HEADER TRANSFERASE 23-JUL-04 1W4I TITLE PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, AND TITLE 2 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE TITLE 3 TRANSITIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE DEHYDROGENASE E2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 93-152; COMPND 5 SYNONYM: DIHYDROLIPOAMIDE ACETYLTRANSFERASE; COMPND 6 EC: 2.3.1.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM; SOURCE 3 ORGANISM_TAXID: 13773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS TRANSFERASE, PERIPHERAL-SUBUNIT BINDING DOMAIN, ULTRAFAST FOLDING, KEYWDS 2 HOMOLOGUES EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.FERGUSON,T.D.SHARPE,P.J.SCHARTAU,M.D.ALLEN,C.M.JOHNSON,S.SATO, AUTHOR 2 A.R.FERSHT REVDAT 3 15-MAY-24 1W4I 1 REMARK REVDAT 2 24-FEB-09 1W4I 1 VERSN REVDAT 1 20-JUL-05 1W4I 0 JRNL AUTH N.FERGUSON,T.D.SHARPE,P.J.SCHARTAU,S.SATO,M.D.ALLEN, JRNL AUTH 2 C.M.JOHNSON,T.J.RUTHERFORD,A.R.FERSHT JRNL TITL ULTRA-FAST BARRIER-LIMITED FOLDING IN THE PERIPHERAL JRNL TITL 2 SUBUNIT-BINDING DOMAIN FAMILY. JRNL REF J.MOL.BIOL. V. 353 427 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16168437 JRNL DOI 10.1016/J.JMB.2005.08.031 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 1W4I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1290020567. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 3MM SAMPLE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG, CNS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 21 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO VIOLATION > 0.25 REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 127 -168.54 -105.38 REMARK 500 1 VAL A 129 -168.72 44.94 REMARK 500 1 PRO A 154 98.91 -31.93 REMARK 500 1 ALA A 171 93.03 -168.02 REMARK 500 1 ALA A 173 75.59 -156.66 REMARK 500 1 THR A 174 48.13 -95.11 REMARK 500 1 ALA A 175 -62.26 -177.02 REMARK 500 1 LYS A 181 -64.81 -125.10 REMARK 500 1 GLU A 184 -57.28 -128.28 REMARK 500 2 PRO A 154 95.90 -31.09 REMARK 500 2 ALA A 171 96.21 -177.81 REMARK 500 2 THR A 174 -39.26 -162.19 REMARK 500 2 ALA A 175 149.55 73.52 REMARK 500 2 ALA A 177 74.33 61.46 REMARK 500 2 ALA A 179 85.84 -169.97 REMARK 500 3 ARG A 127 -40.43 -176.36 REMARK 500 3 VAL A 129 162.92 57.31 REMARK 500 3 PRO A 154 100.74 -32.53 REMARK 500 3 ALA A 171 -63.61 -146.15 REMARK 500 3 LYS A 172 -18.23 74.95 REMARK 500 3 ALA A 173 -43.11 -167.86 REMARK 500 3 THR A 174 -78.21 -157.30 REMARK 500 3 PRO A 180 -171.51 -67.02 REMARK 500 3 GLU A 184 -75.70 -127.74 REMARK 500 3 LYS A 185 159.65 60.91 REMARK 500 4 THR A 152 38.87 -143.46 REMARK 500 4 PRO A 154 96.58 -31.75 REMARK 500 4 PRO A 180 170.64 -48.99 REMARK 500 4 GLU A 184 -178.14 60.49 REMARK 500 5 PRO A 154 98.01 -31.64 REMARK 500 5 ALA A 171 92.37 -160.31 REMARK 500 5 ALA A 173 100.31 -170.54 REMARK 500 5 ALA A 175 127.09 62.85 REMARK 500 5 PRO A 176 106.52 -54.06 REMARK 500 5 ALA A 179 76.05 -168.96 REMARK 500 5 PRO A 180 -167.11 -55.95 REMARK 500 5 ALA A 182 179.30 58.23 REMARK 500 6 GLU A 128 159.70 61.17 REMARK 500 6 ALA A 130 120.65 65.63 REMARK 500 6 PRO A 154 108.80 -38.11 REMARK 500 6 ALA A 171 94.27 -175.22 REMARK 500 6 ALA A 173 52.99 -166.79 REMARK 500 6 PRO A 178 177.24 -54.65 REMARK 500 6 ALA A 179 86.12 58.97 REMARK 500 6 ALA A 182 30.30 -99.70 REMARK 500 6 GLU A 184 -75.52 -81.33 REMARK 500 7 GLU A 128 167.83 61.37 REMARK 500 7 VAL A 129 -46.60 -164.94 REMARK 500 7 ALA A 130 118.11 62.97 REMARK 500 7 PRO A 154 97.13 -31.15 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W4E RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS REMARK 900 RELATED ID: 1W4F RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND REMARK 900 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE REMARK 900 TRANSITIONS REMARK 900 RELATED ID: 1W4H RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT FROM MESOPHILIC, THERMOPHILIC AND REMARK 900 HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO-STATE REMARK 900 TRANSITIONS REMARK 900 RELATED ID: 1W4J RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS REMARK 900 RELATED ID: 1W4K RELATED DB: PDB REMARK 900 PERIPHERAL-SUBUNIT BINDING DOMAINS FROM MESOPHILIC, THERMOPHILIC, REMARK 900 AND HYPERTHERMOPHILIC BACTERIA FOLD BY ULTRAFAST, APPARENTLY TWO- REMARK 900 STATE TRANSITIONS DBREF 1W4I A 125 126 PDB 1W4I 1W4I 125 126 DBREF 1W4I A 127 186 UNP Q8ZUR6 Q8ZUR6 93 152 SEQRES 1 A 62 GLY SER ARG GLU VAL ALA ALA MET PRO ALA ALA ARG ARG SEQRES 2 A 62 LEU ALA LYS GLU LEU GLY ILE ASP LEU SER LYS VAL LYS SEQRES 3 A 62 GLY THR GLY PRO GLY GLY VAL ILE THR VAL GLU ASP VAL SEQRES 4 A 62 LYS ARG TYR ALA GLU GLU THR ALA LYS ALA THR ALA PRO SEQRES 5 A 62 ALA PRO ALA PRO LYS ALA VAL GLU LYS ALA HELIX 1 1 MET A 132 GLY A 143 1 12 HELIX 2 2 ASP A 145 VAL A 149 5 5 HELIX 3 3 THR A 159 LYS A 172 1 14 SHEET 1 AA 2 ALA A 130 ALA A 131 0 SHEET 2 AA 2 VAL A 157 ILE A 158 1 N ILE A 158 O ALA A 130 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1