HEADER OXIDOREDUCTASE 01-JUN-04 1W03 TITLE ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL-GLYCINE-FE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS, ISOPENICILLIN N SYNTHASE; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_COMMON: ASPERGILLUS NIDULANS; SOURCE 5 ORGANISM_TAXID: 227321; SOURCE 6 GENE: PCB C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJB703; OTHER_DETAILS: KEYWDS OXIDOREDUCTASE, B-LACTAM ANTIBIOTIC, OXYGENASE, PENICILLIN KEYWDS 2 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.J.LONG,I.J.CLIFTON,P.J.RUTLEDGE REVDAT 5 08-MAY-24 1W03 1 SOURCE REVDAT 4 13-DEC-23 1W03 1 LINK REVDAT 3 13-JUL-11 1W03 1 VERSN REVDAT 2 24-FEB-09 1W03 1 VERSN REVDAT 1 04-MAY-05 1W03 0 JRNL AUTH A.J.LONG,I.J.CLIFTON,P.L.ROACH,J.E.BALDWIN,C.J.SCHOFIELD, JRNL AUTH 2 P.J.RUTLEDGE JRNL TITL STRUCTURAL STUDIES ON THE REACTION OF ISOPENICILLIN N JRNL TITL 2 SYNTHASE WITH THE TRUNCATED SUBSTRATE ANALOGUES JRNL TITL 3 DELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-GLYCINE AND JRNL TITL 4 DELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D- ALANINE JRNL REF BIOCHEMISTRY V. 44 6619 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15850395 JRNL DOI 10.1021/BI047478Q REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.200 REMARK 3 FREE R VALUE TEST SET COUNT : 836 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 1.30000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2739 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2335 ; 0.015 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3727 ; 1.872 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5463 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3086 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 564 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 572 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2718 ; 0.265 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1414 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 184 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.299 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1646 ; 0.620 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2657 ; 0.973 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 1.812 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1070 ; 2.548 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5680 30.5790 -12.8210 REMARK 3 T TENSOR REMARK 3 T11: 0.0275 T22: 0.0787 REMARK 3 T33: 0.0565 T12: 0.0033 REMARK 3 T13: -0.0223 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.5967 L22: 1.1651 REMARK 3 L33: 1.9320 L12: 0.4150 REMARK 3 L13: 0.0368 L23: -0.8055 REMARK 3 S TENSOR REMARK 3 S11: -0.0594 S12: 0.0755 S13: -0.0049 REMARK 3 S21: -0.1301 S22: 0.0409 S23: 0.0793 REMARK 3 S31: 0.0458 S32: -0.1107 S33: 0.0185 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6230 30.9080 15.6010 REMARK 3 T TENSOR REMARK 3 T11: 0.0523 T22: 0.0634 REMARK 3 T33: 0.0432 T12: 0.0040 REMARK 3 T13: -0.0188 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.7076 L22: 0.8605 REMARK 3 L33: 2.0774 L12: -0.5723 REMARK 3 L13: -0.4599 L23: 0.3767 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.1272 S13: -0.0016 REMARK 3 S21: 0.0956 S22: 0.0241 S23: -0.0227 REMARK 3 S31: 0.0538 S32: 0.0212 S33: -0.0293 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8690 27.0670 0.3110 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.0741 REMARK 3 T33: 0.0601 T12: 0.0126 REMARK 3 T13: 0.0151 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.6167 L22: 0.9120 REMARK 3 L33: 0.8430 L12: 0.0293 REMARK 3 L13: 0.3898 L23: -0.3477 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.0091 S13: -0.0399 REMARK 3 S21: 0.0309 S22: -0.0294 S23: -0.0428 REMARK 3 S31: 0.0567 S32: 0.0637 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6960 37.9350 3.0660 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0630 REMARK 3 T33: 0.0364 T12: -0.0102 REMARK 3 T13: -0.0317 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.7385 L22: 0.9380 REMARK 3 L33: 0.4662 L12: -0.0611 REMARK 3 L13: 0.0161 L23: -0.2095 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.0190 S13: 0.0846 REMARK 3 S21: 0.0394 S22: -0.0263 S23: 0.0036 REMARK 3 S31: -0.0786 S32: -0.0181 S33: -0.0049 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2630 40.3220 -3.7570 REMARK 3 T TENSOR REMARK 3 T11: 0.0647 T22: 0.0822 REMARK 3 T33: 0.0729 T12: 0.0160 REMARK 3 T13: -0.0197 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4695 L22: 0.6167 REMARK 3 L33: 1.0433 L12: -0.5634 REMARK 3 L13: -0.3113 L23: 0.5001 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.1309 S13: 0.0798 REMARK 3 S21: -0.0954 S22: -0.0610 S23: 0.1435 REMARK 3 S31: -0.0638 S32: -0.1475 S33: 0.0164 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 278 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0310 42.8200 -3.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.0663 REMARK 3 T33: 0.0840 T12: 0.0042 REMARK 3 T13: -0.0232 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.7641 L22: 1.0030 REMARK 3 L33: 1.7991 L12: 0.2446 REMARK 3 L13: -0.5855 L23: -0.1721 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: 0.0434 S13: 0.1303 REMARK 3 S21: -0.0484 S22: -0.0028 S23: -0.1005 REMARK 3 S31: -0.3004 S32: 0.1391 S33: -0.0421 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1332 A 1332 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5100 38.4580 5.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.2172 REMARK 3 T33: 0.2233 T12: -0.0212 REMARK 3 T13: -0.0095 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: -2.4238 L22: 6.7891 REMARK 3 L33: 7.8764 L12: -5.5753 REMARK 3 L13: 1.6426 L23: -3.0432 REMARK 3 S TENSOR REMARK 3 S11: 0.1468 S12: -0.1125 S13: 0.2177 REMARK 3 S21: -0.2714 S22: -0.0733 S23: -0.0627 REMARK 3 S31: 0.5586 S32: -0.3603 S33: -0.0735 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 1-2 DISORDERED REMARK 4 REMARK 4 1W03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1290015106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200BH REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20133 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.360 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1BK0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M LITHIUM SULPHATE, 76MM TRIS/HCL REMARK 280 (PH8.5), PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.38500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.48500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.48500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 237 CB REMARK 470 LYS A 305 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 3 N SER A 3 CA 0.175 REMARK 500 SER A 3 CB SER A 3 OG 0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 179 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 245 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP A 307 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -115.52 -93.75 REMARK 500 HIS A 82 61.19 -105.67 REMARK 500 LYS A 97 -39.59 -136.45 REMARK 500 ASN A 107 116.29 -38.10 REMARK 500 THR A 123 -7.50 77.08 REMARK 500 ASP A 179 -0.63 -142.32 REMARK 500 ASN A 230 -31.88 -150.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1333 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 89.1 REMARK 620 3 HIS A 270 NE2 83.5 82.5 REMARK 620 4 HCG A1332 S17 94.2 89.5 171.8 REMARK 620 5 HOH A2188 O 175.6 91.4 92.2 90.2 REMARK 620 6 HOH A2266 O 96.3 174.6 97.4 90.7 83.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HCG A1332 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BK0 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACV-FE COMPLEX) REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACV-FE-NO REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1HB1 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ANAEROBIC ACOV REMARK 900 FE COMPLEX) REMARK 900 RELATED ID: 1HB2 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1HB3 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1HB4 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1IPS RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (MANGANESE REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1OBN RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -AMINOBUTYRATE-FE- REMARK 900 NO COMPLEX REMARK 900 RELATED ID: 1OC1 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -AMINOBUTYRATE-FE REMARK 900 COMPLEX REMARK 900 RELATED ID: 1ODM RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ANAEROBIC AC- REMARK 900 VINYLGLYCINE FE COMPLEX) REMARK 900 RELATED ID: 1ODN RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN-EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC AC-VINYLGLYCINE FE COMPLEX) REMARK 900 RELATED ID: 1QIQ RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACMC FE COMPLEX) REMARK 900 RELATED ID: 1QJE RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (IPN - FE REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1QJF RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (MONOCYCLIC REMARK 900 SULFOXIDE - FE COMPLEX) REMARK 900 RELATED ID: 1UZW RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH L-D-(A- AMINOADIPOYL)-L-CYSTEINYL-D- REMARK 900 ISODEHYDROVALINE REMARK 900 RELATED ID: 1W04 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -GLYCINE-FE-NO REMARK 900 COMPLEX REMARK 900 RELATED ID: 1W05 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -ALANINE-FE COMPLEX REMARK 900 RELATED ID: 1W06 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -ALANINE-FE NO REMARK 900 COMPLEX DBREF 1W03 A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET HCG A1332 21 HET FE2 A1333 1 HET SO4 A1334 5 HETNAM HCG DELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-GLYCINE HETNAM FE2 FE (II) ION HETNAM SO4 SULFATE ION FORMUL 2 HCG C11 H19 N3 O6 S FORMUL 3 FE2 FE 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *272(H2 O) HELIX 1 1 SER A 15 GLY A 19 5 5 HELIX 2 2 ASP A 21 ASP A 38 1 18 HELIX 3 3 ASN A 50 ILE A 65 1 16 HELIX 4 4 THR A 66 ALA A 74 1 9 HELIX 5 5 HIS A 114 ALA A 119 1 6 HELIX 6 6 GLY A 137 LEU A 164 1 28 HELIX 7 7 PHE A 171 PHE A 175 5 5 HELIX 8 8 PRO A 196 ILE A 200 5 5 HELIX 9 9 GLY A 254 THR A 261 1 8 HELIX 10 10 SER A 312 GLY A 329 1 18 SHEET 1 AA 8 LYS A 11 ASP A 13 0 SHEET 2 AA 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA 8 ILE A 220 GLN A 225 -1 O THR A 221 N ASN A 252 SHEET 5 AA 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA 8 SER A 183 TYR A 189 -1 O SER A 183 N PHE A 285 SHEET 7 AA 8 GLU A 101 LEU A 106 -1 O GLU A 101 N ARG A 188 SHEET 8 AA 8 GLY A 89 TYR A 91 -1 O GLY A 89 N CYS A 104 SHEET 1 AB 5 LYS A 201 THR A 202 0 SHEET 2 AB 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AB 5 HIS A 270 LYS A 273 -1 O HIS A 270 N HIS A 214 SHEET 4 AB 5 LEU A 231 THR A 235 -1 O GLN A 232 N ARG A 271 SHEET 5 AB 5 GLY A 238 ASP A 241 -1 O GLY A 238 N THR A 235 LINK NE2 HIS A 214 FE FE2 A1333 1555 1555 2.27 LINK OD1 ASP A 216 FE FE2 A1333 1555 1555 2.16 LINK NE2 HIS A 270 FE FE2 A1333 1555 1555 2.33 LINK S17 HCG A1332 FE FE2 A1333 1555 1555 2.50 LINK FE FE2 A1333 O HOH A2188 1555 1555 2.32 LINK FE FE2 A1333 O HOH A2266 1555 1555 2.28 CISPEP 1 ASP A 193 PRO A 194 0 1.42 SITE 1 AC1 6 HIS A 214 ASP A 216 HIS A 270 HCG A1332 SITE 2 AC1 6 HOH A2188 HOH A2266 SITE 1 AC2 7 ARG A 53 ASP A 140 PHE A 141 HOH A2126 SITE 2 AC2 7 HOH A2132 HOH A2270 HOH A2271 SITE 1 AC3 18 ARG A 87 TYR A 91 CYS A 104 SER A 183 SITE 2 AC3 18 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC3 18 VAL A 272 PHE A 285 FE2 A1333 HOH A2235 SITE 4 AC3 18 HOH A2264 HOH A2265 HOH A2266 HOH A2267 SITE 5 AC3 18 HOH A2268 HOH A2269 CRYST1 46.770 71.200 100.970 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021381 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009904 0.00000