HEADER OXIDOREDUCTASE 23-JUN-04 1W1Q TITLE PLANT CYTOKININ DEHYDROGENASE IN COMPLEX WITH ISOPENTENYLADENINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOKININ DEHYDROGENASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOKININ OXIDASE 1, CKO 1; COMPND 5 EC: 1.5.99.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS FLAVIN, CYTOKININ, OXIDOREDUCTASE, FLAVOPROTEIN, FAD EXPDTA X-RAY DIFFRACTION AUTHOR E.MALITO,A.MATTEVI REVDAT 3 29-JUL-20 1W1Q 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 24-FEB-09 1W1Q 1 VERSN REVDAT 1 26-AUG-04 1W1Q 0 JRNL AUTH E.MALITO,A.CODA,K.BILYEU,M.W.FRAAIJE,A.MATTEVI JRNL TITL STRUCTURES OF MICHAELIS AND PRODUCT COMPLEXES OF PLANT JRNL TITL 2 CYTOKININ DEHYDROGENASE: IMPLICATIONS FOR FLAVOENZYME JRNL TITL 3 CATALYSIS JRNL REF J.MOL.BIOL. V. 341 1237 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15321719 JRNL DOI 10.1016/J.JMB.2004.06.083 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 70748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5015 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 312 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3671 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.255 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3904 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5322 ; 1.126 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.621 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2974 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1825 ; 0.187 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 273 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2371 ; 0.443 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3782 ; 0.852 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1533 ; 1.350 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1540 ; 2.251 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1W1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1290020220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 85.67800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 85.67800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.08750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 85.67800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 85.67800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.08750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 85.67800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.67800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.08750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 85.67800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.67800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.08750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2281 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 VAL A 4 REMARK 465 TYR A 5 REMARK 465 TYR A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 ILE A 13 REMARK 465 ALA A 14 REMARK 465 CYS A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 ALA A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 THR A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 ASP A 28 REMARK 465 ASP A 29 REMARK 465 ARG A 30 REMARK 465 GLY A 31 REMARK 465 ARG A 32 REMARK 465 PRO A 33 REMARK 465 TRP A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 36 REMARK 465 SER A 37 REMARK 465 LEU A 38 REMARK 465 ALA A 39 REMARK 465 PRO A 274 REMARK 465 GLY A 275 REMARK 465 GLY A 276 REMARK 465 GLY A 277 REMARK 465 GLY A 278 REMARK 465 ALA A 279 REMARK 465 ASP A 337 REMARK 465 ASN A 338 REMARK 465 ALA A 339 REMARK 465 THR A 340 REMARK 465 ALA A 341 REMARK 465 ALA A 342 REMARK 465 ALA A 343 REMARK 465 VAL A 462 REMARK 465 ALA A 463 REMARK 465 PRO A 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 294 C2 NAG A 1541 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 108 41.30 -141.63 REMARK 500 PRO A 164 152.97 -49.53 REMARK 500 ALA A 182 -52.67 -177.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W1O RELATED DB: PDB REMARK 900 PLANT CYTOKININ DEHYDROGENASE IN COMPLEX WITH NATIVE CYTOKININ REMARK 900 DEHYDROGENASE REMARK 900 RELATED ID: 1W1R RELATED DB: PDB REMARK 900 PLANT CYTOKININ DEHYDROGENASE IN COMPLEX WITH TRANS-ZEATIN REMARK 900 RELATED ID: 1W1S RELATED DB: PDB REMARK 900 PLANT CYTOKININ DEHYDROGENASE IN COMPLEX WITH BENZYLAMINOPURINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICTS DESCRIBED IN THE SEQADV RECORDS GIVEN BELOW REMARK 999 HAVE BEEN DESCRIBED IN BIOCHEM. BIOPHYS. RES. COMMUN. REMARK 999 255:328-333(1999), PUBMED ID 10049708 DBREF 1W1Q A 1 534 UNP Q9T0N8 CKX1_MAIZE 1 534 SEQADV 1W1Q GLY A 79 UNP Q9T0N8 ALA 79 CONFLICT SEQADV 1W1Q PHE A 254 UNP Q9T0N8 LEU 254 CONFLICT SEQRES 1 A 534 MET ALA VAL VAL TYR TYR LEU LEU LEU ALA GLY LEU ILE SEQRES 2 A 534 ALA CYS SER HIS ALA LEU ALA ALA GLY THR PRO ALA LEU SEQRES 3 A 534 GLY ASP ASP ARG GLY ARG PRO TRP PRO ALA SER LEU ALA SEQRES 4 A 534 ALA LEU ALA LEU ASP GLY LYS LEU ARG THR ASP SER ASN SEQRES 5 A 534 ALA THR ALA ALA ALA SER THR ASP PHE GLY ASN ILE THR SEQRES 6 A 534 SER ALA LEU PRO ALA ALA VAL LEU TYR PRO SER SER THR SEQRES 7 A 534 GLY ASP LEU VAL ALA LEU LEU SER ALA ALA ASN SER THR SEQRES 8 A 534 PRO GLY TRP PRO TYR THR ILE ALA PHE ARG GLY ARG GLY SEQRES 9 A 534 HIS SER LEU MET GLY GLN ALA PHE ALA PRO GLY GLY VAL SEQRES 10 A 534 VAL VAL ASN MET ALA SER LEU GLY ASP ALA ALA ALA PRO SEQRES 11 A 534 PRO ARG ILE ASN VAL SER ALA ASP GLY ARG TYR VAL ASP SEQRES 12 A 534 ALA GLY GLY GLU GLN VAL TRP ILE ASP VAL LEU ARG ALA SEQRES 13 A 534 SER LEU ALA ARG GLY VAL ALA PRO ARG SER TRP THR ASP SEQRES 14 A 534 TYR LEU TYR LEU THR VAL GLY GLY THR LEU SER ASN ALA SEQRES 15 A 534 GLY ILE SER GLY GLN ALA PHE ARG HIS GLY PRO GLN ILE SEQRES 16 A 534 SER ASN VAL LEU GLU MET ASP VAL ILE THR GLY HIS GLY SEQRES 17 A 534 GLU MET VAL THR CYS SER LYS GLN LEU ASN ALA ASP LEU SEQRES 18 A 534 PHE ASP ALA VAL LEU GLY GLY LEU GLY GLN PHE GLY VAL SEQRES 19 A 534 ILE THR ARG ALA ARG ILE ALA VAL GLU PRO ALA PRO ALA SEQRES 20 A 534 ARG ALA ARG TRP VAL ARG PHE VAL TYR THR ASP PHE ALA SEQRES 21 A 534 ALA PHE SER ALA ASP GLN GLU ARG LEU THR ALA PRO ARG SEQRES 22 A 534 PRO GLY GLY GLY GLY ALA SER PHE GLY PRO MET SER TYR SEQRES 23 A 534 VAL GLU GLY SER VAL PHE VAL ASN GLN SER LEU ALA THR SEQRES 24 A 534 ASP LEU ALA ASN THR GLY PHE PHE THR ASP ALA ASP VAL SEQRES 25 A 534 ALA ARG ILE VAL ALA LEU ALA GLY GLU ARG ASN ALA THR SEQRES 26 A 534 THR VAL TYR SER ILE GLU ALA THR LEU ASN TYR ASP ASN SEQRES 27 A 534 ALA THR ALA ALA ALA ALA ALA VAL ASP GLN GLU LEU ALA SEQRES 28 A 534 SER VAL LEU GLY THR LEU SER TYR VAL GLU GLY PHE ALA SEQRES 29 A 534 PHE GLN ARG ASP VAL ALA TYR ALA ALA PHE LEU ASP ARG SEQRES 30 A 534 VAL HIS GLY GLU GLU VAL ALA LEU ASN LYS LEU GLY LEU SEQRES 31 A 534 TRP ARG VAL PRO HIS PRO TRP LEU ASN MET PHE VAL PRO SEQRES 32 A 534 ARG SER ARG ILE ALA ASP PHE ASP ARG GLY VAL PHE LYS SEQRES 33 A 534 GLY ILE LEU GLN GLY THR ASP ILE VAL GLY PRO LEU ILE SEQRES 34 A 534 VAL TYR PRO LEU ASN LYS SER MET TRP ASP ASP GLY MET SEQRES 35 A 534 SER ALA ALA THR PRO SER GLU ASP VAL PHE TYR ALA VAL SEQRES 36 A 534 SER LEU LEU PHE SER SER VAL ALA PRO ASN ASP LEU ALA SEQRES 37 A 534 ARG LEU GLN GLU GLN ASN ARG ARG ILE LEU ARG PHE CYS SEQRES 38 A 534 ASP LEU ALA GLY ILE GLN TYR LYS THR TYR LEU ALA ARG SEQRES 39 A 534 HIS THR ASP ARG SER ASP TRP VAL ARG HIS PHE GLY ALA SEQRES 40 A 534 ALA LYS TRP ASN ARG PHE VAL GLU MET LYS ASN LYS TYR SEQRES 41 A 534 ASP PRO LYS ARG LEU LEU SER PRO GLY GLN ASP ILE PHE SEQRES 42 A 534 ASN MODRES 1W1Q ASN A 63 ASN GLYCOSYLATION SITE MODRES 1W1Q ASN A 89 ASN GLYCOSYLATION SITE MODRES 1W1Q ASN A 134 ASN GLYCOSYLATION SITE MODRES 1W1Q ASN A 294 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FAD A1535 53 HET ZIP A1536 15 HET NAG A1537 14 HET NAG A1538 14 HET NAG A1541 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM ZIP N-(3-METHYLBUT-2-EN-1-YL)-9H-PURIN-6-AMINE HETSYN ZIP ISOPENTENYLADENINE FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 ZIP C10 H13 N5 FORMUL 8 HOH *287(H2 O) HELIX 1 1 ASP A 50 ALA A 57 1 8 HELIX 2 2 SER A 77 THR A 91 1 15 HELIX 3 3 ALA A 122 ASP A 126 5 5 HELIX 4 4 VAL A 149 ALA A 159 1 11 HELIX 5 5 THR A 174 SER A 180 1 7 HELIX 6 6 GLN A 187 GLY A 192 1 6 HELIX 7 7 PRO A 193 SER A 196 5 4 HELIX 8 8 ASN A 218 LEU A 226 1 9 HELIX 9 9 ASP A 258 ALA A 271 1 14 HELIX 10 10 SER A 296 ASN A 303 1 8 HELIX 11 11 THR A 308 ARG A 322 1 15 HELIX 12 12 ALA A 344 GLY A 355 1 12 HELIX 13 13 TYR A 371 ASP A 376 1 6 HELIX 14 14 ASP A 376 LEU A 388 1 13 HELIX 15 15 ARG A 406 VAL A 414 1 9 HELIX 16 16 ALA A 40 LEU A 419 1 367 HELIX 17 17 SER A 436 TRP A 438 5 3 HELIX 18 18 ASN A 465 ALA A 484 1 20 HELIX 19 19 ASP A 497 GLY A 506 1 10 HELIX 20 20 GLY A 506 ASP A 521 1 16 HELIX 21 21 SER A 527 ASP A 531 5 5 SHEET 1 AA 4 LEU A 47 ARG A 48 0 SHEET 2 AA 4 ALA A 71 LEU A 73 -1 O VAL A 72 N ARG A 48 SHEET 3 AA 4 VAL A 117 ASN A 120 1 O VAL A 118 N LEU A 73 SHEET 4 AA 4 ILE A 98 ARG A 101 1 O ALA A 99 N VAL A 119 SHEET 1 AB 4 ILE A 133 VAL A 135 0 SHEET 2 AB 4 TYR A 141 GLY A 145 -1 O ASP A 143 N ASN A 134 SHEET 3 AB 4 GLY A 233 PRO A 244 -1 O ALA A 238 N ALA A 144 SHEET 4 AB 4 VAL A 162 PRO A 164 -1 O ALA A 163 N GLU A 243 SHEET 1 AC 5 ILE A 133 VAL A 135 0 SHEET 2 AC 5 TYR A 141 GLY A 145 -1 O ASP A 143 N ASN A 134 SHEET 3 AC 5 GLY A 233 PRO A 244 -1 O ALA A 238 N ALA A 144 SHEET 4 AC 5 VAL A 198 THR A 205 -1 N LEU A 199 O ARG A 239 SHEET 5 AC 5 MET A 210 SER A 214 -1 O VAL A 211 N VAL A 203 SHEET 1 AD 4 TYR A 286 VAL A 293 0 SHEET 2 AD 4 THR A 326 TYR A 336 -1 O VAL A 327 N PHE A 292 SHEET 3 AD 4 ARG A 248 TYR A 256 -1 O ARG A 248 N TYR A 336 SHEET 4 AD 4 ALA A 364 ALA A 370 -1 O PHE A 365 N ARG A 253 SHEET 1 AE 4 LEU A 428 ASN A 434 0 SHEET 2 AE 4 VAL A 451 LEU A 457 -1 O PHE A 452 N LEU A 433 SHEET 3 AE 4 LEU A 398 PRO A 403 -1 O LEU A 398 N LEU A 457 SHEET 4 AE 4 LYS A 489 THR A 490 -1 O LYS A 489 N PHE A 401 LINK ND2 ASN A 63 C1 NAG A1537 1555 1555 1.45 LINK ND2 ASN A 89 C1 NAG A1538 1555 1555 1.44 LINK ND1 HIS A 105 C8M FAD A1535 1555 1555 1.31 LINK ND2 ASN A 134 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 294 C1 NAG A1541 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 ALA A 129 PRO A 130 0 -3.67 CRYST1 171.356 171.356 54.175 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005836 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018459 0.00000