sing N N 180 
DT  N1    C2     sing N N 181 
DT  N1    C6     sing N N 182 
DT  C2    O2     doub N N 183 
DT  C2    N3     sing N N 184 
DT  N3    C4     sing N N 185 
DT  N3    H3     sing N N 186 
DT  C4    O4     doub N N 187 
DT  C4    C5     sing N N 188 
DT  C5    C7     sing N N 189 
DT  C5    C6     doub N N 190 
DT  C7    H71    sing N N 191 
DT  C7    H72    sing N N 192 
DT  C7    H73    sing N N 193 
DT  C6    H6     sing N N 194 
HOH O     H1     sing N N 195 
HOH O     H2     sing N N 196 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1VZK 'double helix'        
1VZK 'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 12 1_555 0.174  -0.262 0.458  3.589   -15.618 -3.449 1  A_DC1:DG24_B  A 1  ? B 24 ? 19 1 
1 A DG 2  1_555 B DC 11 1_555 -0.379 -0.193 0.571  10.550  -11.481 -1.460 2  A_DG2:DC23_B  A 2  ? B 23 ? 19 1 
1 A DC 3  1_555 B DG 10 1_555 0.085  -0.091 0.466  -7.942  -9.994  -0.172 3  A_DC3:DG22_B  A 3  ? B 22 ? 19 1 
1 A DG 4  1_555 B DC 9  1_555 -0.227 -0.175 -0.128 9.449   -9.976  2.067  4  A_DG4:DC21_B  A 4  ? B 21 ? 19 1 
1 A DA 5  1_555 B DT 8  1_555 -0.050 -0.005 -0.241 4.840   -22.499 3.668  5  A_DA5:DT20_B  A 5  ? B 20 ? 20 1 
1 A DA 6  1_555 B DT 7  1_555 0.095  -0.088 0.003  4.959   -20.321 6.280  6  A_DA6:DT19_B  A 6  ? B 19 ? 20 1 
1 A DT 7  1_555 B DA 6  1_555 -0.117 -0.020 -0.053 0.093   -19.484 7.695  7  A_DT7:DA18_B  A 7  ? B 18 ? 20 1 
1 A DT 8  1_555 B DA 5  1_555 -0.012 -0.126 -0.173 1.570   -14.335 4.115  8  A_DT8:DA17_B  A 8  ? B 17 ? 20 1 
1 A DC 9  1_555 B DG 4  1_555 0.233  -0.163 0.053  -13.775 -9.106  -1.684 9  A_DC9:DG16_B  A 9  ? B 16 ? 19 1 
1 A DG 10 1_555 B DC 3  1_555 -0.181 -0.173 0.440  8.545   -3.928  3.496  10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 
1 A DC 11 1_555 B DG 2  1_555 0.219  -0.183 0.179  3.363   -17.528 -3.287 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 
1 A DG 12 1_555 B DC 1  1_555 -0.390 0.026  0.853  6.009   -17.026 -1.742 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 12 1_555 A DG 2  1_555 B DC 11 1_555 -0.021 -0.126 3.083 -2.190 4.016   34.118 -0.801 -0.285 3.044 6.808   
3.712  34.414 1  AA_DC1DG2:DC23DG24_BB   A 1  ? B 24 ? A 2  ? B 23 ? 
1 A DG 2  1_555 B DC 11 1_555 A DC 3  1_555 B DG 10 1_555 0.642  0.331  3.831 3.745  -9.035  44.155 1.376  -0.443 3.737 -11.846 
-4.910 45.172 2  AA_DG2DC3:DG22DC23_BB   A 2  ? B 23 ? A 3  ? B 22 ? 
1 A DC 3  1_555 B DG 10 1_555 A DG 4  1_555 B DC 9  1_555 -0.367 0.619  2.945 3.762  12.163  27.128 -1.159 1.440  2.878 24.304  
-7.517 29.917 3  AA_DC3DG4:DC21DG22_BB   A 3  ? B 22 ? A 4  ? B 21 ? 
1 A DG 4  1_555 B DC 9  1_555 A DA 5  1_555 B DT 8  1_555 0.027  0.023  3.375 0.572  0.984   36.628 -0.102 0.038  3.375 1.565   
-0.911 36.645 4  AA_DG4DA5:DT20DC21_BB   A 4  ? B 21 ? A 5  ? B 20 ? 
1 A DA 5  1_555 B DT 8  1_555 A DA 6  1_555 B DT 7  1_555 0.165  -0.287 3.157 -1.149 2.532   35.566 -0.821 -0.430 3.123 4.138   
1.877  35.671 5  AA_DA5DA6:DT19DT20_BB   A 5  ? B 20 ? A 6  ? B 19 ? 
1 A DA 6  1_555 B DT 7  1_555 A DT 7  1_555 B DA 6  1_555 0.163  -0.421 3.256 1.241  1.156   31.223 -0.998 -0.070 3.242 2.146   
-2.303 31.268 6  AA_DA6DT7:DA18DT19_BB   A 6  ? B 19 ? A 7  ? B 18 ? 
1 A DT 7  1_555 B DA 6  1_555 A DT 8  1_555 B DA 5  1_555 -0.148 -0.211 3.203 1.040  0.111   35.276 -0.364 0.394  3.196 0.183   
-1.716 35.291 7  AA_DT7DT8:DA17DA18_BB   A 7  ? B 18 ? A 8  ? B 17 ? 
1 A DT 8  1_555 B DA 5  1_555 A DC 9  1_555 B DG 4  1_555 -0.172 -0.007 3.559 -0.575 -0.431  41.356 0.041  0.177  3.561 -0.611  
0.814  41.362 8  AA_DT8DC9:DG16DA17_BB   A 8  ? B 17 ? A 9  ? B 16 ? 
1 A DC 9  1_555 B DG 4  1_555 A DG 10 1_555 B DC 3  1_555 0.610  0.818  2.962 -3.788 3.810   25.897 0.867  -2.250 2.932 8.388   
8.339  26.439 9  AA_DC9DG10:DC15DG16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A DG 10 1_555 B DC 3  1_555 A DC 11 1_555 B DG 2  1_555 -1.233 0.622  3.426 -1.990 -11.059 43.133 1.877  1.439  3.231 -14.745 
2.653  44.505 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A DC 11 1_555 B DG 2  1_555 A DG 12 1_555 B DC 1  1_555 0.121  0.287  3.128 -1.147 6.594   33.754 -0.508 -0.378 3.121 11.219  
1.951  34.392 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 '2-(5-{4-[AMINO(IMINO)METHYL]PHENYL}-2-THIENYL)-1H-BENZIMIDAZOLE-6- CARBOXIMIDAMIDE DIHYDROCHLORIDE' D1B 
3 'MAGNESIUM ION'                                                                                      MG  
4 water                                                                                                HOH 
# 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.accession_code   2DBE 
_pdbx_initial_refinement_model.details          'DNA PART OF NDB ENTRY GDL009 OR PDB ENTRY 2DBE' 
#