HEADER SUGAR BINDING PROTEIN 18-OCT-04 1W9T TITLE STRUCTURE OF A BETA-1,3-GLUCAN BINDING CBM6 FROM BACILLUS HALODURANS TITLE 2 IN COMPLEX WITH XYLOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH0236 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CBM, RESIDUES 790-925; COMPND 5 SYNONYM: BHCBM6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 86665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SUGAR-BINDING PROTEIN, CARBOHYDRATE-BINDING MODULE, LECTIN, BETA- KEYWDS 2 GLUCAN, CARBOHYDRATE BINDING, GLYCOSIDE HYDROLASE, SUGAR BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.B.BORASTON,A.L.VAN BUEREN REVDAT 6 13-DEC-23 1W9T 1 HETSYN LINK REVDAT 5 29-JUL-20 1W9T 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 07-AUG-13 1W9T 1 AUTHOR REMARK VERSN LINK REVDAT 4 2 1 SITE CONECT MASTER REVDAT 3 24-FEB-09 1W9T 1 VERSN REVDAT 2 03-MAY-05 1W9T 1 AUTHOR JRNL REVDAT 1 03-NOV-04 1W9T 0 JRNL AUTH A.L.VAN BUEREN,C.MORELAND,H.J.GILBERT,A.B.BORASTON JRNL TITL FAMILY 6 CARBOHYDRATE BINDING MODULES RECOGNIZE THE JRNL TITL 2 NON-REDUCING END OF BETA-1,3-LINKED GLUCANS BY PRESENTING A JRNL TITL 3 UNIQUE LIGAND BINDING SURFACE JRNL REF J.BIOL.CHEM. V. 280 530 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15501830 JRNL DOI 10.1074/JBC.M410113200 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 27417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.121 REMARK 3 R VALUE (WORKING SET) : 0.118 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1454 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.21000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.804 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2258 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1886 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3080 ; 1.687 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4378 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 6.761 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;38.019 ;25.082 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 330 ;10.708 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.414 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2512 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 452 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 429 ; 0.309 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2025 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1119 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1280 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 268 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.352 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 69 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1320 ; 1.594 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2132 ; 2.295 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 996 ; 3.355 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 4.903 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1W9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1290021350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GMM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 ASN A 141 REMARK 465 GLY A 142 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 MET B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 ASN B 141 REMARK 465 GLY B 142 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 XYS A 1146 C1 XYP A 1148 1.67 REMARK 500 O4 XYP A 1147 C1 XYP A 1148 1.67 REMARK 500 O4 XYS B 1146 C1 XYP B 1148 1.67 REMARK 500 O4 XYP B 1147 C1 XYP B 1148 1.67 REMARK 500 OE1 GLN A 103 O HOH A 2140 1.90 REMARK 500 O HOH A 2039 O HOH A 2053 2.04 REMARK 500 O GLY A 97 O HOH A 2133 2.07 REMARK 500 O GLY B 97 O HOH B 2135 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2002 O HOH B 2181 1565 2.12 REMARK 500 O HOH A 2138 O HOH B 2140 1566 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 103 CB GLN B 103 CG -0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 7 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 90 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 45.51 -88.42 REMARK 500 ALA B 19 43.46 -87.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2011 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B2021 DISTANCE = 5.88 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XYP A 1148 REMARK 610 XYP B 1148 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1141 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 16 OE1 REMARK 620 2 GLU A 18 OE1 106.9 REMARK 620 3 ASP A 38 O 158.9 84.2 REMARK 620 4 ASN A 134 O 84.2 96.4 112.8 REMARK 620 5 ASN A 134 OD1 88.4 162.8 83.8 77.0 REMARK 620 6 HOH A2034 O 77.1 83.8 86.6 160.5 107.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1142 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 25 O REMARK 620 2 TRP A 42 O 83.9 REMARK 620 3 ASN A 44 OD1 163.7 88.4 REMARK 620 4 ASP A 47 OD2 93.2 108.4 102.8 REMARK 620 5 THR B 84 O 98.9 122.5 73.3 128.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1142 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 84 O REMARK 620 2 GLY B 25 O 97.6 REMARK 620 3 TRP B 42 O 121.9 80.2 REMARK 620 4 ASN B 44 OD1 75.6 160.6 88.0 REMARK 620 5 ASP B 47 OD2 128.8 95.0 109.1 103.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1143 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 90 O REMARK 620 2 ASP A 90 OD2 83.7 REMARK 620 3 HOH A2054 O 165.1 82.1 REMARK 620 4 HOH A2124 O 98.9 90.1 85.9 REMARK 620 5 HOH A2150 O 84.6 95.2 91.9 174.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1141 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 16 OE1 REMARK 620 2 GLU B 18 OE1 107.7 REMARK 620 3 ASP B 38 O 160.0 83.4 REMARK 620 4 ASN B 134 O 85.3 95.1 110.7 REMARK 620 5 ASN B 134 OD1 89.1 160.5 83.7 76.0 REMARK 620 6 HOH B2033 O 79.5 83.8 85.4 163.6 109.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1143 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 90 O REMARK 620 2 ASP B 90 OD2 78.2 REMARK 620 3 HOH B2059 O 161.5 85.1 REMARK 620 4 HOH B2060 O 107.4 174.2 89.2 REMARK 620 5 HOH B2127 O 98.8 95.2 90.5 85.6 REMARK 620 6 HOH B2150 O 83.1 94.2 90.3 85.1 170.7 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: BETA-D-XYLOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 XYP A 1147 REMARK 630 XYP A 1148 REMARK 630 XYP B 1147 REMARK 630 XYP B 1148 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W9S RELATED DB: PDB REMARK 900 STRUCTURE OF A BETA-1,3-GLUCAN BINDING CBM6 FROM BACILLUS HALODURANS REMARK 900 RELATED ID: 1W9W RELATED DB: PDB REMARK 900 STRUCTURE OF A BETA-1,3-GLUCAN BINDING CBM6 FROM BACILLUS REMARK 900 HALODURANS IN COMPLEX WITH LAMINARIHEXAOSE DBREF 1W9T A 1 6 PDB 1W9T 1W9T 1 6 DBREF 1W9T A 7 142 UNP Q9KG76 Q9KG76 790 925 DBREF 1W9T B 1 6 PDB 1W9T 1W9T 1 6 DBREF 1W9T B 7 142 UNP Q9KG76 Q9KG76 790 925 SEQRES 1 A 142 GLY SER HIS MET ALA SER ASP LEU LYS ASN PRO TYR GLU SEQRES 2 A 142 ARG ILE GLN ALA GLU ALA TYR ASP ALA MET SER GLY ILE SEQRES 3 A 142 GLN THR GLU GLY THR ASP ASP ASP GLY GLY GLY ASP ASN SEQRES 4 A 142 ILE GLY TRP ILE ASN ASP GLY ASP TRP VAL LYS TYR GLU SEQRES 5 A 142 ARG VAL HIS PHE GLU ARG ASP ALA SER SER ILE GLU VAL SEQRES 6 A 142 ARG VAL ALA SER ASP THR PRO GLY GLY ARG ILE GLU ILE SEQRES 7 A 142 ARG THR GLY SER PRO THR GLY THR LEU LEU GLY ASP VAL SEQRES 8 A 142 GLN VAL PRO ASN THR GLY GLY TRP GLN GLN TRP GLN THR SEQRES 9 A 142 VAL THR GLY ASN VAL GLN ILE GLN PRO GLY THR TYR ASP SEQRES 10 A 142 VAL TYR LEU VAL PHE LYS GLY SER PRO GLU TYR ASP LEU SEQRES 11 A 142 MET ASN VAL ASN TRP PHE VAL PHE ARG ALA ASN GLY SEQRES 1 B 142 GLY SER HIS MET ALA SER ASP LEU LYS ASN PRO TYR GLU SEQRES 2 B 142 ARG ILE GLN ALA GLU ALA TYR ASP ALA MET SER GLY ILE SEQRES 3 B 142 GLN THR GLU GLY THR ASP ASP ASP GLY GLY GLY ASP ASN SEQRES 4 B 142 ILE GLY TRP ILE ASN ASP GLY ASP TRP VAL LYS TYR GLU SEQRES 5 B 142 ARG VAL HIS PHE GLU ARG ASP ALA SER SER ILE GLU VAL SEQRES 6 B 142 ARG VAL ALA SER ASP THR PRO GLY GLY ARG ILE GLU ILE SEQRES 7 B 142 ARG THR GLY SER PRO THR GLY THR LEU LEU GLY ASP VAL SEQRES 8 B 142 GLN VAL PRO ASN THR GLY GLY TRP GLN GLN TRP GLN THR SEQRES 9 B 142 VAL THR GLY ASN VAL GLN ILE GLN PRO GLY THR TYR ASP SEQRES 10 B 142 VAL TYR LEU VAL PHE LYS GLY SER PRO GLU TYR ASP LEU SEQRES 11 B 142 MET ASN VAL ASN TRP PHE VAL PHE ARG ALA ASN GLY HET XYP C 1 10 HET XYP C 2 9 HET XYP D 1 10 HET XYP D 2 9 HET NA A1141 1 HET NA A1142 1 HET NA A1143 1 HET XYS A1146 10 HET XYP A1147 10 HET XYP A1148 9 HET NA B1141 1 HET NA B1142 1 HET NA B1143 1 HET XYS B1146 10 HET XYP B1147 10 HET XYP B1148 9 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM NA SODIUM ION HETNAM XYS ALPHA-D-XYLOPYRANOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 3 XYP 8(C5 H10 O5) FORMUL 5 NA 6(NA 1+) FORMUL 8 XYS 2(C5 H10 O5) FORMUL 17 HOH *372(H2 O) SHEET 1 AA 4 ILE A 15 GLN A 16 0 SHEET 2 AA 4 ASN A 132 ARG A 139 -1 O PHE A 136 N ILE A 15 SHEET 3 AA 4 ALA A 60 SER A 69 -1 N SER A 61 O ARG A 139 SHEET 4 AA 4 GLY A 98 ILE A 111 -1 N GLY A 98 O SER A 69 SHEET 1 AB 5 ALA A 22 SER A 24 0 SHEET 2 AB 5 TRP A 48 PHE A 56 -1 O TRP A 48 N SER A 24 SHEET 3 AB 5 GLY A 114 LYS A 123 -1 O GLY A 114 N PHE A 56 SHEET 4 AB 5 GLY A 74 THR A 80 -1 O ARG A 75 N LYS A 123 SHEET 5 AB 5 LEU A 87 VAL A 93 -1 N LEU A 88 O ILE A 78 SHEET 1 AC 2 GLN A 27 GLY A 30 0 SHEET 2 AC 2 ASP A 38 GLY A 41 -1 O ASN A 39 N GLU A 29 SHEET 1 BA 4 ILE B 15 GLN B 16 0 SHEET 2 BA 4 ASN B 132 ARG B 139 -1 O PHE B 136 N ILE B 15 SHEET 3 BA 4 ALA B 60 SER B 69 -1 N SER B 61 O ARG B 139 SHEET 4 BA 4 GLY B 98 ILE B 111 -1 N GLY B 98 O SER B 69 SHEET 1 BB 5 ALA B 22 SER B 24 0 SHEET 2 BB 5 TRP B 48 PHE B 56 -1 O TRP B 48 N SER B 24 SHEET 3 BB 5 GLY B 114 LYS B 123 -1 O GLY B 114 N PHE B 56 SHEET 4 BB 5 GLY B 74 THR B 80 -1 O ARG B 75 N LYS B 123 SHEET 5 BB 5 LEU B 87 VAL B 93 -1 N LEU B 88 O ILE B 78 SHEET 1 BC 2 GLN B 27 GLY B 30 0 SHEET 2 BC 2 ASP B 38 GLY B 41 -1 O ASN B 39 N GLU B 29 LINK O4 XYP C 1 C1 XYP C 2 1555 1555 1.51 LINK O4 XYP D 1 C1 XYP D 2 1555 1555 1.54 LINK OE1 GLN A 16 NA NA A1141 1555 1555 2.41 LINK OE1 GLU A 18 NA NA A1141 1555 1555 2.49 LINK O GLY A 25 NA NA A1142 1555 1555 2.31 LINK O ASP A 38 NA NA A1141 1555 1555 2.33 LINK O TRP A 42 NA NA A1142 1555 1555 2.29 LINK OD1 ASN A 44 NA NA A1142 1555 1555 2.40 LINK OD2 ASP A 47 NA NA A1142 1555 1555 2.27 LINK O THR A 84 NA NA B1142 1655 1555 2.37 LINK O ASP A 90 NA NA A1143 1555 1555 2.32 LINK OD2 ASP A 90 NA NA A1143 1555 1555 2.25 LINK O ASN A 134 NA NA A1141 1555 1555 2.48 LINK OD1 ASN A 134 NA NA A1141 1555 1555 2.36 LINK NA NA A1141 O HOH A2034 1555 1555 2.52 LINK NA NA A1142 O THR B 84 1555 1555 2.33 LINK NA NA A1143 O HOH A2054 1555 1455 2.60 LINK NA NA A1143 O HOH A2124 1555 1555 2.21 LINK NA NA A1143 O HOH A2150 1555 1555 2.27 LINK OE1 GLN B 16 NA NA B1141 1555 1555 2.40 LINK OE1 GLU B 18 NA NA B1141 1555 1555 2.46 LINK O GLY B 25 NA NA B1142 1555 1555 2.36 LINK O ASP B 38 NA NA B1141 1555 1555 2.26 LINK O TRP B 42 NA NA B1142 1555 1555 2.28 LINK OD1 ASN B 44 NA NA B1142 1555 1555 2.38 LINK OD2 ASP B 47 NA NA B1142 1555 1555 2.24 LINK O ASP B 90 NA NA B1143 1555 1555 2.51 LINK OD2 ASP B 90 NA NA B1143 1555 1555 2.28 LINK O ASN B 134 NA NA B1141 1555 1555 2.50 LINK OD1 ASN B 134 NA NA B1141 1555 1555 2.42 LINK NA NA B1141 O HOH B2033 1555 1555 2.58 LINK NA NA B1143 O HOH B2059 1555 1455 2.58 LINK NA NA B1143 O HOH B2060 1555 1455 2.52 LINK NA NA B1143 O HOH B2127 1555 1555 2.20 LINK NA NA B1143 O HOH B2150 1555 1555 2.27 CRYST1 30.711 40.967 56.039 108.89 105.87 90.03 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032562 0.000017 0.009837 0.00000 SCALE2 0.000000 0.024410 0.008729 0.00000 SCALE3 0.000000 0.000000 0.019702 0.00000