HEADER HYDROLASE 20-OCT-04 1W9X TITLE BACILLUS HALMAPALUS ALPHA AMYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA AMYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ACARBOSE-DERIVED NONASACCHARIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALMAPALUS; SOURCE 3 ORGANISM_TAXID: 79882; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1423 KEYWDS HYDROLASE, AMYLASE, ACARBOSE, BACILLUS, GLYCOSIDE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.J.DAVIES,A.M.BRZOZOWSKI,Z.DAUTER,M.D.RASMUSSEN,T.V.BORCHERT, AUTHOR 2 K.S.WILSON REVDAT 4 13-DEC-23 1W9X 1 HETSYN REVDAT 3 29-JUL-20 1W9X 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 24-FEB-09 1W9X 1 VERSN REVDAT 1 09-FEB-05 1W9X 0 JRNL AUTH G.J.DAVIES,A.M.BRZOZOWSKI,Z.DAUTER,M.D.RASMUSSEN, JRNL AUTH 2 T.V.BORCHERT,K.S.WILSON JRNL TITL STRUCTURE OF A BACILLUS HALMAPALUS FAMILY 13 ALPHA-AMYLASE, JRNL TITL 2 BHA, IN COMPLEX WITH AN ACARBOSE-DERIVED NONASACCHARIDE AT JRNL TITL 3 2.1 A RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 190 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15681870 JRNL DOI 10.1107/S0907444904027118 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 699 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2334 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : 1.20000 REMARK 3 B33 (A**2) : -2.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.781 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4138 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5646 ; 1.457 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 6.226 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;34.696 ;24.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;13.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 584 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3252 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1659 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2767 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 226 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.086 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2376 ; 0.873 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3810 ; 1.653 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1894 ; 2.683 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1836 ; 4.015 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1W9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1290021364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30048 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1E3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MGML-1 IN 50 MM IMIDAZOLE, 5 MM REMARK 280 CACL2, 25 MM ACARBOSE, PH 7.5 MIXED IN 1:1 RATIO WITH THE WELL REMARK 280 SOLUTION CONSISTING OF 0.1 M IMIDAZOLE PH 7.5 100 MM MALTOSE, 5 REMARK 280 MM CACL2, AND WITH 18% (W/V) MONOMETHYLETHER POLYETHYLENE GLYCOL REMARK 280 5K AS PRECIPITANT., PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.61500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.92350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.61500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.92350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 485 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 152 NH2 ARG A 219 2.12 REMARK 500 OD1 ASN A 418 O THR A 420 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 12 51.52 -94.19 REMARK 500 LEU A 66 39.01 -86.49 REMARK 500 PHE A 145 63.12 61.43 REMARK 500 TYR A 152 -36.32 70.39 REMARK 500 TYR A 203 -146.21 56.18 REMARK 500 MET A 261 92.85 37.85 REMARK 500 ASP A 271 101.40 -160.43 REMARK 500 SER A 342 62.23 -167.24 REMARK 500 SER A 378 44.40 -101.06 REMARK 500 HIS A 421 82.09 69.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1486 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 106 OD1 REMARK 620 2 ASP A 199 O 102.7 REMARK 620 3 ASP A 199 OD1 165.9 82.1 REMARK 620 4 ASP A 205 OD1 87.5 75.0 106.6 REMARK 620 5 ASP A 205 OD2 126.0 89.1 66.7 44.7 REMARK 620 6 HIS A 240 O 80.8 93.3 85.8 161.3 151.8 REMARK 620 7 HOH A2126 O 83.0 163.6 96.0 90.0 75.3 102.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1487 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 163 OD1 REMARK 620 2 ASP A 163 OD2 51.5 REMARK 620 3 ALA A 186 O 80.9 88.3 REMARK 620 4 ASP A 188 OD1 132.5 82.4 112.2 REMARK 620 5 ASP A 207 OD1 78.9 90.4 155.1 92.3 REMARK 620 6 ASP A 209 OD2 154.3 154.1 97.6 72.0 94.5 REMARK 620 7 HOH A2105 O 76.5 127.9 86.6 146.0 74.7 77.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1489 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 163 OD2 REMARK 620 2 ASP A 188 OD2 89.6 REMARK 620 3 ASP A 199 OD2 89.3 92.6 REMARK 620 4 ASP A 205 OD2 114.9 155.4 90.8 REMARK 620 5 VAL A 206 O 104.0 87.1 166.7 84.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1488 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 305 O REMARK 620 2 TYR A 307 O 107.2 REMARK 620 3 HIS A 408 O 164.2 78.2 REMARK 620 4 ASN A 409 OD1 88.9 150.0 80.2 REMARK 620 5 ASP A 432 OD1 95.6 119.8 94.4 82.3 REMARK 620 6 ASP A 432 OD2 78.5 80.2 117.3 128.6 50.4 REMARK 620 7 HOH A2180 O 80.8 76.1 86.2 82.0 164.0 142.1 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. DBREF 1W9X A 5 485 PDB 1W9X 1W9X 5 485 SEQRES 1 A 481 THR ASN GLY THR MET MET GLN TYR PHE GLU TRP HIS LEU SEQRES 2 A 481 PRO ASN ASP GLY GLN HIS TRP ASN ARG LEU ARG ASP ASP SEQRES 3 A 481 ALA SER ASN LEU ARG ASN ARG GLY ILE THR ALA ILE TRP SEQRES 4 A 481 ILE PRO PRO ALA TRP LYS GLY THR SER GLN ASN ASP VAL SEQRES 5 A 481 GLY TYR GLY ALA TYR ASP LEU TYR ASP LEU GLY GLU PHE SEQRES 6 A 481 ASN GLN LYS GLY THR VAL ARG THR LYS TYR GLY THR ARG SEQRES 7 A 481 SER GLN LEU GLU SER ALA ILE HIS ALA LEU LYS ASN ASN SEQRES 8 A 481 GLY VAL GLN VAL TYR GLY ASP VAL VAL MET ASN HIS LYS SEQRES 9 A 481 GLY GLY ALA ASP ALA THR GLU ASN VAL LEU ALA VAL GLU SEQRES 10 A 481 VAL ASN PRO ASN ASN ARG ASN GLN GLU ILE SER GLY ASP SEQRES 11 A 481 TYR THR ILE GLU ALA TRP THR LYS PHE ASP PHE PRO GLY SEQRES 12 A 481 ARG GLY ASN THR TYR SER ASP PHE LYS TRP ARG TRP TYR SEQRES 13 A 481 HIS PHE ASP GLY VAL ASP TRP ASP GLN SER ARG GLN PHE SEQRES 14 A 481 GLN ASN ARG ILE TYR LYS PHE ARG GLY ASP GLY LYS ALA SEQRES 15 A 481 TRP ASP TRP GLU VAL ASP SER GLU ASN GLY ASN TYR ASP SEQRES 16 A 481 TYR LEU MET TYR ALA ASP VAL ASP MET ASP HIS PRO GLU SEQRES 17 A 481 VAL VAL ASN GLU LEU ARG ARG TRP GLY GLU TRP TYR THR SEQRES 18 A 481 ASN THR LEU ASN LEU ASP GLY PHE ARG ILE ASP ALA VAL SEQRES 19 A 481 LYS HIS ILE LYS TYR SER PHE THR ARG ASP TRP LEU THR SEQRES 20 A 481 HIS VAL ARG ASN ALA THR GLY LYS GLU MET PHE ALA VAL SEQRES 21 A 481 ALA GLU PHE TRP LYS ASN ASP LEU GLY ALA LEU GLU ASN SEQRES 22 A 481 TYR LEU ASN LYS THR ASN TRP ASN HIS SER VAL PHE ASP SEQRES 23 A 481 VAL PRO LEU HIS TYR ASN LEU TYR ASN ALA SER ASN SER SEQRES 24 A 481 GLY GLY ASN TYR ASP MET ALA LYS LEU LEU ASN GLY THR SEQRES 25 A 481 VAL VAL GLN LYS HIS PRO MET HIS ALA VAL THR PHE VAL SEQRES 26 A 481 ASP ASN HIS ASP SER GLN PRO GLY GLU SER LEU GLU SER SEQRES 27 A 481 PHE VAL GLN GLU TRP PHE LYS PRO LEU ALA TYR ALA LEU SEQRES 28 A 481 ILE LEU THR ARG GLU GLN GLY TYR PRO SER VAL PHE TYR SEQRES 29 A 481 GLY ASP TYR TYR GLY ILE PRO THR HIS SER VAL PRO ALA SEQRES 30 A 481 MET LYS ALA LYS ILE ASP PRO ILE LEU GLU ALA ARG GLN SEQRES 31 A 481 ASN PHE ALA TYR GLY THR GLN HIS ASP TYR PHE ASP HIS SEQRES 32 A 481 HIS ASN ILE ILE GLY TRP THR ARG GLU GLY ASN THR THR SEQRES 33 A 481 HIS PRO ASN SER GLY LEU ALA THR ILE MET SER ASP GLY SEQRES 34 A 481 PRO GLY GLY GLU LYS TRP MET TYR VAL GLY GLN ASN LYS SEQRES 35 A 481 ALA GLY GLN VAL TRP HIS ASP ILE THR GLY ASN LYS PRO SEQRES 36 A 481 GLY THR VAL THR ILE ASN ALA ASP GLY TRP ALA ASN PHE SEQRES 37 A 481 SER VAL ASN GLY GLY SER VAL SER ILE TRP VAL LYS ARG HET BGC B 1 12 HET GLC B 2 11 HET AC1 B 3 21 HET GLC B 4 11 HET GLC B 5 11 HET GLC B 6 11 HET AC1 B 7 21 HET CA A1486 1 HET CA A1487 1 HET CA A1488 1 HET NA A1489 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM AC1 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETNAM 2 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETNAM 3 AC1 GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN AC1 6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX- HETSYN 2 AC1 2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL; 4,6- HETSYN 3 AC1 DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETSYN 4 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETSYN 5 AC1 GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 6 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 7 AC1 D-GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 8 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 9 AC1 GLUCOSE FORMUL 2 BGC C6 H12 O6 FORMUL 2 GLC 4(C6 H12 O6) FORMUL 2 AC1 2(C13 H23 N O8) FORMUL 3 CA 3(CA 2+) FORMUL 6 NA NA 1+ FORMUL 7 HOH *290(H2 O) HELIX 1 1 GLN A 22 ARG A 37 1 16 HELIX 2 2 THR A 81 ASN A 95 1 15 HELIX 3 3 ARG A 158 TYR A 160 5 3 HELIX 4 4 HIS A 210 ASN A 229 1 20 HELIX 5 5 ALA A 237 ILE A 241 5 5 HELIX 6 6 LYS A 242 GLY A 258 1 17 HELIX 7 7 ASP A 271 THR A 282 1 12 HELIX 8 8 ASP A 290 ASN A 302 1 13 HELIX 9 9 ASP A 308 LEU A 312 5 5 HELIX 10 10 THR A 316 HIS A 321 1 6 HELIX 11 11 PHE A 348 ARG A 359 1 12 HELIX 12 12 TYR A 368 GLY A 373 1 6 HELIX 13 13 MET A 382 PHE A 396 1 15 HELIX 14 14 GLY A 443 ALA A 447 5 5 SHEET 1 AA10 MET A 9 GLN A 11 0 SHEET 2 AA10 ALA A 41 ILE A 44 1 O ALA A 41 N MET A 10 SHEET 3 AA10 GLN A 98 VAL A 103 1 O GLN A 98 N ILE A 42 SHEET 4 AA10 GLY A 232 ILE A 235 1 O GLY A 232 N GLY A 101 SHEET 5 AA10 PHE A 262 ALA A 265 1 O PHE A 262 N PHE A 233 SHEET 6 AA10 SER A 287 PHE A 289 1 O SER A 287 N ALA A 265 SHEET 7 AA10 ALA A 325 PHE A 328 1 N VAL A 326 O VAL A 288 SHEET 8 AA10 TYR A 363 PHE A 367 1 O TYR A 363 N THR A 327 SHEET 9 AA10 MET A 9 GLN A 11 1 O MET A 9 N VAL A 366 SHEET 10 AA10 MET A 9 GLN A 11 0 SHEET 1 AB 9 HIS A 107 LYS A 108 0 SHEET 2 AB 9 ALA A 204 VAL A 206 -1 O ALA A 204 N LYS A 108 SHEET 3 AB 9 PHE A 162 VAL A 165 -1 N ASP A 163 O ASP A 205 SHEET 4 AB 9 ILE A 177 PHE A 180 -1 O TYR A 178 N VAL A 165 SHEET 5 AB 9 ALA A 113 ASN A 123 -1 O VAL A 120 N LYS A 179 SHEET 6 AB 9 ASN A 126 GLU A 130 -1 N ASN A 126 O ASN A 123 SHEET 7 AB 9 ALA A 113 ASN A 123 -1 O ASN A 123 N ASN A 126 SHEET 8 AB 9 TYR A 135 LYS A 142 -1 O TYR A 135 N ALA A 119 SHEET 9 AB 9 ALA A 113 ASN A 123 -1 O ALA A 113 N LYS A 142 SHEET 1 AC 6 GLN A 401 TYR A 404 0 SHEET 2 AC 6 ILE A 410 ARG A 415 -1 O GLY A 412 N TYR A 404 SHEET 3 AC 6 LEU A 426 SER A 431 -1 O LEU A 426 N ARG A 415 SHEET 4 AC 6 SER A 478 LYS A 484 -1 O SER A 478 N SER A 431 SHEET 5 AC 6 VAL A 450 ASP A 453 -1 O HIS A 452 N VAL A 483 SHEET 6 AC 6 THR A 461 THR A 463 -1 O VAL A 462 N TRP A 451 SHEET 1 AD 2 GLY A 436 TYR A 441 0 SHEET 2 AD 2 TRP A 469 VAL A 474 -1 O ALA A 470 N MET A 440 LINK O4 BGC B 1 C1 GLC B 2 1555 1555 1.45 LINK O4 GLC B 2 C1 AC1 B 3 1555 1555 1.46 LINK O4 AC1 B 3 C1 GLC B 4 1555 1555 1.43 LINK O4 GLC B 4 C1 GLC B 5 1555 1555 1.46 LINK O4 GLC B 5 C1 GLC B 6 1555 1555 1.46 LINK O4 GLC B 6 C1 AC1 B 7 1555 1555 1.45 LINK OD1 ASN A 106 CA CA A1486 1555 1555 2.30 LINK OD1 ASP A 163 CA CA A1487 1555 1555 2.53 LINK OD2 ASP A 163 CA CA A1487 1555 1555 2.55 LINK OD2 ASP A 163 NA NA A1489 1555 1555 2.31 LINK O ALA A 186 CA CA A1487 1555 1555 2.33 LINK OD1 ASP A 188 CA CA A1487 1555 1555 2.29 LINK OD2 ASP A 188 NA NA A1489 1555 1555 2.56 LINK O ASP A 199 CA CA A1486 1555 1555 2.38 LINK OD1 ASP A 199 CA CA A1486 1555 1555 2.26 LINK OD2 ASP A 199 NA NA A1489 1555 1555 2.29 LINK OD1 ASP A 205 CA CA A1486 1555 1555 2.44 LINK OD2 ASP A 205 CA CA A1486 1555 1555 3.12 LINK OD2 ASP A 205 NA NA A1489 1555 1555 2.38 LINK O VAL A 206 NA NA A1489 1555 1555 2.58 LINK OD1 ASP A 207 CA CA A1487 1555 1555 2.26 LINK OD2 ASP A 209 CA CA A1487 1555 1555 2.81 LINK O HIS A 240 CA CA A1486 1555 1555 2.30 LINK O GLY A 305 CA CA A1488 1555 1555 2.35 LINK O TYR A 307 CA CA A1488 1555 1555 2.32 LINK O HIS A 408 CA CA A1488 1555 1555 2.45 LINK OD1 ASN A 409 CA CA A1488 1555 1555 2.51 LINK OD1 ASP A 432 CA CA A1488 1555 1555 2.43 LINK OD2 ASP A 432 CA CA A1488 1555 1555 2.59 LINK CA CA A1486 O HOH A2126 1555 1555 2.53 LINK CA CA A1487 O HOH A2105 1555 1555 2.56 LINK CA CA A1488 O HOH A2180 1555 1555 2.36 CISPEP 1 TRP A 189 GLU A 190 0 2.10 CRYST1 48.180 75.847 155.230 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006442 0.00000