HEADER TRANSFERASE 23-JUL-04 1W4H TITLE PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND HYPERTHERMOPHILIC TITLE 2 BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE TRANSITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 108-152; COMPND 5 SYNONYM: DIHYDROLIPOAMIDE ACETYLTRANSFERASE; COMPND 6 EC: 2.3.1.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS ULTRAFAST FOLDING, HOMOLOGUES, PERIPHERAL-SUBUNIT BINDING DOMAINS, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.FERGUSON,T.D.SHARPE,P.J.SCHARTAU,M.D.ALLEN,C.M.JOHNSON,A.R.FERSHT REVDAT 5 15-MAY-24 1W4H 1 REMARK REVDAT 4 24-FEB-09 1W4H 1 VERSN REVDAT 3 20-DEC-06 1W4H 1 JRNL REVDAT 2 02-SEP-05 1W4H 1 SOURCE REVDAT 1 20-JUL-05 1W4H 0 JRNL AUTH N.FERGUSON,T.D.SHARPE,P.J.SCHARTAU,S.SATO,M.D.ALLEN, JRNL AUTH 2 C.M.JOHNSON,T.J.RUTHERFORD,A.R.FERSHT JRNL TITL ULTRA-FAST BARRIER-LIMITED FOLDING IN THE PERIPHERAL JRNL TITL 2 SUBUNIT-BINDING DOMAIN FAMILY. JRNL REF J.MOL.BIOL. V. 353 427 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16168437 JRNL DOI 10.1016/J.JMB.2005.08.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1W4H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290020571. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95%WATER/5% D20, 3MM SAMPLE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, AZARA, CNS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATIONS > 0.25 REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C,15N LABELLED MATERIAL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 154 91.40 -57.22 REMARK 500 2 ALA A 130 -46.12 -152.75 REMARK 500 2 VAL A 154 95.33 -55.39 REMARK 500 2 LYS A 169 49.04 -90.58 REMARK 500 3 VAL A 154 85.40 -60.61 REMARK 500 3 ALA A 168 42.01 -95.39 REMARK 500 4 VAL A 154 89.43 -56.70 REMARK 500 5 ALA A 130 25.93 -148.74 REMARK 500 5 VAL A 154 88.58 -57.57 REMARK 500 5 ALA A 168 35.11 -96.08 REMARK 500 6 ALA A 130 71.37 -167.02 REMARK 500 6 VAL A 154 88.47 -56.88 REMARK 500 6 ALA A 168 33.74 -98.24 REMARK 500 7 ALA A 130 -39.96 -175.98 REMARK 500 7 VAL A 154 88.46 -58.32 REMARK 500 7 ALA A 168 37.57 -95.60 REMARK 500 8 VAL A 154 88.79 -57.82 REMARK 500 9 VAL A 154 90.62 -59.61 REMARK 500 10 VAL A 154 96.98 -56.16 REMARK 500 10 LYS A 169 39.49 32.27 REMARK 500 11 VAL A 154 85.07 -61.01 REMARK 500 11 LYS A 169 85.41 61.89 REMARK 500 12 VAL A 154 86.92 -59.51 REMARK 500 13 ASN A 143 29.39 49.89 REMARK 500 13 VAL A 154 85.95 -60.44 REMARK 500 14 VAL A 154 91.61 -61.77 REMARK 500 14 ALA A 168 30.71 -96.87 REMARK 500 15 VAL A 154 91.23 -59.33 REMARK 500 15 LYS A 169 91.05 58.51 REMARK 500 16 ALA A 130 -65.37 69.67 REMARK 500 16 VAL A 154 94.08 -58.96 REMARK 500 17 VAL A 154 91.68 -55.50 REMARK 500 17 ALA A 168 43.17 -95.10 REMARK 500 18 ALA A 130 -39.65 -161.50 REMARK 500 19 ALA A 130 36.70 -142.91 REMARK 500 19 VAL A 154 90.37 -59.41 REMARK 500 20 VAL A 154 98.38 -55.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B5S RELATED DB: PDB REMARK 900 DIHYDROLIPOYL TRANSACETYLASE CATALYTIC DOMAIN (RESIDUES 184-425) REMARK 900 FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 1EBD RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE DEHYDROGENASE COMPLEXED WITH THE BINDING DOMAIN OF REMARK 900 THE DIHYDROLIPOAMIDE ACETYLASE REMARK 900 RELATED ID: 1LAB RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE REMARK 900 DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (LIPOYLATED DOMAIN, REMARK 900 RESIDUES 1 - 80) (NMR, 11 STRUCTURES) REMARK 900 RELATED ID: 1LAC RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE REMARK 900 DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (LIPOYLATED DOMAIN, REMARK 900 RESIDUES 1 - 80) (NMR, AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1W3D RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE PERIPHERAL-SUBUNIT BINDING DOMAIN OF BACILLUS REMARK 900 STEAROTHERMOPHILUS E2P REMARK 900 RELATED ID: 2PDD RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE REMARK 900 DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (PYRUVATE DECARBOXYLASE REMARK 900 (E1P) / DIHYDROLIPOAMIDE DEHYDROGENASE (E3) 43 RESIDUE BINDING REMARK 900 DOMAIN) (NMR, 35 STRUCTURES) REMARK 900 RELATED ID: 2PDE RELATED DB: PDB REMARK 900 DIHYDROLIPOAMIDE ACETYLTRANSFERASE (E2P) SUBUNIT OF THE PYRUVATE REMARK 900 DEHYDROGENASE (PDH) MULTIENZYME COMPLEX (PYRUVATE DECARBOXYLASE REMARK 900 (E1P) / DIHYDROLIPOAMIDE DEHYDROGENASE (E3) 43 RESIDUE BINDING REMARK 900 DOMAIN) (NMR, AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1W4E RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND REMARK 900 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE REMARK 900 TRANSITIONS REMARK 900 RELATED ID: 1W4F RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND REMARK 900 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE REMARK 900 TRANSITIONS REMARK 900 RELATED ID: 1W4G RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND REMARK 900 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE REMARK 900 TRANSITIONS REMARK 900 RELATED ID: 1W4I RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS REMARK 900 RELATED ID: 1W4J RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS REMARK 900 RELATED ID: 1W4K RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS DBREF 1W4H A 124 125 PDB 1W4H 1W4H 124 125 DBREF 1W4H A 126 170 UNP P11961 ODP2_BACST 108 152 SEQRES 1 A 47 GLY SER GLN ASN ASN ASP ALA LEU SER PRO ALA ILE ARG SEQRES 2 A 47 ARG LEU LEU ALA GLU HIS ASN LEU ASP ALA SER ALA ILE SEQRES 3 A 47 LYS GLY THR GLY VAL GLY GLY ARG LEU THR ARG GLU ASP SEQRES 4 A 47 VAL GLU LYS HIS LEU ALA LYS ALA HELIX 1 1 SER A 132 HIS A 142 1 11 HELIX 2 2 ASP A 145 ILE A 149 5 5 HELIX 3 3 THR A 159 ALA A 170 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1