HEADER OXIDOREDUCTASE 23-AUG-04 1W6S TITLE THE HIGH RESOLUTION STRUCTURE OF METHANOL DEHYDROGENASE FROM TITLE 2 METHYLOBACTERIUM EXTORQUENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHANOL DEHYDROGENASE SUBUNIT 1; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: MDH LARGE SUBUNIT, MEDH; COMPND 5 EC: 1.1.99.8; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: METHANOL DEHYDROGENASE SUBUNIT 2; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: MDH SMALL SUBUNIT, MEDH; COMPND 10 EC: 1.1.99.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACTERIUM EXTORQUENS; SOURCE 3 ORGANISM_TAXID: 408; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: METHYLOBACTERIUM EXTORQUENS; SOURCE 6 ORGANISM_TAXID: 408 KEYWDS ANISOTROPIC, ELECTRON TRANSFER, OXIDOREDUCTASE, CALCIUM-BINDING, KEYWDS 2 METHANOL UTILIZATION, PQQ EXPDTA X-RAY DIFFRACTION AUTHOR P.A.WILLIAMS,L.COATES,F.MOHAMMED,R.GILL,P.T.ERSKINE,S.P.WOOD, AUTHOR 2 C.ANTHONY,J.B.COOPER REVDAT 5 13-NOV-24 1W6S 1 LINK REVDAT 4 22-MAY-19 1W6S 1 REMARK REVDAT 3 24-FEB-09 1W6S 1 VERSN REVDAT 2 11-MAY-05 1W6S 1 JRNL REMARK REVDAT 1 21-DEC-04 1W6S 0 JRNL AUTH P.A.WILLIAMS,L.COATES,F.MOHAMMED,R.GILL,P.T.ERSKINE, JRNL AUTH 2 S.P.WOOD,C.ANTHONY,J.B.COOPER JRNL TITL THE ATOMIC RESOLUTION STRUCTURE OF METHANOL DEHYDROGENASE JRNL TITL 2 FROM METHYLOBACTERIUM EXTORQUENS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 75 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15608378 JRNL DOI 10.1107/S0907444904026964 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.153 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.158 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 18605 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 353944 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.136 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.141 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 11913 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 228094 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10340 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 1437 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 11797. REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 10618 REMARK 3 NUMBER OF RESTRAINTS : 12925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 ANGLE DISTANCES (A) : 0.046 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.032 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.074 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.067 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.127 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.005 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.042 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.068 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1W6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1290020815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 150.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 373341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CATALYTIC ACTIVITY: A PRIMARY ALCOHOL + ACCEPTOR = AN ALDEHYDE + REMARK 400 REDUCED ACCEPTOR. REMARK 400 COFACTOR: BINDS 1 PQQ GROUP AND 1 CALCIUM ION PER SUBUNIT. PQQ IS REMARK 400 INSERTED BETWEEN DISULFIDE CYS130-CYS131 AND THE INDOLE RING OF REMARK 400 TRP-270. REMARK 400 SUBUNIT: HETEROTETRAMER COMPOSED OF 2 ALPHA AND 2 BETA SUBUNITS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 597 REMARK 465 ALA A 598 REMARK 465 LYS A 599 REMARK 465 ASN B 1074 REMARK 465 ALA C 2598 REMARK 465 LYS C 2599 REMARK 465 ASN D 3074 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 LYS A 595 CG CD CE NZ REMARK 470 SER A 596 CA C O CB OG REMARK 470 LYS B1035 CG CD CE NZ REMARK 470 GLU B1049 CG CD OE1 OE2 REMARK 470 ALA B1073 CA C O CB REMARK 470 LYS C2093 CG CD CE NZ REMARK 470 LYS C2119 CG CD CE NZ REMARK 470 LYS C2205 CG CD CE NZ REMARK 470 LYS C2321 CG CD CE NZ REMARK 470 LYS C2426 CG CD CE NZ REMARK 470 LYS C2595 CG CD CE NZ REMARK 470 ALA C2597 CA C O CB REMARK 470 LYS D3045 CG CD CE NZ REMARK 470 LYS D3052 CG CD CE NZ REMARK 470 GLU D3056 CG CD OE1 OE2 REMARK 470 LYS D3059 CG CD CE NZ REMARK 470 LYS D3060 CG CD CE NZ REMARK 470 LYS D3063 CG CD CE NZ REMARK 470 ALA D3073 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP C2117 CB ASP C2117 CG 0.365 REMARK 500 ASP C2117 CG ASP C2117 OD1 -0.141 REMARK 500 ASP C2117 CG ASP C2117 OD2 0.478 REMARK 500 LYS C2364 CE LYS C2364 NZ 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 22 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP A 88 CA - CB - CG ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 99 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 109 CG - CD - NE ANGL. DEV. = -14.0 DEGREES REMARK 500 ASP A 167 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 181 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ILE A 215 CG1 - CB - CG2 ANGL. DEV. = -22.5 DEGREES REMARK 500 ILE A 215 CB - CG1 - CD1 ANGL. DEV. = -36.7 DEGREES REMARK 500 TYR A 220 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 353 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 TRP A 418 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 446 CD - NE - CZ ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 446 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 446 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 GLN A 447 OE1 - CD - NE2 ANGL. DEV. = -21.7 DEGREES REMARK 500 GLN A 447 CG - CD - NE2 ANGL. DEV. = 19.5 DEGREES REMARK 500 TRP A 467 CA - CB - CG ANGL. DEV. = 12.2 DEGREES REMARK 500 TYR A 534 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B1054 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ASP C2012 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP C2022 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG C2099 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP C2105 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG C2109 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG C2109 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP C2117 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP C2117 N - CA - CB ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP C2117 CB - CG - OD1 ANGL. DEV. = 15.9 DEGREES REMARK 500 ASP C2117 CB - CG - OD2 ANGL. DEV. = -36.5 DEGREES REMARK 500 ARG C2181 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP C2212 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 TYR C2220 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG C2270 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP C2286 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG C2340 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 LYS C2364 CD - CE - NZ ANGL. DEV. = 17.0 DEGREES REMARK 500 ASP C2384 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP C2384 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP C2384 CB - CG - OD2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG C2404 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP C2418 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG C2472 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG C2499 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TYR C2523 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP C2551 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP C2581 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG D3050 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 19 -47.31 78.16 REMARK 500 LEU A 51 -158.21 -105.23 REMARK 500 ASN A 52 176.13 66.22 REMARK 500 PRO A 72 30.14 -85.61 REMARK 500 ASP A 82 68.55 -159.76 REMARK 500 CYS A 104 40.90 -146.28 REMARK 500 ASP A 105 168.13 86.19 REMARK 500 LEU A 106 47.21 -91.01 REMARK 500 LYS A 166 -131.39 50.33 REMARK 500 GLN A 222 -104.68 -132.85 REMARK 500 ASN A 266 99.44 -69.05 REMARK 500 ASN A 394 -143.15 -123.28 REMARK 500 VAL A 432 -71.17 -94.93 REMARK 500 ASP A 485 33.95 72.42 REMARK 500 ALA A 550 -30.80 -132.56 REMARK 500 LYS A 595 -31.71 -145.74 REMARK 500 LYS C2019 -50.73 77.38 REMARK 500 LEU C2051 -155.50 -103.71 REMARK 500 ASN C2052 175.31 67.09 REMARK 500 PRO C2072 32.67 -84.52 REMARK 500 ASP C2082 67.67 -155.65 REMARK 500 CYS C2104 41.91 -140.67 REMARK 500 ASP C2105 163.71 83.92 REMARK 500 LEU C2106 47.16 -87.40 REMARK 500 ASP C2117 -116.38 -127.55 REMARK 500 LYS C2119 -14.46 145.06 REMARK 500 ASP C2130 2.61 -69.65 REMARK 500 LYS C2166 -127.32 47.72 REMARK 500 GLN C2222 -113.73 -129.28 REMARK 500 TRP C2276 45.42 -109.93 REMARK 500 ASN C2394 -143.30 -124.06 REMARK 500 VAL C2432 -71.07 -97.64 REMARK 500 ASP C2485 32.82 70.51 REMARK 500 ASP C2581 19.24 56.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 103 CYS A 104 -149.24 REMARK 500 CYS C 2103 CYS C 2104 -149.84 REMARK 500 TYR C 2495 LEU C 2496 149.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP C2117 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2002 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH C4064 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH C4086 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1599 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 GLU A 177 OE1 49.6 REMARK 620 3 ASN A 261 OD1 121.0 79.0 REMARK 620 4 PQQ A1596 O7A 80.1 91.0 72.8 REMARK 620 5 PQQ A1596 O5 113.2 132.6 123.7 133.3 REMARK 620 6 PQQ A1596 N6 85.5 133.8 126.9 67.5 69.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C3599 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C2177 OE2 REMARK 620 2 GLU C2177 OE1 50.7 REMARK 620 3 ASN C2261 OD1 122.1 80.5 REMARK 620 4 PQQ C3597 O5 114.9 131.8 121.2 REMARK 620 5 PQQ C3597 N6 82.0 132.2 130.0 69.2 REMARK 620 6 PQQ C3597 O7A 78.4 94.4 76.4 130.6 66.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1599 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C3599 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ A1596 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ C3597 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1597 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1598 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C3598 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1H4I RELATED DB: PDB REMARK 900 METHYLOBACTERIUM EXTORQUENS METHANOL DEHYDROGENASE REMARK 900 RELATED ID: 1H4J RELATED DB: PDB REMARK 900 METHYLOBACTERIUM EXTORQUENS METHANOL DEHYDROGENASE D303E MUTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 CERTAIN RESIDUES HAVE NO DENSITY THEREFORE THESE HAVE BEEN REMARK 999 MODELLED AS ALANINES. THE MISSING ATOMS FOR THESE RESIDUES REMARK 999 ARE LISTED IN REMARK 470. DBREF 1W6S A 1 599 UNP P16027 DHM1_METEX 28 626 DBREF 1W6S B 1001 1074 UNP P14775 DHM2_METEX 23 96 DBREF 1W6S C 2001 2599 UNP P16027 DHM1_METEX 28 626 DBREF 1W6S D 3001 3074 UNP P14775 DHM2_METEX 23 96 SEQADV 1W6S LYS A 426 UNP P16027 ARG 453 CONFLICT SEQADV 1W6S LYS C 2426 UNP P16027 ARG 453 CONFLICT SEQRES 1 A 599 ASN ASP LYS LEU VAL GLU LEU SER LYS SER ASP ASP ASN SEQRES 2 A 599 TRP VAL MET PRO GLY LYS ASN TYR ASP SER ASN ASN PHE SEQRES 3 A 599 SER ASP LEU LYS GLN ILE ASN LYS GLY ASN VAL LYS GLN SEQRES 4 A 599 LEU ARG PRO ALA TRP THR PHE SER THR GLY LEU LEU ASN SEQRES 5 A 599 GLY HIS GLU GLY ALA PRO LEU VAL VAL ASP GLY LYS MET SEQRES 6 A 599 TYR ILE HIS THR SER PHE PRO ASN ASN THR PHE ALA LEU SEQRES 7 A 599 GLY LEU ASP ASP PRO GLY THR ILE LEU TRP GLN ASP LYS SEQRES 8 A 599 PRO LYS GLN ASN PRO ALA ALA ARG ALA VAL ALA CYS CYS SEQRES 9 A 599 ASP LEU VAL ASN ARG GLY LEU ALA TYR TRP PRO GLY ASP SEQRES 10 A 599 GLY LYS THR PRO ALA LEU ILE LEU LYS THR GLN LEU ASP SEQRES 11 A 599 GLY ASN VAL ALA ALA LEU ASN ALA GLU THR GLY GLU THR SEQRES 12 A 599 VAL TRP LYS VAL GLU ASN SER ASP ILE LYS VAL GLY SER SEQRES 13 A 599 THR LEU THR ILE ALA PRO TYR VAL VAL LYS ASP LYS VAL SEQRES 14 A 599 ILE ILE GLY SER SER GLY ALA GLU LEU GLY VAL ARG GLY SEQRES 15 A 599 TYR LEU THR ALA TYR ASP VAL LYS THR GLY GLU GLN VAL SEQRES 16 A 599 TRP ARG ALA TYR ALA THR GLY PRO ASP LYS ASP LEU LEU SEQRES 17 A 599 LEU ALA SER ASP PHE ASN ILE LYS ASN PRO HIS TYR GLY SEQRES 18 A 599 GLN LYS GLY LEU GLY THR GLY THR TRP GLU GLY ASP ALA SEQRES 19 A 599 TRP LYS ILE GLY GLY GLY THR ASN TRP GLY TRP TYR ALA SEQRES 20 A 599 TYR ASP PRO GLY THR ASN LEU ILE TYR PHE GLY THR GLY SEQRES 21 A 599 ASN PRO ALA PRO TRP ASN GLU THR MET ARG PRO GLY ASP SEQRES 22 A 599 ASN LYS TRP THR MET THR ILE PHE GLY ARG ASP ALA ASP SEQRES 23 A 599 THR GLY GLU ALA LYS PHE GLY TYR GLN LYS THR PRO HIS SEQRES 24 A 599 ASP GLU TRP ASP TYR ALA GLY VAL ASN VAL MET MET LEU SEQRES 25 A 599 SER GLU GLN LYS ASP LYS ASP GLY LYS ALA ARG LYS LEU SEQRES 26 A 599 LEU THR HIS PRO ASP ARG ASN GLY ILE VAL TYR THR LEU SEQRES 27 A 599 ASP ARG THR ASP GLY ALA LEU VAL SER ALA ASN LYS LEU SEQRES 28 A 599 ASP ASP THR VAL ASN VAL PHE LYS SER VAL ASP LEU LYS SEQRES 29 A 599 THR GLY GLN PRO VAL ARG ASP PRO GLU TYR GLY THR ARG SEQRES 30 A 599 MET ASP HIS LEU ALA LYS ASP ILE CYS PRO SER ALA MET SEQRES 31 A 599 GLY TYR HIS ASN GLN GLY HIS ASP SER TYR ASP PRO LYS SEQRES 32 A 599 ARG GLU LEU PHE PHE MET GLY ILE ASN HIS ILE CYS MET SEQRES 33 A 599 ASP TRP GLU PRO PHE MET LEU PRO TYR LYS ALA GLY GLN SEQRES 34 A 599 PHE PHE VAL GLY ALA THR LEU ASN MET TYR PRO GLY PRO SEQRES 35 A 599 LYS GLY ASP ARG GLN ASN TYR GLU GLY LEU GLY GLN ILE SEQRES 36 A 599 LYS ALA TYR ASN ALA ILE THR GLY ASP TYR LYS TRP GLU SEQRES 37 A 599 LYS MET GLU ARG PHE ALA VAL TRP GLY GLY THR MET ALA SEQRES 38 A 599 THR ALA GLY ASP LEU VAL PHE TYR GLY THR LEU ASP GLY SEQRES 39 A 599 TYR LEU LYS ALA ARG ASP SER ASP THR GLY ASP LEU LEU SEQRES 40 A 599 TRP LYS PHE LYS ILE PRO SER GLY ALA ILE GLY TYR PRO SEQRES 41 A 599 MET THR TYR THR HIS LYS GLY THR GLN TYR VAL ALA ILE SEQRES 42 A 599 TYR TYR GLY VAL GLY GLY TRP PRO GLY VAL GLY LEU VAL SEQRES 43 A 599 PHE ASP LEU ALA ASP PRO THR ALA GLY LEU GLY ALA VAL SEQRES 44 A 599 GLY ALA PHE LYS LYS LEU ALA ASN TYR THR GLN MET GLY SEQRES 45 A 599 GLY GLY VAL VAL VAL PHE SER LEU ASP GLY LYS GLY PRO SEQRES 46 A 599 TYR ASP ASP PRO ASN VAL GLY GLU TRP LYS SER ALA ALA SEQRES 47 A 599 LYS SEQRES 1 B 74 TYR ASP GLY THR LYS CYS LYS ALA ALA GLY ASN CYS TRP SEQRES 2 B 74 GLU PRO LYS PRO GLY PHE PRO GLU LYS ILE ALA GLY SER SEQRES 3 B 74 LYS TYR ASP PRO LYS HIS ASP PRO LYS GLU LEU ASN LYS SEQRES 4 B 74 GLN ALA ASP SER ILE LYS GLN MET GLU GLU ARG ASN LYS SEQRES 5 B 74 LYS ARG VAL GLU ASN PHE LYS LYS THR GLY LYS PHE GLU SEQRES 6 B 74 TYR ASP VAL ALA LYS ILE SER ALA ASN SEQRES 1 C 599 ASN ASP LYS LEU VAL GLU LEU SER LYS SER ASP ASP ASN SEQRES 2 C 599 TRP VAL MET PRO GLY LYS ASN TYR ASP SER ASN ASN PHE SEQRES 3 C 599 SER ASP LEU LYS GLN ILE ASN LYS GLY ASN VAL LYS GLN SEQRES 4 C 599 LEU ARG PRO ALA TRP THR PHE SER THR GLY LEU LEU ASN SEQRES 5 C 599 GLY HIS GLU GLY ALA PRO LEU VAL VAL ASP GLY LYS MET SEQRES 6 C 599 TYR ILE HIS THR SER PHE PRO ASN ASN THR PHE ALA LEU SEQRES 7 C 599 GLY LEU ASP ASP PRO GLY THR ILE LEU TRP GLN ASP LYS SEQRES 8 C 599 PRO LYS GLN ASN PRO ALA ALA ARG ALA VAL ALA CYS CYS SEQRES 9 C 599 ASP LEU VAL ASN ARG GLY LEU ALA TYR TRP PRO GLY ASP SEQRES 10 C 599 GLY LYS THR PRO ALA LEU ILE LEU LYS THR GLN LEU ASP SEQRES 11 C 599 GLY ASN VAL ALA ALA LEU ASN ALA GLU THR GLY GLU THR SEQRES 12 C 599 VAL TRP LYS VAL GLU ASN SER ASP ILE LYS VAL GLY SER SEQRES 13 C 599 THR LEU THR ILE ALA PRO TYR VAL VAL LYS ASP LYS VAL SEQRES 14 C 599 ILE ILE GLY SER SER GLY ALA GLU LEU GLY VAL ARG GLY SEQRES 15 C 599 TYR LEU THR ALA TYR ASP VAL LYS THR GLY GLU GLN VAL SEQRES 16 C 599 TRP ARG ALA TYR ALA THR GLY PRO ASP LYS ASP LEU LEU SEQRES 17 C 599 LEU ALA SER ASP PHE ASN ILE LYS ASN PRO HIS TYR GLY SEQRES 18 C 599 GLN LYS GLY LEU GLY THR GLY THR TRP GLU GLY ASP ALA SEQRES 19 C 599 TRP LYS ILE GLY GLY GLY THR ASN TRP GLY TRP TYR ALA SEQRES 20 C 599 TYR ASP PRO GLY THR ASN LEU ILE TYR PHE GLY THR GLY SEQRES 21 C 599 ASN PRO ALA PRO TRP ASN GLU THR MET ARG PRO GLY ASP SEQRES 22 C 599 ASN LYS TRP THR MET THR ILE PHE GLY ARG ASP ALA ASP SEQRES 23 C 599 THR GLY GLU ALA LYS PHE GLY TYR GLN LYS THR PRO HIS SEQRES 24 C 599 ASP GLU TRP ASP TYR ALA GLY VAL ASN VAL MET MET LEU SEQRES 25 C 599 SER GLU GLN LYS ASP LYS ASP GLY LYS ALA ARG LYS LEU SEQRES 26 C 599 LEU THR HIS PRO ASP ARG ASN GLY ILE VAL TYR THR LEU SEQRES 27 C 599 ASP ARG THR ASP GLY ALA LEU VAL SER ALA ASN LYS LEU SEQRES 28 C 599 ASP ASP THR VAL ASN VAL PHE LYS SER VAL ASP LEU LYS SEQRES 29 C 599 THR GLY GLN PRO VAL ARG ASP PRO GLU TYR GLY THR ARG SEQRES 30 C 599 MET ASP HIS LEU ALA LYS ASP ILE CYS PRO SER ALA MET SEQRES 31 C 599 GLY TYR HIS ASN GLN GLY HIS ASP SER TYR ASP PRO LYS SEQRES 32 C 599 ARG GLU LEU PHE PHE MET GLY ILE ASN HIS ILE CYS MET SEQRES 33 C 599 ASP TRP GLU PRO PHE MET LEU PRO TYR LYS ALA GLY GLN SEQRES 34 C 599 PHE PHE VAL GLY ALA THR LEU ASN MET TYR PRO GLY PRO SEQRES 35 C 599 LYS GLY ASP ARG GLN ASN TYR GLU GLY LEU GLY GLN ILE SEQRES 36 C 599 LYS ALA TYR ASN ALA ILE THR GLY ASP TYR LYS TRP GLU SEQRES 37 C 599 LYS MET GLU ARG PHE ALA VAL TRP GLY GLY THR MET ALA SEQRES 38 C 599 THR ALA GLY ASP LEU VAL PHE TYR GLY THR LEU ASP GLY SEQRES 39 C 599 TYR LEU LYS ALA ARG ASP SER ASP THR GLY ASP LEU LEU SEQRES 40 C 599 TRP LYS PHE LYS ILE PRO SER GLY ALA ILE GLY TYR PRO SEQRES 41 C 599 MET THR TYR THR HIS LYS GLY THR GLN TYR VAL ALA ILE SEQRES 42 C 599 TYR TYR GLY VAL GLY GLY TRP PRO GLY VAL GLY LEU VAL SEQRES 43 C 599 PHE ASP LEU ALA ASP PRO THR ALA GLY LEU GLY ALA VAL SEQRES 44 C 599 GLY ALA PHE LYS LYS LEU ALA ASN TYR THR GLN MET GLY SEQRES 45 C 599 GLY GLY VAL VAL VAL PHE SER LEU ASP GLY LYS GLY PRO SEQRES 46 C 599 TYR ASP ASP PRO ASN VAL GLY GLU TRP LYS SER ALA ALA SEQRES 47 C 599 LYS SEQRES 1 D 74 TYR ASP GLY THR LYS CYS LYS ALA ALA GLY ASN CYS TRP SEQRES 2 D 74 GLU PRO LYS PRO GLY PHE PRO GLU LYS ILE ALA GLY SER SEQRES 3 D 74 LYS TYR ASP PRO LYS HIS ASP PRO LYS GLU LEU ASN LYS SEQRES 4 D 74 GLN ALA ASP SER ILE LYS GLN MET GLU GLU ARG ASN LYS SEQRES 5 D 74 LYS ARG VAL GLU ASN PHE LYS LYS THR GLY LYS PHE GLU SEQRES 6 D 74 TYR ASP VAL ALA LYS ILE SER ALA ASN HET PQQ A1596 24 HET GOL A1597 6 HET GOL A1598 6 HET CA A1599 1 HET PQQ C3597 24 HET GOL C3598 6 HET CA C3599 1 HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 PQQ 2(C14 H6 N2 O8) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 8 CA 2(CA 2+) FORMUL 12 HOH *1437(H2 O) HELIX 1 1 ASN A 1 LYS A 9 1 9 HELIX 2 2 ASN A 36 LYS A 38 5 3 HELIX 3 3 ASN A 95 ALA A 102 5 8 HELIX 4 4 ASP A 151 GLY A 155 5 5 HELIX 5 5 GLY A 175 GLY A 179 5 5 HELIX 6 6 PRO A 203 LEU A 208 1 6 HELIX 7 7 ASN A 217 GLY A 221 5 5 HELIX 8 8 GLY A 224 THR A 229 1 6 HELIX 9 9 ASP A 233 GLY A 238 5 6 HELIX 10 10 ASN A 266 ARG A 270 5 5 HELIX 11 11 PRO A 372 GLY A 375 5 4 HELIX 12 12 GLY A 542 ASP A 548 1 7 HELIX 13 13 ALA A 554 LEU A 556 5 3 HELIX 14 14 GLY A 557 PHE A 562 1 6 HELIX 15 15 LYS A 564 TYR A 568 5 5 HELIX 16 16 ASP B 1033 ASN B 1038 1 6 HELIX 17 17 ASN B 1038 GLY B 1062 1 25 HELIX 18 18 ASP B 1067 ILE B 1071 5 5 HELIX 19 19 ASN C 2001 LYS C 2009 1 9 HELIX 20 20 ASN C 2036 LYS C 2038 5 3 HELIX 21 21 ASN C 2095 ALA C 2102 5 8 HELIX 22 22 ASP C 2151 GLY C 2155 5 5 HELIX 23 23 GLY C 2175 GLY C 2179 5 5 HELIX 24 24 PRO C 2203 LEU C 2208 1 6 HELIX 25 25 ASN C 2217 GLY C 2221 5 5 HELIX 26 26 GLY C 2224 THR C 2229 1 6 HELIX 27 27 GLU C 2231 GLY C 2238 5 8 HELIX 28 28 ASN C 2266 ARG C 2270 5 5 HELIX 29 29 PRO C 2372 GLY C 2375 5 4 HELIX 30 30 GLY C 2539 PRO C 2541 5 3 HELIX 31 31 GLY C 2542 PHE C 2547 1 6 HELIX 32 32 ALA C 2554 LEU C 2556 5 3 HELIX 33 33 GLY C 2557 PHE C 2562 1 6 HELIX 34 34 LYS C 2564 TYR C 2568 5 5 HELIX 35 35 ASP D 3033 ASN D 3038 1 6 HELIX 36 36 ASN D 3038 GLY D 3062 1 25 HELIX 37 37 ASP D 3067 ILE D 3071 5 5 SHEET 1 AA 5 PHE A 26 SER A 27 0 SHEET 2 AA 5 MET A 480 THR A 482 1 O ALA A 481 N SER A 27 SHEET 3 AA 5 LEU A 486 GLY A 490 -1 O LEU A 486 N THR A 482 SHEET 4 AA 5 TYR A 495 ASP A 500 -1 O LYS A 497 N TYR A 489 SHEET 5 AA 5 LEU A 506 LYS A 511 -1 N LEU A 507 O ALA A 498 SHEET 1 AB 4 LEU A 40 SER A 47 0 SHEET 2 AB 4 GLY A 574 LEU A 580 -1 O VAL A 575 N PHE A 46 SHEET 3 AB 4 THR A 528 TYR A 535 -1 O VAL A 531 N PHE A 578 SHEET 4 AB 4 MET A 521 HIS A 525 -1 O MET A 521 N ALA A 532 SHEET 1 AC 4 LEU A 59 VAL A 61 0 SHEET 2 AC 4 LYS A 64 HIS A 68 -1 O LYS A 64 N VAL A 61 SHEET 3 AC 4 THR A 75 GLY A 79 -1 O PHE A 76 N ILE A 67 SHEET 4 AC 4 ILE A 86 ASP A 90 -1 N LEU A 87 O ALA A 77 SHEET 1 AD 4 ALA A 112 TRP A 114 0 SHEET 2 AD 4 LEU A 123 THR A 127 -1 O LEU A 123 N TRP A 114 SHEET 3 AD 4 ASN A 132 ASN A 137 -1 O ALA A 134 N LYS A 126 SHEET 4 AD 4 THR A 143 GLU A 148 -1 N VAL A 144 O ALA A 135 SHEET 1 AE 4 TYR A 163 VAL A 165 0 SHEET 2 AE 4 LYS A 168 ILE A 171 -1 O LYS A 168 N VAL A 165 SHEET 3 AE 4 TYR A 183 ASP A 188 -1 O THR A 185 N ILE A 171 SHEET 4 AE 4 GLN A 194 TYR A 199 -1 N VAL A 195 O ALA A 186 SHEET 1 AF 4 ALA A 247 TYR A 248 0 SHEET 2 AF 4 LEU A 254 GLY A 258 -1 O TYR A 256 N ALA A 247 SHEET 3 AF 4 THR A 279 ASP A 284 -1 O PHE A 281 N PHE A 257 SHEET 4 AF 4 ALA A 290 GLN A 295 -1 N LYS A 291 O GLY A 282 SHEET 1 AG 4 MET A 311 LYS A 316 0 SHEET 2 AG 4 ALA A 322 PRO A 329 -1 O ARG A 323 N GLN A 315 SHEET 3 AG 4 ILE A 334 ASP A 339 -1 O TYR A 336 N HIS A 328 SHEET 4 AG 4 LEU A 345 LYS A 350 -1 N VAL A 346 O THR A 337 SHEET 1 AH 2 PHE A 358 VAL A 361 0 SHEET 2 AH 2 PRO A 368 ARG A 370 -1 O VAL A 369 N LYS A 359 SHEET 1 AI 3 ALA A 382 ILE A 385 0 SHEET 2 AI 3 ILE A 414 PRO A 420 -1 O MET A 416 N ILE A 385 SHEET 3 AI 3 ALA A 434 PRO A 440 -1 O THR A 435 N GLU A 419 SHEET 1 AJ 4 SER A 399 ASP A 401 0 SHEET 2 AJ 4 LEU A 406 ASN A 412 -1 O LEU A 406 N ASP A 401 SHEET 3 AJ 4 GLY A 453 TYR A 458 -1 O GLN A 454 N ILE A 411 SHEET 4 AJ 4 TYR A 465 GLU A 471 -1 N LYS A 466 O ALA A 457 SHEET 1 CA 5 PHE C2026 SER C2027 0 SHEET 2 CA 5 MET C2480 THR C2482 1 O ALA C2481 N SER C2027 SHEET 3 CA 5 LEU C2486 GLY C2490 -1 O LEU C2486 N THR C2482 SHEET 4 CA 5 TYR C2495 ASP C2500 -1 O LYS C2497 N TYR C2489 SHEET 5 CA 5 LEU C2506 LYS C2511 -1 N LEU C2507 O ALA C2498 SHEET 1 CB 4 LEU C2040 SER C2047 0 SHEET 2 CB 4 GLY C2574 LEU C2580 -1 O VAL C2575 N PHE C2046 SHEET 3 CB 4 THR C2528 TYR C2535 -1 O VAL C2531 N PHE C2578 SHEET 4 CB 4 MET C2521 HIS C2525 -1 O MET C2521 N ALA C2532 SHEET 1 CC 4 LEU C2059 VAL C2061 0 SHEET 2 CC 4 LYS C2064 HIS C2068 -1 O LYS C2064 N VAL C2061 SHEET 3 CC 4 THR C2075 GLY C2079 -1 O PHE C2076 N ILE C2067 SHEET 4 CC 4 ILE C2086 ASP C2090 -1 N LEU C2087 O ALA C2077 SHEET 1 CD 4 ALA C2112 TRP C2114 0 SHEET 2 CD 4 LEU C2123 THR C2127 -1 O LEU C2123 N TRP C2114 SHEET 3 CD 4 ASN C2132 ASN C2137 -1 O ALA C2134 N LYS C2126 SHEET 4 CD 4 THR C2143 GLU C2148 -1 N VAL C2144 O ALA C2135 SHEET 1 CE 4 TYR C2163 VAL C2165 0 SHEET 2 CE 4 LYS C2168 ILE C2171 -1 O LYS C2168 N VAL C2165 SHEET 3 CE 4 TYR C2183 ASP C2188 -1 O THR C2185 N ILE C2171 SHEET 4 CE 4 GLN C2194 TYR C2199 -1 N VAL C2195 O ALA C2186 SHEET 1 CF 4 ALA C2247 TYR C2248 0 SHEET 2 CF 4 LEU C2254 GLY C2258 -1 O TYR C2256 N ALA C2247 SHEET 3 CF 4 THR C2279 ASP C2284 -1 O PHE C2281 N PHE C2257 SHEET 4 CF 4 ALA C2290 GLN C2295 -1 N LYS C2291 O GLY C2282 SHEET 1 CG 4 MET C2311 LYS C2316 0 SHEET 2 CG 4 ALA C2322 PRO C2329 -1 O ARG C2323 N GLN C2315 SHEET 3 CG 4 ILE C2334 ASP C2339 -1 O TYR C2336 N HIS C2328 SHEET 4 CG 4 LEU C2345 LYS C2350 -1 N VAL C2346 O THR C2337 SHEET 1 CH 2 PHE C2358 VAL C2361 0 SHEET 2 CH 2 PRO C2368 ARG C2370 -1 O VAL C2369 N LYS C2359 SHEET 1 CI 3 ALA C2382 ILE C2385 0 SHEET 2 CI 3 ILE C2414 PRO C2420 -1 O MET C2416 N ILE C2385 SHEET 3 CI 3 ALA C2434 PRO C2440 -1 O THR C2435 N GLU C2419 SHEET 1 CJ 4 SER C2399 ASP C2401 0 SHEET 2 CJ 4 LEU C2406 ASN C2412 -1 O LEU C2406 N ASP C2401 SHEET 3 CJ 4 GLY C2453 TYR C2458 -1 O GLN C2454 N ILE C2411 SHEET 4 CJ 4 TYR C2465 GLU C2471 -1 N LYS C2466 O ALA C2457 SSBOND 1 CYS A 103 CYS A 104 1555 1555 2.13 SSBOND 2 CYS A 386 CYS A 415 1555 1555 2.10 SSBOND 3 CYS B 1006 CYS B 1012 1555 1555 2.05 SSBOND 4 CYS C 2103 CYS C 2104 1555 1555 2.12 SSBOND 5 CYS C 2386 CYS C 2415 1555 1555 2.09 SSBOND 6 CYS D 3006 CYS D 3012 1555 1555 2.03 LINK OE2 GLU A 177 CA CA A1599 1555 1555 2.40 LINK OE1 GLU A 177 CA CA A1599 1555 1555 2.79 LINK OD1 ASN A 261 CA CA A1599 1555 1555 3.15 LINK O7A PQQ A1596 CA CA A1599 1555 1555 2.44 LINK O5 PQQ A1596 CA CA A1599 1555 1555 2.25 LINK N6 PQQ A1596 CA CA A1599 1555 1555 2.31 LINK OE2 GLU C2177 CA CA C3599 1555 1555 2.37 LINK OE1 GLU C2177 CA CA C3599 1555 1555 2.77 LINK OD1 ASN C2261 CA CA C3599 1555 1555 3.11 LINK O5 PQQ C3597 CA CA C3599 1555 1555 2.33 LINK N6 PQQ C3597 CA CA C3599 1555 1555 2.39 LINK O7A PQQ C3597 CA CA C3599 1555 1555 2.54 CISPEP 1 PHE A 71 PRO A 72 0 3.84 CISPEP 2 ALA A 263 PRO A 264 0 -1.31 CISPEP 3 LYS A 275 TRP A 276 0 3.31 CISPEP 4 CYS A 386 PRO A 387 0 1.15 CISPEP 5 PHE C 2071 PRO C 2072 0 3.06 CISPEP 6 ALA C 2263 PRO C 2264 0 -3.54 CISPEP 7 LYS C 2275 TRP C 2276 0 2.46 CISPEP 8 CYS C 2386 PRO C 2387 0 -1.63 SITE 1 AC1 4 GLU A 177 ASN A 261 ASP A 303 PQQ A1596 SITE 1 AC2 4 GLU C2177 ASN C2261 ASP C2303 PQQ C3597 SITE 1 AC3 20 GLU A 55 CYS A 104 VAL A 107 ARG A 109 SITE 2 AC3 20 THR A 159 SER A 174 GLY A 175 ALA A 176 SITE 3 AC3 20 GLU A 177 THR A 241 TRP A 243 ASN A 261 SITE 4 AC3 20 ARG A 331 ASN A 394 TRP A 476 GLY A 539 SITE 5 AC3 20 TRP A 540 CA A1599 HOH A2329 HOH A2602 SITE 1 AC4 20 GLU C2055 CYS C2104 VAL C2107 ARG C2109 SITE 2 AC4 20 THR C2159 SER C2174 GLY C2175 ALA C2176 SITE 3 AC4 20 GLU C2177 THR C2241 TRP C2243 ASN C2261 SITE 4 AC4 20 ARG C2331 ASN C2394 TRP C2476 GLY C2539 SITE 5 AC4 20 TRP C2540 CA C3599 HOH C4356 HOH C4609 SITE 1 AC5 10 ALA A 43 GLY A 584 PRO A 585 TYR A 586 SITE 2 AC5 10 ASP A 587 HOH A2603 HOH A2604 ARG C2041 SITE 3 AC5 10 TRP C2508 LYS C2509 SITE 1 AC6 8 HIS A 525 THR A 528 TYR A 530 LYS A 583 SITE 2 AC6 8 PRO A 585 HOH A2132 HOH A2135 HOH A2605 SITE 1 AC7 10 TRP A 508 LYS A 509 HOH A2095 ALA C2043 SITE 2 AC7 10 GLY C2582 GLY C2584 PRO C2585 TYR C2586 SITE 3 AC7 10 ASP C2587 HOH C4610 CRYST1 62.900 73.620 88.080 86.09 104.11 109.68 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015898 0.005686 0.004083 0.00000 SCALE2 0.000000 0.014426 0.000220 0.00000 SCALE3 0.000000 0.000000 0.011708 0.00000