HEADER TRANSFERASE 23-JUL-04 1W4G TITLE PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, AND TITLE 2 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE TITLE 3 FOLDING TRANSITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 125-169; COMPND 5 SYNONYM: DIHYDROLIPOAMIDE ACETYLTRANSFERASE; COMPND 6 EC: 2.3.1.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS PERIPHERAL-SUBUNIT BINDING DOMAIN, ULTRAFAST FOLDING, HOMOLOGUES, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.FERGUSON,T.D.SHARPE,P.J.SCHARTAU,M.D.ALLEN,C.M.JOHNSON,S.SATO, AUTHOR 2 A.R.FERSHT REVDAT 3 15-MAY-24 1W4G 1 REMARK REVDAT 2 24-FEB-09 1W4G 1 VERSN REVDAT 1 20-JUL-05 1W4G 0 JRNL AUTH N.FERGUSON,T.D.SHARPE,P.J.SCHARTAU,S.SATO,M.D.ALLEN, JRNL AUTH 2 C.M.JOHNSON,T.J.RUTHERFORD,A.R.FERSHT JRNL TITL ULTRA-FAST BARRIER-LIMITED FOLDING IN THE PERIPHERAL JRNL TITL 2 SUBUNIT-BINDING DOMAIN FAMILY. JRNL REF J.MOL.BIOL. V. 353 427 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16168437 JRNL DOI 10.1016/J.JMB.2005.08.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1W4G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290020568. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O, 3MM SAMPLE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, AZARA, CNS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 21 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS > 0.25A REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE- RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N LABELED PROTEIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN A ENGINEERED MUTATION TYR 138 TRP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 127 -47.07 -143.49 REMARK 500 1 LYS A 154 -78.86 58.14 REMARK 500 1 ALA A 168 30.82 -98.40 REMARK 500 2 ARG A 127 77.72 -165.31 REMARK 500 2 LYS A 154 -104.80 48.02 REMARK 500 2 ALA A 168 31.06 -92.73 REMARK 500 3 ARG A 128 172.80 -56.08 REMARK 500 3 LYS A 154 -82.39 57.64 REMARK 500 3 ALA A 168 30.97 -93.59 REMARK 500 4 LYS A 154 -81.04 55.65 REMARK 500 4 ALA A 168 31.14 -94.22 REMARK 500 5 LYS A 154 -83.27 59.62 REMARK 500 5 ALA A 168 31.02 -93.89 REMARK 500 6 ARG A 127 -174.31 -61.29 REMARK 500 6 LYS A 154 -85.64 56.41 REMARK 500 6 ALA A 168 31.04 -95.38 REMARK 500 7 LYS A 154 -86.09 56.60 REMARK 500 8 LYS A 154 -83.13 56.74 REMARK 500 9 LYS A 154 -82.30 59.26 REMARK 500 10 LYS A 154 -83.81 57.84 REMARK 500 10 ALA A 168 31.07 -93.32 REMARK 500 11 LYS A 154 -87.09 54.12 REMARK 500 11 ALA A 168 31.03 -96.65 REMARK 500 12 ARG A 127 -46.57 -146.93 REMARK 500 12 LYS A 154 -87.28 53.91 REMARK 500 13 ALA A 131 146.34 -170.05 REMARK 500 13 LYS A 154 -82.70 57.53 REMARK 500 13 ALA A 168 30.98 -94.75 REMARK 500 14 LYS A 154 -86.52 55.10 REMARK 500 14 ALA A 168 31.11 -96.77 REMARK 500 15 LYS A 154 -88.28 51.62 REMARK 500 16 LYS A 154 -77.97 58.67 REMARK 500 16 ALA A 168 31.06 -92.70 REMARK 500 17 LYS A 154 -85.18 57.02 REMARK 500 18 GLN A 150 82.82 -69.63 REMARK 500 18 LYS A 154 -84.97 56.51 REMARK 500 18 ALA A 168 30.98 -97.75 REMARK 500 19 LYS A 154 -87.22 53.58 REMARK 500 20 ALA A 131 148.82 -170.09 REMARK 500 20 LYS A 154 -86.34 56.30 REMARK 500 20 ALA A 168 30.95 -96.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B5S RELATED DB: PDB REMARK 900 DIHYDROLIPOYL TRANSACETYLASE CATALYTIC DOMAIN (RESIDUES 184-425) REMARK 900 FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 1EBD RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE DEHYDROGENASE COMPLEXED WITH THE BINDING DOMAIN OF REMARK 900 THE DIHYDROLIPOAMIDE ACETYLASE REMARK 900 RELATED ID: 1LAB RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE REMARK 900 DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (LIPOYLATED DOMAIN, REMARK 900 RESIDUES 1 - 80) (NMR, 11 STRUCTURES) REMARK 900 RELATED ID: 1LAC RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE REMARK 900 DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (LIPOYLATED DOMAIN, REMARK 900 RESIDUES 1 - 80) (NMR, AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1W3D RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE PERIPHERAL-SUBUNIT BINDING DOMAIN OF BACILLUS REMARK 900 STEAROTHERMOPHILUS E2P REMARK 900 RELATED ID: 2PDD RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE REMARK 900 DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (PYRUVATE DECARBOXYLASE REMARK 900 (E1P) / DIHYDROLIPOAMIDE DEHYDROGENASE (E3) 43 RESIDUE BINDING REMARK 900 DOMAIN) (NMR, 35 STRUCTURES) REMARK 900 RELATED ID: 2PDE RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE REMARK 900 DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (PYRUVATE DECARBOXYLASE REMARK 900 (E1P) / DIHYDROLIPOAMIDE DEHYDROGENASE (E3) 43 RESIDUE BINDING REMARK 900 DOMAIN) (NMR, AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1W4E RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND REMARK 900 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE REMARK 900 TRANSITIONS REMARK 900 RELATED ID: 1W4F RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND REMARK 900 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE REMARK 900 TRANSITIONS REMARK 900 RELATED ID: 1W4H RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND REMARK 900 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE REMARK 900 TRANSITIONS REMARK 900 RELATED ID: 1W4I RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS REMARK 900 RELATED ID: 1W4J RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS REMARK 900 RELATED ID: 1W4K RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS REMARK 999 REMARK 999 SEQUENCE REMARK 999 MUTATION Y138W WAS REQUIRED FOR FLUORESCENCE MEASUREMENT DBREF 1W4G A 124 125 PDB 1W4G 1W4G 124 125 DBREF 1W4G A 126 170 UNP P11961 ODP2_BACST 125 169 SEQADV 1W4G TRP A 138 UNP P11961 TYR 138 ENGINEERED MUTATION SEQRES 1 A 47 GLY SER ASN ARG ARG VAL ILE ALA MET PRO SER VAL ARG SEQRES 2 A 47 LYS TRP ALA ARG GLU LYS GLY VAL ASP ILE ARG LEU VAL SEQRES 3 A 47 GLN GLY THR GLY LYS ASN GLY ARG VAL LEU LYS GLU ASP SEQRES 4 A 47 ILE ASP ALA PHE LEU ALA GLY GLY HELIX 1 1 MET A 132 GLY A 143 1 12 HELIX 2 2 ASP A 145 VAL A 149 5 5 HELIX 3 3 LEU A 159 ALA A 168 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1