data_1W3A # _entry.id 1W3A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1W3A PDBE EBI-20432 WWPDB D_1290020432 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1W3F unspecified ;CRYSTAL STRUCTURE OF THE HEMOLYTIC LECTIN FROM THE MUSHROOM LAETIPORUS SULPHUREUS COMPLEXED WITH N-ACETYLLACTOSAMINE IN THE GAMMA MOTIF ; PDB 1W3G unspecified 'HEMOLYTIC LECTIN FROM THE MUSHROOM LAETIPORUS SULPHUREUS COMPLEXED WITH TWO N- ACETYLLACTOSAMINE MOLECULES.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1W3A _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2004-07-14 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mancheno, J.M.' 1 'Tateno, H.' 2 'Goldstein, I.J.' 3 'Martinez-Ripoll, M.' 4 'Hermoso, J.A.' 5 # _citation.id primary _citation.title 'Structural Analysis of the Laetiporus Sulphureus Hemolytic Pore-Forming Lectin in Complex with Sugars' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 17251 _citation.page_last ? _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15687495 _citation.pdbx_database_id_DOI 10.1074/JBC.M413933200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mancheno, J.M.' 1 ? primary 'Tateno, H.' 2 ? primary 'Goldstein, I.J.' 3 ? primary 'Martinez-Ripoll, M.' 4 ? primary 'Hermoso, J.A.' 5 ? # _cell.entry_id 1W3A _cell.length_a 101.526 _cell.length_b 101.526 _cell.length_c 193.435 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1W3A _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'HEMOLYTIC LECTIN LSLA' 35124.957 1 ? ? ? ? 2 branched man 'beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 6 ? ? ? ? 4 water nat water 18.015 77 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name alpha-lactose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTDIYIPPEGLYFRLLGFASRQVIFARNSPSPDVGLSPVNDQATDQYFSLIYGTGEHAGLYAIKSKATGKVLFSRRPAEP YVGQIDGDGRYPDNWFKIEPGKTYLSKYFRLVQPSTGTALVSRTHLQPYFWNHPQTEVFDDQYFTFLFEDMSIDKIEYDL KDGRILSSTPNVLATQTLENTSSQTQEMSFNLSQTLTQTSTFAYTAGFTIAVGTAFKAGVPIFAETEFKVDISVDNQWNW GEENTFSKTYTATFSVRAGPGETVKAVSTVDSGIINVPFTAYLSSKSTGFEVTTEGIWRGVSSWDLRHTLTSVTA ; _entity_poly.pdbx_seq_one_letter_code_can ;MTDIYIPPEGLYFRLLGFASRQVIFARNSPSPDVGLSPVNDQATDQYFSLIYGTGEHAGLYAIKSKATGKVLFSRRPAEP YVGQIDGDGRYPDNWFKIEPGKTYLSKYFRLVQPSTGTALVSRTHLQPYFWNHPQTEVFDDQYFTFLFEDMSIDKIEYDL KDGRILSSTPNVLATQTLENTSSQTQEMSFNLSQTLTQTSTFAYTAGFTIAVGTAFKAGVPIFAETEFKVDISVDNQWNW GEENTFSKTYTATFSVRAGPGETVKAVSTVDSGIINVPFTAYLSSKSTGFEVTTEGIWRGVSSWDLRHTLTSVTA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ASP n 1 4 ILE n 1 5 TYR n 1 6 ILE n 1 7 PRO n 1 8 PRO n 1 9 GLU n 1 10 GLY n 1 11 LEU n 1 12 TYR n 1 13 PHE n 1 14 ARG n 1 15 LEU n 1 16 LEU n 1 17 GLY n 1 18 PHE n 1 19 ALA n 1 20 SER n 1 21 ARG n 1 22 GLN n 1 23 VAL n 1 24 ILE n 1 25 PHE n 1 26 ALA n 1 27 ARG n 1 28 ASN n 1 29 SER n 1 30 PRO n 1 31 SER n 1 32 PRO n 1 33 ASP n 1 34 VAL n 1 35 GLY n 1 36 LEU n 1 37 SER n 1 38 PRO n 1 39 VAL n 1 40 ASN n 1 41 ASP n 1 42 GLN n 1 43 ALA n 1 44 THR n 1 45 ASP n 1 46 GLN n 1 47 TYR n 1 48 PHE n 1 49 SER n 1 50 LEU n 1 51 ILE n 1 52 TYR n 1 53 GLY n 1 54 THR n 1 55 GLY n 1 56 GLU n 1 57 HIS n 1 58 ALA n 1 59 GLY n 1 60 LEU n 1 61 TYR n 1 62 ALA n 1 63 ILE n 1 64 LYS n 1 65 SER n 1 66 LYS n 1 67 ALA n 1 68 THR n 1 69 GLY n 1 70 LYS n 1 71 VAL n 1 72 LEU n 1 73 PHE n 1 74 SER n 1 75 ARG n 1 76 ARG n 1 77 PRO n 1 78 ALA n 1 79 GLU n 1 80 PRO n 1 81 TYR n 1 82 VAL n 1 83 GLY n 1 84 GLN n 1 85 ILE n 1 86 ASP n 1 87 GLY n 1 88 ASP n 1 89 GLY n 1 90 ARG n 1 91 TYR n 1 92 PRO n 1 93 ASP n 1 94 ASN n 1 95 TRP n 1 96 PHE n 1 97 LYS n 1 98 ILE n 1 99 GLU n 1 100 PRO n 1 101 GLY n 1 102 LYS n 1 103 THR n 1 104 TYR n 1 105 LEU n 1 106 SER n 1 107 LYS n 1 108 TYR n 1 109 PHE n 1 110 ARG n 1 111 LEU n 1 112 VAL n 1 113 GLN n 1 114 PRO n 1 115 SER n 1 116 THR n 1 117 GLY n 1 118 THR n 1 119 ALA n 1 120 LEU n 1 121 VAL n 1 122 SER n 1 123 ARG n 1 124 THR n 1 125 HIS n 1 126 LEU n 1 127 GLN n 1 128 PRO n 1 129 TYR n 1 130 PHE n 1 131 TRP n 1 132 ASN n 1 133 HIS n 1 134 PRO n 1 135 GLN n 1 136 THR n 1 137 GLU n 1 138 VAL n 1 139 PHE n 1 140 ASP n 1 141 ASP n 1 142 GLN n 1 143 TYR n 1 144 PHE n 1 145 THR n 1 146 PHE n 1 147 LEU n 1 148 PHE n 1 149 GLU n 1 150 ASP n 1 151 MET n 1 152 SER n 1 153 ILE n 1 154 ASP n 1 155 LYS n 1 156 ILE n 1 157 GLU n 1 158 TYR n 1 159 ASP n 1 160 LEU n 1 161 LYS n 1 162 ASP n 1 163 GLY n 1 164 ARG n 1 165 ILE n 1 166 LEU n 1 167 SER n 1 168 SER n 1 169 THR n 1 170 PRO n 1 171 ASN n 1 172 VAL n 1 173 LEU n 1 174 ALA n 1 175 THR n 1 176 GLN n 1 177 THR n 1 178 LEU n 1 179 GLU n 1 180 ASN n 1 181 THR n 1 182 SER n 1 183 SER n 1 184 GLN n 1 185 THR n 1 186 GLN n 1 187 GLU n 1 188 MET n 1 189 SER n 1 190 PHE n 1 191 ASN n 1 192 LEU n 1 193 SER n 1 194 GLN n 1 195 THR n 1 196 LEU n 1 197 THR n 1 198 GLN n 1 199 THR n 1 200 SER n 1 201 THR n 1 202 PHE n 1 203 ALA n 1 204 TYR n 1 205 THR n 1 206 ALA n 1 207 GLY n 1 208 PHE n 1 209 THR n 1 210 ILE n 1 211 ALA n 1 212 VAL n 1 213 GLY n 1 214 THR n 1 215 ALA n 1 216 PHE n 1 217 LYS n 1 218 ALA n 1 219 GLY n 1 220 VAL n 1 221 PRO n 1 222 ILE n 1 223 PHE n 1 224 ALA n 1 225 GLU n 1 226 THR n 1 227 GLU n 1 228 PHE n 1 229 LYS n 1 230 VAL n 1 231 ASP n 1 232 ILE n 1 233 SER n 1 234 VAL n 1 235 ASP n 1 236 ASN n 1 237 GLN n 1 238 TRP n 1 239 ASN n 1 240 TRP n 1 241 GLY n 1 242 GLU n 1 243 GLU n 1 244 ASN n 1 245 THR n 1 246 PHE n 1 247 SER n 1 248 LYS n 1 249 THR n 1 250 TYR n 1 251 THR n 1 252 ALA n 1 253 THR n 1 254 PHE n 1 255 SER n 1 256 VAL n 1 257 ARG n 1 258 ALA n 1 259 GLY n 1 260 PRO n 1 261 GLY n 1 262 GLU n 1 263 THR n 1 264 VAL n 1 265 LYS n 1 266 ALA n 1 267 VAL n 1 268 SER n 1 269 THR n 1 270 VAL n 1 271 ASP n 1 272 SER n 1 273 GLY n 1 274 ILE n 1 275 ILE n 1 276 ASN n 1 277 VAL n 1 278 PRO n 1 279 PHE n 1 280 THR n 1 281 ALA n 1 282 TYR n 1 283 LEU n 1 284 SER n 1 285 SER n 1 286 LYS n 1 287 SER n 1 288 THR n 1 289 GLY n 1 290 PHE n 1 291 GLU n 1 292 VAL n 1 293 THR n 1 294 THR n 1 295 GLU n 1 296 GLY n 1 297 ILE n 1 298 TRP n 1 299 ARG n 1 300 GLY n 1 301 VAL n 1 302 SER n 1 303 SER n 1 304 TRP n 1 305 ASP n 1 306 LEU n 1 307 ARG n 1 308 HIS n 1 309 THR n 1 310 LEU n 1 311 THR n 1 312 SER n 1 313 VAL n 1 314 THR n 1 315 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'LAETIPORUS SULPHUREUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 5630 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7Z8V1_9APHY _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q7Z8V1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1W3A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 315 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7Z8V1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 315 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 315 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1W3A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.1 _exptl_crystal.density_percent_sol 70 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 4.50' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2004-04-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.934 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1W3A _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.650 _reflns.number_obs 18325 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.14000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 4.3000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 31.500 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.65 _reflns_shell.d_res_low 2.79 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.40000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.600 _reflns_shell.pdbx_redundancy 31.40 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1W3A _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16567 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.99 _refine.ls_d_res_high 2.65 _refine.ls_percent_reflns_obs 98.5 _refine.ls_R_factor_obs 0.229 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.226 _refine.ls_R_factor_R_free 0.280 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 889 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.919 _refine.correlation_coeff_Fo_to_Fc_free 0.877 _refine.B_iso_mean 42.93 _refine.aniso_B[1][1] 0.00000 _refine.aniso_B[2][2] 0.00000 _refine.aniso_B[3][3] -0.01000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.399 _refine.pdbx_overall_ESU_R_Free 0.301 _refine.overall_SU_ML 0.212 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 10.270 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2467 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 2603 _refine_hist.d_res_high 2.65 _refine_hist.d_res_low 14.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 2590 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 2239 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.315 1.949 ? 3521 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.059 3.000 ? 5220 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.960 5.000 ? 311 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 392 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 2847 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 551 'X-RAY DIFFRACTION' ? r_nbd_refined 0.206 0.200 ? 413 'X-RAY DIFFRACTION' ? r_nbd_other 0.237 0.200 ? 2491 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.087 0.200 ? 1449 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.165 0.200 ? 82 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.266 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.287 0.200 ? 68 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.663 0.200 ? 6 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.714 1.500 ? 1553 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.313 2.000 ? 2526 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.072 3.000 ? 1036 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.911 4.500 ? 995 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.65 _refine_ls_shell.d_res_low 2.72 _refine_ls_shell.number_reflns_R_work 1168 _refine_ls_shell.R_factor_R_work 0.3000 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.4390 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1W3A _struct.title 'Three dimensional structure of a novel pore-forming lectin from the mushroom Laetiporus sulphureus' _struct.pdbx_descriptor 'HEMOLYTIC LECTIN LSLA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1W3A _struct_keywords.pdbx_keywords 'TOXIN/SUGAR BINDING PROTEIN' _struct_keywords.text 'TOXIN, PORE-FORMING TOXIN, HEMOLYTIC LECTIN, OLIGOMER, BETA-TREFOIL, SUGAR-BINDING PROTEIN, TOXIN-SUGAR BINDING PROTEIN complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 44 ? GLN A 46 ? THR A 44 GLN A 46 5 ? 3 HELX_P HELX_P2 2 GLY A 55 ? HIS A 57 ? GLY A 55 HIS A 57 5 ? 3 HELX_P HELX_P3 3 PRO A 92 ? ASN A 94 ? PRO A 92 ASN A 94 5 ? 3 HELX_P HELX_P4 4 THR A 103 ? LEU A 105 ? THR A 103 LEU A 105 5 ? 3 HELX_P HELX_P5 5 PRO A 114 ? THR A 116 ? PRO A 114 THR A 116 5 ? 3 HELX_P HELX_P6 6 PHE A 139 ? ASP A 141 ? PHE A 139 ASP A 141 5 ? 3 HELX_P HELX_P7 7 LEU A 160 ? ASP A 162 ? LEU A 160 ASP A 162 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id GLC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id O4 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id GAL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C1 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLC _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GAL _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.427 _struct_conn.pdbx_value_order sing _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 29 A . ? SER 29 A PRO 30 A ? PRO 30 A 1 -1.61 2 GLU 79 A . ? GLU 79 A PRO 80 A ? PRO 80 A 1 -4.82 3 GLN 127 A . ? GLN 127 A PRO 128 A ? PRO 128 A 1 -7.92 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 5 ? AC ? 2 ? AD ? 2 ? AE ? 2 ? AF ? 3 ? AG ? 3 ? AH ? 2 ? AI ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel AF 1 2 ? anti-parallel AF 2 3 ? anti-parallel AG 1 2 ? anti-parallel AG 2 3 ? anti-parallel AH 1 2 ? anti-parallel AI 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 13 ? GLY A 17 ? PHE A 13 GLY A 17 AA 2 TYR A 143 ? PHE A 148 ? TYR A 143 PHE A 148 AA 3 PHE A 109 ? GLN A 113 ? PHE A 109 GLN A 113 AA 4 LYS A 97 ? PRO A 100 ? LYS A 97 PRO A 100 AB 1 PHE A 13 ? GLY A 17 ? PHE A 13 GLY A 17 AB 2 TYR A 143 ? PHE A 148 ? TYR A 143 PHE A 148 AB 3 PHE A 109 ? GLN A 113 ? PHE A 109 GLN A 113 AB 4 THR A 118 ? SER A 122 ? THR A 118 SER A 122 AB 5 PHE A 130 ? PRO A 134 ? PHE A 130 PRO A 134 AC 1 VAL A 23 ? ALA A 26 ? VAL A 23 ALA A 26 AC 2 VAL A 34 ? SER A 37 ? VAL A 34 SER A 37 AD 1 PHE A 48 ? TYR A 52 ? PHE A 48 TYR A 52 AD 2 TYR A 61 ? SER A 65 ? TYR A 61 SER A 65 AE 1 VAL A 71 ? SER A 74 ? VAL A 71 SER A 74 AE 2 VAL A 82 ? ILE A 85 ? VAL A 82 ILE A 85 AF 1 MET A 151 ? TYR A 158 ? MET A 151 TYR A 158 AF 2 VAL A 264 ? SER A 285 ? VAL A 264 SER A 285 AF 3 ARG A 164 ? ILE A 165 ? ARG A 164 ILE A 165 AG 1 MET A 151 ? TYR A 158 ? MET A 151 TYR A 158 AG 2 VAL A 264 ? SER A 285 ? VAL A 264 SER A 285 AG 3 THR A 169 ? ALA A 174 ? THR A 169 ALA A 174 AH 1 ALA A 215 ? LYS A 217 ? ALA A 215 LYS A 217 AH 2 GLN A 237 ? ASN A 239 ? GLN A 237 ASN A 239 AI 1 VAL A 220 ? ILE A 222 ? VAL A 220 ILE A 222 AI 2 PHE A 228 ? ASP A 231 ? PHE A 228 ASP A 231 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 16 ? N LEU A 16 O THR A 145 ? O THR A 145 AA 2 3 N PHE A 144 ? N PHE A 144 O PHE A 109 ? O PHE A 109 AA 3 4 N VAL A 112 ? N VAL A 112 O LYS A 97 ? O LYS A 97 AB 1 2 N LEU A 16 ? N LEU A 16 O THR A 145 ? O THR A 145 AB 2 3 N PHE A 144 ? N PHE A 144 O PHE A 109 ? O PHE A 109 AB 3 4 N GLN A 113 ? N GLN A 113 O THR A 118 ? O THR A 118 AB 4 5 N VAL A 121 ? N VAL A 121 O TRP A 131 ? O TRP A 131 AC 1 2 N PHE A 25 ? N PHE A 25 O GLY A 35 ? O GLY A 35 AD 1 2 N ILE A 51 ? N ILE A 51 O ALA A 62 ? O ALA A 62 AE 1 2 N PHE A 73 ? N PHE A 73 O GLY A 83 ? O GLY A 83 AF 1 2 N GLU A 157 ? N GLU A 157 O THR A 280 ? O THR A 280 AF 2 3 N ASN A 276 ? N ASN A 276 O ARG A 164 ? O ARG A 164 AG 1 2 N GLU A 157 ? N GLU A 157 O THR A 280 ? O THR A 280 AG 2 3 N SER A 272 ? N SER A 272 O THR A 169 ? O THR A 169 AH 1 2 N PHE A 216 ? N PHE A 216 O TRP A 238 ? O TRP A 238 AI 1 2 N ILE A 222 ? N ILE A 222 O LYS A 229 ? O LYS A 229 # _database_PDB_matrix.entry_id 1W3A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1W3A _atom_sites.fract_transf_matrix[1][1] 0.009850 _atom_sites.fract_transf_matrix[1][2] 0.005687 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011373 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005170 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 TRP 95 95 95 TRP TRP A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 HIS 125 125 125 HIS HIS A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 PRO 128 128 128 PRO PRO A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 PHE 130 130 130 PHE PHE A . n A 1 131 TRP 131 131 131 TRP TRP A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 GLN 135 135 135 GLN GLN A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 GLN 142 142 142 GLN GLN A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 THR 145 145 145 THR THR A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 MET 151 151 151 MET MET A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 ARG 164 164 164 ARG ARG A . n A 1 165 ILE 165 165 165 ILE ILE A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 PRO 170 170 170 PRO PRO A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 GLN 176 176 176 GLN GLN A . n A 1 177 THR 177 177 177 THR THR A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 GLN 184 184 184 GLN GLN A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 GLN 186 186 186 GLN GLN A . n A 1 187 GLU 187 187 187 GLU GLU A . n A 1 188 MET 188 188 188 MET MET A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 PHE 190 190 190 PHE PHE A . n A 1 191 ASN 191 191 191 ASN ASN A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 GLN 194 194 194 GLN GLN A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 THR 197 197 197 THR THR A . n A 1 198 GLN 198 198 198 GLN GLN A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 SER 200 200 200 SER SER A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 PHE 202 202 202 PHE PHE A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 TYR 204 204 204 TYR TYR A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 PHE 208 208 208 PHE PHE A . n A 1 209 THR 209 209 209 THR THR A . n A 1 210 ILE 210 210 210 ILE ILE A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 ALA 215 215 215 ALA ALA A . n A 1 216 PHE 216 216 216 PHE PHE A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 PRO 221 221 221 PRO PRO A . n A 1 222 ILE 222 222 222 ILE ILE A . n A 1 223 PHE 223 223 223 PHE PHE A . n A 1 224 ALA 224 224 224 ALA ALA A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 GLU 227 227 227 GLU GLU A . n A 1 228 PHE 228 228 228 PHE PHE A . n A 1 229 LYS 229 229 229 LYS LYS A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 ASP 231 231 231 ASP ASP A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 SER 233 233 233 SER SER A . n A 1 234 VAL 234 234 234 VAL VAL A . n A 1 235 ASP 235 235 235 ASP ASP A . n A 1 236 ASN 236 236 236 ASN ASN A . n A 1 237 GLN 237 237 237 GLN GLN A . n A 1 238 TRP 238 238 238 TRP TRP A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 TRP 240 240 240 TRP TRP A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 GLU 242 242 242 GLU GLU A . n A 1 243 GLU 243 243 243 GLU GLU A . n A 1 244 ASN 244 244 244 ASN ASN A . n A 1 245 THR 245 245 245 THR THR A . n A 1 246 PHE 246 246 246 PHE PHE A . n A 1 247 SER 247 247 247 SER SER A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 THR 249 249 249 THR THR A . n A 1 250 TYR 250 250 250 TYR TYR A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 THR 253 253 253 THR THR A . n A 1 254 PHE 254 254 254 PHE PHE A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 VAL 256 256 256 VAL VAL A . n A 1 257 ARG 257 257 257 ARG ARG A . n A 1 258 ALA 258 258 258 ALA ALA A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 PRO 260 260 260 PRO PRO A . n A 1 261 GLY 261 261 261 GLY GLY A . n A 1 262 GLU 262 262 262 GLU GLU A . n A 1 263 THR 263 263 263 THR THR A . n A 1 264 VAL 264 264 264 VAL VAL A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 ALA 266 266 266 ALA ALA A . n A 1 267 VAL 267 267 267 VAL VAL A . n A 1 268 SER 268 268 268 SER SER A . n A 1 269 THR 269 269 269 THR THR A . n A 1 270 VAL 270 270 270 VAL VAL A . n A 1 271 ASP 271 271 271 ASP ASP A . n A 1 272 SER 272 272 272 SER SER A . n A 1 273 GLY 273 273 273 GLY GLY A . n A 1 274 ILE 274 274 274 ILE ILE A . n A 1 275 ILE 275 275 275 ILE ILE A . n A 1 276 ASN 276 276 276 ASN ASN A . n A 1 277 VAL 277 277 277 VAL VAL A . n A 1 278 PRO 278 278 278 PRO PRO A . n A 1 279 PHE 279 279 279 PHE PHE A . n A 1 280 THR 280 280 280 THR THR A . n A 1 281 ALA 281 281 281 ALA ALA A . n A 1 282 TYR 282 282 282 TYR TYR A . n A 1 283 LEU 283 283 283 LEU LEU A . n A 1 284 SER 284 284 284 SER SER A . n A 1 285 SER 285 285 285 SER SER A . n A 1 286 LYS 286 286 286 LYS LYS A . n A 1 287 SER 287 287 287 SER SER A . n A 1 288 THR 288 288 288 THR THR A . n A 1 289 GLY 289 289 289 GLY GLY A . n A 1 290 PHE 290 290 290 PHE PHE A . n A 1 291 GLU 291 291 291 GLU GLU A . n A 1 292 VAL 292 292 292 VAL VAL A . n A 1 293 THR 293 293 293 THR THR A . n A 1 294 THR 294 294 294 THR THR A . n A 1 295 GLU 295 295 295 GLU GLU A . n A 1 296 GLY 296 296 296 GLY GLY A . n A 1 297 ILE 297 297 297 ILE ILE A . n A 1 298 TRP 298 298 298 TRP TRP A . n A 1 299 ARG 299 299 299 ARG ARG A . n A 1 300 GLY 300 300 300 GLY GLY A . n A 1 301 VAL 301 301 301 VAL VAL A . n A 1 302 SER 302 302 302 SER SER A . n A 1 303 SER 303 303 303 SER SER A . n A 1 304 TRP 304 304 304 TRP TRP A . n A 1 305 ASP 305 305 305 ASP ASP A . n A 1 306 LEU 306 306 306 LEU LEU A . n A 1 307 ARG 307 307 307 ARG ARG A . n A 1 308 HIS 308 308 308 HIS HIS A . n A 1 309 THR 309 309 309 THR THR A . n A 1 310 LEU 310 310 310 LEU LEU A . n A 1 311 THR 311 311 311 THR THR A . n A 1 312 SER 312 312 312 SER SER A . n A 1 313 VAL 313 313 313 VAL VAL A . n A 1 314 THR 314 314 314 THR THR A . n A 1 315 ALA 315 315 315 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL 1 1316 1316 GOL GOL A . D 3 GOL 1 1317 1317 GOL GOL A . E 3 GOL 1 1318 1318 GOL GOL A . F 3 GOL 1 1319 1319 GOL GOL A . G 3 GOL 1 1320 1320 GOL GOL A . H 3 GOL 1 1321 1321 GOL GOL A . I 4 HOH 1 2001 2001 HOH HOH A . I 4 HOH 2 2002 2002 HOH HOH A . I 4 HOH 3 2003 2003 HOH HOH A . I 4 HOH 4 2004 2004 HOH HOH A . I 4 HOH 5 2005 2005 HOH HOH A . I 4 HOH 6 2006 2006 HOH HOH A . I 4 HOH 7 2007 2007 HOH HOH A . I 4 HOH 8 2008 2008 HOH HOH A . I 4 HOH 9 2009 2009 HOH HOH A . I 4 HOH 10 2010 2010 HOH HOH A . I 4 HOH 11 2011 2011 HOH HOH A . I 4 HOH 12 2012 2012 HOH HOH A . I 4 HOH 13 2013 2013 HOH HOH A . I 4 HOH 14 2014 2014 HOH HOH A . I 4 HOH 15 2015 2015 HOH HOH A . I 4 HOH 16 2016 2016 HOH HOH A . I 4 HOH 17 2017 2017 HOH HOH A . I 4 HOH 18 2018 2018 HOH HOH A . I 4 HOH 19 2019 2019 HOH HOH A . I 4 HOH 20 2020 2020 HOH HOH A . I 4 HOH 21 2021 2021 HOH HOH A . I 4 HOH 22 2022 2022 HOH HOH A . I 4 HOH 23 2023 2023 HOH HOH A . I 4 HOH 24 2024 2024 HOH HOH A . I 4 HOH 25 2025 2025 HOH HOH A . I 4 HOH 26 2026 2026 HOH HOH A . I 4 HOH 27 2027 2027 HOH HOH A . I 4 HOH 28 2028 2028 HOH HOH A . I 4 HOH 29 2029 2029 HOH HOH A . I 4 HOH 30 2030 2030 HOH HOH A . I 4 HOH 31 2031 2031 HOH HOH A . I 4 HOH 32 2032 2032 HOH HOH A . I 4 HOH 33 2033 2033 HOH HOH A . I 4 HOH 34 2034 2034 HOH HOH A . I 4 HOH 35 2035 2035 HOH HOH A . I 4 HOH 36 2036 2036 HOH HOH A . I 4 HOH 37 2037 2037 HOH HOH A . I 4 HOH 38 2038 2038 HOH HOH A . I 4 HOH 39 2039 2039 HOH HOH A . I 4 HOH 40 2040 2040 HOH HOH A . I 4 HOH 41 2041 2041 HOH HOH A . I 4 HOH 42 2042 2042 HOH HOH A . I 4 HOH 43 2043 2043 HOH HOH A . I 4 HOH 44 2044 2044 HOH HOH A . I 4 HOH 45 2045 2045 HOH HOH A . I 4 HOH 46 2046 2046 HOH HOH A . I 4 HOH 47 2047 2047 HOH HOH A . I 4 HOH 48 2048 2048 HOH HOH A . I 4 HOH 49 2049 2049 HOH HOH A . I 4 HOH 50 2050 2050 HOH HOH A . I 4 HOH 51 2051 2051 HOH HOH A . I 4 HOH 52 2052 2052 HOH HOH A . I 4 HOH 53 2053 2053 HOH HOH A . I 4 HOH 54 2054 2054 HOH HOH A . I 4 HOH 55 2055 2055 HOH HOH A . I 4 HOH 56 2056 2056 HOH HOH A . I 4 HOH 57 2057 2057 HOH HOH A . I 4 HOH 58 2058 2058 HOH HOH A . I 4 HOH 59 2059 2059 HOH HOH A . I 4 HOH 60 2060 2060 HOH HOH A . I 4 HOH 61 2061 2061 HOH HOH A . I 4 HOH 62 2062 2062 HOH HOH A . I 4 HOH 63 2063 2063 HOH HOH A . I 4 HOH 64 2064 2064 HOH HOH A . I 4 HOH 65 2065 2065 HOH HOH A . I 4 HOH 66 2066 2066 HOH HOH A . I 4 HOH 67 2067 2067 HOH HOH A . I 4 HOH 68 2068 2068 HOH HOH A . I 4 HOH 69 2069 2069 HOH HOH A . I 4 HOH 70 2070 2070 HOH HOH A . I 4 HOH 71 2071 2071 HOH HOH A . I 4 HOH 72 2072 2072 HOH HOH A . I 4 HOH 73 2073 2073 HOH HOH A . I 4 HOH 74 2074 2074 HOH HOH A . I 4 HOH 75 2075 2075 HOH HOH A . I 4 HOH 76 2076 2076 HOH HOH A . I 4 HOH 77 2077 2077 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900008 _pdbx_molecule_features.name alpha-lactose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900008 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 50.7630000000 -0.8660254038 -0.5000000000 0.0000000000 87.9240951446 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 101.5260000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 50.7630000000 -0.8660254038 -0.5000000000 0.0000000000 87.9240951446 0.0000000000 0.0000000000 -1.0000000000 96.7175000000 5 'crystal symmetry operation' 12_555 x,x-y,-z+1/2 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 96.7175000000 6 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 101.5260000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 96.7175000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-01 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' Other 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' entity_name_com 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_site 17 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_atom_id' 10 4 'Structure model' '_atom_site.label_comp_id' 11 4 'Structure model' '_chem_comp.formula' 12 4 'Structure model' '_chem_comp.formula_weight' 13 4 'Structure model' '_chem_comp.id' 14 4 'Structure model' '_chem_comp.mon_nstd_flag' 15 4 'Structure model' '_chem_comp.name' 16 4 'Structure model' '_chem_comp.pdbx_synonyms' 17 4 'Structure model' '_chem_comp.type' 18 4 'Structure model' '_entity.formula_weight' 19 4 'Structure model' '_entity.pdbx_description' 20 4 'Structure model' '_entity.type' 21 4 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 MOSFLM 'data reduction' . ? 2 SCALE 'data scaling' . ? 3 SOLVE phasing . ? 4 MLPHARE phasing . ? 5 SHARP phasing . ? 6 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; 700 ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2046 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2046 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 1.62 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 93 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 93 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 93 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.77 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.47 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 8 ? ? -69.42 -178.83 2 1 PRO A 30 ? ? -73.42 -162.01 3 1 ASP A 45 ? ? -14.92 -46.01 4 1 ARG A 76 ? ? -97.96 -61.61 5 1 ASP A 88 ? ? -55.40 71.08 6 1 THR A 103 ? ? 60.45 -115.70 7 1 TRP A 131 ? ? -154.78 -158.21 8 1 THR A 175 ? ? -73.80 -77.96 9 1 GLN A 176 ? ? -10.95 -96.58 10 1 THR A 177 ? ? 13.72 64.30 11 1 THR A 181 ? ? -151.79 73.41 12 1 SER A 182 ? ? 16.46 -90.51 13 1 SER A 183 ? ? -97.50 -139.29 14 1 GLN A 184 ? ? -29.38 -72.67 15 1 THR A 185 ? ? 38.53 -135.81 16 1 GLN A 186 ? ? -170.98 -49.78 17 1 THR A 205 ? ? -135.04 -52.01 18 1 ALA A 224 ? ? -89.25 -79.13 19 1 GLU A 225 ? ? -144.96 -32.43 20 1 ASP A 235 ? ? -110.64 71.86 21 1 VAL A 256 ? ? -146.62 -96.86 22 1 ARG A 257 ? ? -10.48 119.88 23 1 ALA A 258 ? ? -169.40 75.14 24 1 THR A 311 ? ? -129.95 -149.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ALA 315 ? CA ? A ALA 315 CA 2 1 Y 1 A ALA 315 ? C ? A ALA 315 C 3 1 Y 1 A ALA 315 ? O ? A ALA 315 O 4 1 Y 1 A ALA 315 ? CB ? A ALA 315 CB # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 A LBT 1315 n B 2 GAL 2 B GAL 2 A LBT 1315 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpb1-4DGlcpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[a2122h-1a_1-5][a2112h-1b_1-5]/1-2/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Glcp]{[(4+1)][b-D-Galp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 GAL _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 GAL 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH #