HEADER SUGAR BINDING PROTEIN 21-SEP-04 1W8H TITLE STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED WITH TITLE 2 LEWISA TRISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOMONAS AERUGINOSA LECTIN II; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PA-IIL; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: EACH MONOMER CONTAINS TWO CLOSE CALCIUM CATIONS THAT COMPND 7 MEDIATE THE BINDING OF THE SACCHARIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET25PA2L KEYWDS SUGAR BINDING PROTEIN, LECTIN, SUGAR, LEWIS A, CYSTIC FIBROSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.PERRET,C.SABIN,C.DUMON,M.BUDOVA,C.GAUTIER,O.GALANINA,S.ILIA, AUTHOR 2 N.BOVIN,M.NICAISE,M.DESMADRIL,N.GILBOA-GARBER,M.WIMMEROVA, AUTHOR 3 E.P.MITCHELL,A.IMBERTY REVDAT 6 14-FEB-24 1W8H 1 HETSYN REVDAT 5 29-JUL-20 1W8H 1 COMPND REMARK HETNAM SHEET REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 30-JAN-13 1W8H 1 HEADER COMPND SOURCE KEYWDS REVDAT 4 2 1 AUTHOR JRNL REMARK VERSN REVDAT 4 3 1 HETNAM HETSYN LINK SITE REVDAT 4 4 1 HETATM CONECT MASTER REVDAT 3 24-FEB-09 1W8H 1 VERSN REVDAT 2 14-AUG-06 1W8H 1 JRNL REVDAT 1 31-MAR-05 1W8H 0 JRNL AUTH S.PERRET,C.SABIN,C.DUMON,M.POKORNA,C.GAUTIER,O.GALANINA, JRNL AUTH 2 S.ILIA,N.BOVIN,M.NICAISE,M.DESMADRIL,N.GILBOA-GARBER, JRNL AUTH 3 M.WIMMEROVA,E.P.MITCHELL,A.IMBERTY JRNL TITL STRUCTURAL BASIS FOR THE INTERACTION BETWEEN HUMAN MILK JRNL TITL 2 OLIGOSACCHARIDES AND THE BACTERIAL LECTIN PA-IIL OF JRNL TITL 3 PSEUDOMONAS AERUGINOSA. JRNL REF BIOCHEM.J. V. 389 325 2005 JRNL REFN ISSN 0264-6021 JRNL PMID 15790314 JRNL DOI 10.1042/BJ20050079 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.MITCHELL,C.HOULES,D.SUDAKEVITZ,M.WIMMEROVA,C.GAUTIER, REMARK 1 AUTH 2 S.PEREZ,A.WU,N.GILBOA-GARBER,A.IMBERTY REMARK 1 TITL STRUCTURAL BASIS FOR OLIGOSACCHARIDE-MEDIATED ADHESION OF REMARK 1 TITL 2 PSEUDOMONAS AERUGINOSA IN THE LUNGS OF CYSTIC FIBROSIS REMARK 1 TITL 3 PATIENTS. REMARK 1 REF NAT.STRUCT.BIOL. V. 12 918 2002 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 12415289 REMARK 1 DOI 10.1038/NSB865 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 34037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1173 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 240 REMARK 3 SOLVENT ATOMS : 438 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -0.33000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.959 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3653 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3148 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5022 ; 1.458 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7306 ; 0.829 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 6.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;44.786 ;27.219 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;10.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 666 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4035 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 620 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 644 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2995 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2117 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 301 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.189 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2340 ; 0.879 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3724 ; 1.362 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1423 ; 2.242 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1298 ; 3.311 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1W8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1290021061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL DIAMOND REMARK 200 OPTICS : MULTILAYER MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34811 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 26.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 200 DATA REDUNDANCY : 4.060 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GZT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.91200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 11070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET C 0 REMARK 465 MET D 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 72 NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2033 O HOH C 2083 1.96 REMARK 500 O HOH A 2025 O HOH A 2051 1.98 REMARK 500 O5 GAL E 2 O3 NDG E 3 2.09 REMARK 500 O6 NDG E 3 O HOH A 2125 2.12 REMARK 500 OD1 ASN D 33 O HOH D 2027 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 104 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 -44.63 -144.69 REMARK 500 ASN B 33 62.60 26.46 REMARK 500 THR B 84 38.76 36.97 REMARK 500 GLU B 86 -48.25 -146.98 REMARK 500 THR C 84 40.52 33.70 REMARK 500 GLU C 86 -48.56 -140.71 REMARK 500 ASN D 47 30.11 70.78 REMARK 500 GLU D 86 -47.34 -147.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 21 O REMARK 620 2 ASP A 101 OD1 146.2 REMARK 620 3 ASP A 101 OD2 152.1 45.7 REMARK 620 4 ASN A 103 OD1 86.8 72.4 74.3 REMARK 620 5 ASP A 104 OD1 81.6 71.6 117.3 88.3 REMARK 620 6 GLY D 114 O 78.1 125.8 80.8 87.5 159.5 REMARK 620 7 FUC E 4 O3 132.2 63.3 74.0 135.8 79.6 116.7 REMARK 620 8 FUC E 4 O4 77.2 127.5 115.4 159.7 101.4 77.2 64.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 95 OE1 REMARK 620 2 GLU A 95 OE2 54.4 REMARK 620 3 ASP A 99 OD1 84.7 81.5 REMARK 620 4 ASP A 101 OD1 80.6 133.3 82.7 REMARK 620 5 ASP A 104 OD1 119.6 130.2 146.9 80.0 REMARK 620 6 ASP A 104 OD2 82.3 81.9 162.8 106.0 50.2 REMARK 620 7 FUC E 4 O2 140.5 86.6 96.2 138.8 79.2 86.9 REMARK 620 8 FUC E 4 O3 148.2 142.8 75.6 72.4 72.4 120.8 67.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 114 O REMARK 620 2 ASN D 21 O 80.5 REMARK 620 3 ASP D 101 OD1 122.4 145.1 REMARK 620 4 ASP D 101 OD2 78.4 152.4 45.2 REMARK 620 5 ASN D 103 OD1 86.1 85.2 71.9 75.8 REMARK 620 6 ASP D 104 OD1 163.0 83.0 70.8 116.0 88.7 REMARK 620 7 FUC H 3 O3 115.9 134.1 63.6 72.0 135.4 78.7 REMARK 620 8 FUC H 3 O4 78.4 76.8 129.9 115.6 157.9 101.5 66.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 21 O REMARK 620 2 ASP B 101 OD1 143.6 REMARK 620 3 ASP B 101 OD2 155.1 44.7 REMARK 620 4 ASN B 103 OD1 85.5 71.3 76.9 REMARK 620 5 ASP B 104 OD1 82.1 68.6 113.3 85.2 REMARK 620 6 GLY C 114 O 81.5 123.5 80.2 87.3 162.5 REMARK 620 7 FUC F 3 O3 131.5 63.1 72.7 134.3 76.7 119.3 REMARK 620 8 FUC F 3 O4 75.1 131.0 117.4 157.7 102.7 79.1 68.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 95 OE1 REMARK 620 2 GLU B 95 OE2 52.8 REMARK 620 3 ASP B 99 OD1 87.4 84.0 REMARK 620 4 ASP B 101 OD1 79.1 131.0 85.1 REMARK 620 5 ASP B 104 OD1 118.1 128.7 146.1 78.9 REMARK 620 6 ASP B 104 OD2 80.6 78.4 162.4 105.1 51.4 REMARK 620 7 FUC F 3 O3 148.9 142.6 72.1 76.1 75.1 123.9 REMARK 620 8 FUC F 3 O2 139.1 86.9 96.0 141.8 79.4 84.9 68.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 114 O REMARK 620 2 ASN C 21 O 81.7 REMARK 620 3 ASP C 101 OD1 124.2 144.3 REMARK 620 4 ASP C 101 OD2 79.5 154.9 45.6 REMARK 620 5 ASN C 103 OD1 87.6 83.9 74.2 78.8 REMARK 620 6 ASP C 104 OD1 161.5 80.4 70.3 115.9 85.7 REMARK 620 7 FUC G 3 O3 118.1 130.3 63.2 73.9 137.3 77.8 REMARK 620 8 FUC G 3 O4 78.1 76.0 129.1 115.8 156.7 102.2 66.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 95 OE1 REMARK 620 2 GLU C 95 OE2 53.8 REMARK 620 3 ASP C 99 OD1 87.9 83.1 REMARK 620 4 ASP C 101 OD1 82.6 135.2 86.0 REMARK 620 5 ASP C 104 OD1 118.1 127.3 147.5 79.1 REMARK 620 6 ASP C 104 OD2 80.2 79.6 162.5 104.9 49.7 REMARK 620 7 FUC G 3 O2 138.1 85.1 95.5 139.2 78.2 85.2 REMARK 620 8 FUC G 3 O3 152.2 142.1 75.3 74.4 73.0 120.5 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 208 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 95 OE1 REMARK 620 2 GLU D 95 OE2 53.2 REMARK 620 3 ASP D 99 OD1 84.0 84.4 REMARK 620 4 ASP D 101 OD1 80.6 133.4 85.0 REMARK 620 5 ASP D 104 OD1 119.7 128.3 146.6 77.0 REMARK 620 6 ASP D 104 OD2 82.3 79.0 162.7 103.1 50.7 REMARK 620 7 FUC H 3 O3 148.3 144.2 75.1 74.2 73.0 121.7 REMARK 620 8 FUC H 3 O2 139.4 86.5 98.2 140.0 79.2 85.6 68.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GZT RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) TOGETHER WITH FUCOSE REMARK 900 RELATED ID: 1OUR RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH MANNOSE REMARK 900 RELATED ID: 1OUS RELATED DB: PDB REMARK 900 LECB (PA-LII) CALCIUM-FREE REMARK 900 RELATED ID: 1OUX RELATED DB: PDB REMARK 900 LECB (PA-LII) SUGAR-FREE REMARK 900 RELATED ID: 1OVP RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FRUCTOSE REMARK 900 RELATED ID: 1OVS RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH CORE TRIMANNOSIDE REMARK 900 RELATED ID: 1OXC RELATED DB: PDB REMARK 900 LECB (PA-LII) IN COMPLEX WITH FUCOSE REMARK 900 RELATED ID: 1UZV RELATED DB: PDB REMARK 900 HIGH AFFINITY FUCOSE BINDING OF PSEUDOMONAS AERUGINOSA LECTIN II: REMARK 900 1.0 A CRYSTAL STRUCTURE OF THE COMPLEX REMARK 900 RELATED ID: 1W38 RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LACTO-N- REMARK 900 NEO-FUCOPENTAOSE V ( LNPF V) REMARK 900 RELATED ID: 1W43 RELATED DB: PDB REMARK 900 STRUCTURE OF PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED REMARK 900 WITH LEWISA TRISACCHARIDE REMARK 900 RELATED ID: 1W8F RELATED DB: PDB REMARK 900 PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL) COMPLEXED WITH LACTO-N- REMARK 900 NEO-FUCOPENTAOSE V( LNPFV) DBREF 1W8H A 0 114 UNP Q9HYN5 Q9HYN5 1 115 DBREF 1W8H B 0 114 UNP Q9HYN5 Q9HYN5 1 115 DBREF 1W8H C 0 114 UNP Q9HYN5 Q9HYN5 1 115 DBREF 1W8H D 0 114 UNP Q9HYN5 Q9HYN5 1 115 SEQRES 1 A 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 A 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 A 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 A 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 A 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 A 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 A 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 A 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 A 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 B 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 B 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 B 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 B 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 B 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 B 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 B 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 B 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 B 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 C 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 C 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 C 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 C 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 C 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 C 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 C 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 C 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 C 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY SEQRES 1 D 115 MET ALA THR GLN GLY VAL PHE THR LEU PRO ALA ASN THR SEQRES 2 D 115 ARG PHE GLY VAL THR ALA PHE ALA ASN SER SER GLY THR SEQRES 3 D 115 GLN THR VAL ASN VAL LEU VAL ASN ASN GLU THR ALA ALA SEQRES 4 D 115 THR PHE SER GLY GLN SER THR ASN ASN ALA VAL ILE GLY SEQRES 5 D 115 THR GLN VAL LEU ASN SER GLY SER SER GLY LYS VAL GLN SEQRES 6 D 115 VAL GLN VAL SER VAL ASN GLY ARG PRO SER ASP LEU VAL SEQRES 7 D 115 SER ALA GLN VAL ILE LEU THR ASN GLU LEU ASN PHE ALA SEQRES 8 D 115 LEU VAL GLY SER GLU ASP GLY THR ASP ASN ASP TYR ASN SEQRES 9 D 115 ASP ALA VAL VAL VAL ILE ASN TRP PRO LEU GLY HET NAG E 1 15 HET GAL E 2 11 HET NDG E 3 15 HET FUC E 4 10 HET NAG F 1 15 HET NDG F 1 15 HET GAL F 2 11 HET FUC F 3 10 HET NAG G 1 15 HET NDG G 1 15 HET GAL G 2 11 HET FUC G 3 10 HET NDG H 1 15 HET NAG H 1 15 HET GAL H 2 11 HET FUC H 3 10 HET CA A 201 1 HET CA A 202 1 HET SO4 A 400 5 HET SO4 A 401 5 HET GOL A 614 6 HET CA B 203 1 HET CA B 204 1 HET CA C 205 1 HET CA C 206 1 HET GOL C 615 6 HET CA D 207 1 HET CA D 208 1 HET GOL D 616 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 5 GAL 4(C6 H12 O6) FORMUL 5 NDG 4(C8 H15 N O6) FORMUL 5 FUC 4(C6 H12 O5) FORMUL 9 CA 8(CA 2+) FORMUL 11 SO4 2(O4 S 2-) FORMUL 13 GOL 3(C3 H8 O3) FORMUL 22 HOH *438(H2 O) LINK O3 ANAG E 1 C1 GAL E 2 1555 1555 1.43 LINK O4 ANAG E 1 C1 FUC E 4 1555 1555 1.45 LINK C1 GAL E 2 O3 BNDG E 3 1555 1555 1.34 LINK O4 BNDG E 3 C1 FUC E 4 1555 1555 1.34 LINK O3 ANAG F 1 C1 GAL F 2 1555 1555 1.45 LINK O3 BNDG F 1 C1 GAL F 2 1555 1555 1.34 LINK O4 ANAG F 1 C1 FUC F 3 1555 1555 1.45 LINK O4 BNDG F 1 C1 FUC F 3 1555 1555 1.34 LINK O3 ANAG G 1 C1 GAL G 2 1555 1555 1.45 LINK O3 BNDG G 1 C1 GAL G 2 1555 1555 1.34 LINK O4 ANAG G 1 C1 FUC G 3 1555 1555 1.45 LINK O4 BNDG G 1 C1 FUC G 3 1555 1555 1.34 LINK O3 ANDG H 1 C1 GAL H 2 1555 1555 1.33 LINK O3 BNAG H 1 C1 GAL H 2 1555 1555 1.45 LINK O4 ANDG H 1 C1 FUC H 3 1555 1555 1.35 LINK O4 BNAG H 1 C1 FUC H 3 1555 1555 1.45 LINK O ASN A 21 CA CA A 201 1555 1555 2.40 LINK OE1 GLU A 95 CA CA A 202 1555 1555 2.48 LINK OE2 GLU A 95 CA CA A 202 1555 1555 2.37 LINK OD1 ASP A 99 CA CA A 202 1555 1555 2.42 LINK OD1 ASP A 101 CA CA A 201 1555 1555 3.05 LINK OD2 ASP A 101 CA CA A 201 1555 1555 2.43 LINK OD1 ASP A 101 CA CA A 202 1555 1555 2.35 LINK OD1 ASN A 103 CA CA A 201 1555 1555 2.31 LINK OD1 ASP A 104 CA CA A 201 1555 1555 2.38 LINK OD1 ASP A 104 CA CA A 202 1555 1555 2.65 LINK OD2 ASP A 104 CA CA A 202 1555 1555 2.31 LINK O GLY A 114 CA CA D 207 1555 1555 2.43 LINK CA CA A 201 O GLY D 114 1555 1555 2.54 LINK CA CA A 201 O3 FUC E 4 1555 1555 2.46 LINK CA CA A 201 O4 FUC E 4 1555 1555 2.46 LINK CA CA A 202 O2 FUC E 4 1555 1555 2.49 LINK CA CA A 202 O3 FUC E 4 1555 1555 2.60 LINK O ASN B 21 CA CA B 203 1555 1555 2.35 LINK OE1 GLU B 95 CA CA B 204 1555 1555 2.47 LINK OE2 GLU B 95 CA CA B 204 1555 1555 2.40 LINK OD1 ASP B 99 CA CA B 204 1555 1555 2.42 LINK OD1 ASP B 101 CA CA B 203 1555 1555 3.09 LINK OD2 ASP B 101 CA CA B 203 1555 1555 2.44 LINK OD1 ASP B 101 CA CA B 204 1555 1555 2.37 LINK OD1 ASN B 103 CA CA B 203 1555 1555 2.41 LINK OD1 ASP B 104 CA CA B 203 1555 1555 2.44 LINK OD1 ASP B 104 CA CA B 204 1555 1555 2.60 LINK OD2 ASP B 104 CA CA B 204 1555 1555 2.41 LINK O GLY B 114 CA CA C 206 1555 1555 2.45 LINK CA CA B 203 O GLY C 114 1555 1555 2.44 LINK CA CA B 203 O3 FUC F 3 1555 1555 2.55 LINK CA CA B 203 O4 FUC F 3 1555 1555 2.46 LINK CA CA B 204 O3 FUC F 3 1555 1555 2.47 LINK CA CA B 204 O2 FUC F 3 1555 1555 2.54 LINK O ASN C 21 CA CA C 206 1555 1555 2.35 LINK OE1 GLU C 95 CA CA C 205 1555 1555 2.44 LINK OE2 GLU C 95 CA CA C 205 1555 1555 2.39 LINK OD1 ASP C 99 CA CA C 205 1555 1555 2.36 LINK OD1 ASP C 101 CA CA C 205 1555 1555 2.31 LINK OD1 ASP C 101 CA CA C 206 1555 1555 3.03 LINK OD2 ASP C 101 CA CA C 206 1555 1555 2.39 LINK OD1 ASN C 103 CA CA C 206 1555 1555 2.39 LINK OD1 ASP C 104 CA CA C 205 1555 1555 2.67 LINK OD2 ASP C 104 CA CA C 205 1555 1555 2.41 LINK OD1 ASP C 104 CA CA C 206 1555 1555 2.43 LINK CA CA C 205 O2 FUC G 3 1555 1555 2.52 LINK CA CA C 205 O3 FUC G 3 1555 1555 2.53 LINK CA CA C 206 O3 FUC G 3 1555 1555 2.49 LINK CA CA C 206 O4 FUC G 3 1555 1555 2.45 LINK O ASN D 21 CA CA D 207 1555 1555 2.36 LINK OE1 GLU D 95 CA CA D 208 1555 1555 2.49 LINK OE2 GLU D 95 CA CA D 208 1555 1555 2.47 LINK OD1 ASP D 99 CA CA D 208 1555 1555 2.40 LINK OD1 ASP D 101 CA CA D 207 1555 1555 3.04 LINK OD2 ASP D 101 CA CA D 207 1555 1555 2.40 LINK OD1 ASP D 101 CA CA D 208 1555 1555 2.40 LINK OD1 ASN D 103 CA CA D 207 1555 1555 2.27 LINK OD1 ASP D 104 CA CA D 207 1555 1555 2.35 LINK OD1 ASP D 104 CA CA D 208 1555 1555 2.69 LINK OD2 ASP D 104 CA CA D 208 1555 1555 2.34 LINK CA CA D 207 O3 FUC H 3 1555 1555 2.52 LINK CA CA D 207 O4 FUC H 3 1555 1555 2.51 LINK CA CA D 208 O3 FUC H 3 1555 1555 2.51 LINK CA CA D 208 O2 FUC H 3 1555 1555 2.44 CISPEP 1 TRP A 111 PRO A 112 0 -9.02 CISPEP 2 TRP B 111 PRO B 112 0 -3.85 CISPEP 3 TRP C 111 PRO C 112 0 -10.04 CISPEP 4 TRP D 111 PRO D 112 0 -9.32 CRYST1 51.575 75.824 52.746 90.00 93.48 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019389 0.000000 0.001179 0.00000 SCALE2 0.000000 0.013188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018994 0.00000