HEADER HYDROLASE 30-OCT-04 1WB4 TITLE S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM TITLE 2 THERMOCELLUM COMPLEXED WITH SINAPINATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE Y; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FERULOYL ESTERASE DOMAIN, RESIDUES 792-1077; COMPND 5 SYNONYM: XYLANASE Y, XYLY, 1,4-BETA-D-XYLAN XYLANOHYDROLASE Y, COMPND 6 XYLANASE XYN10B; COMPND 7 EC: 3.2.1.8; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 1515; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ESTERASE FAMILY 1, FERULIC ACID, GLYCOSIDASE, HYDROLASE, XYLAN KEYWDS 2 DEGRADATION, XYLANASE EXPDTA X-RAY DIFFRACTION AUTHOR N.TARBOURIECH,J.A.PRATES,C.FONTES,G.J.DAVIES REVDAT 3 13-DEC-23 1WB4 1 LINK REVDAT 2 24-FEB-09 1WB4 1 VERSN REVDAT 1 02-FEB-05 1WB4 0 JRNL AUTH N.TARBOURIECH,J.A.PRATES,C.FONTES,G.J.DAVIES JRNL TITL MOLECULAR DETERMINANTS OF SUBSTRATE SPECIFICITY IN THE JRNL TITL 2 FERULOYL ESTERASE MODULE OF XYLANASE 10B FROM CLOSTRIDIUM JRNL TITL 3 THERMOCELLUM JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 194 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15681871 JRNL DOI 10.1107/S0907444904029695 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 146352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7700 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9869 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1380 REMARK 3 BIN FREE R VALUE SET COUNT : 533 REMARK 3 BIN FREE R VALUE : 0.1600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.477 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5006 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4123 ; 0.044 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6799 ; 1.835 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9685 ; 3.244 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 582 ; 5.906 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 657 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5682 ; 0.042 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1122 ; 0.058 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1054 ; 0.275 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5210 ; 0.287 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2650 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 449 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.259 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2875 ; 1.823 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4659 ; 2.495 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2131 ; 3.215 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2138 ; 4.355 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 1WB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1290021467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 157644 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1GKL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA ACETATE 1M CD ACETATE 50 MM REMARK 280 GLYCEROL 5% HEPES PH 7.5 100 MM, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.53300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.59000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.20250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.59000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.53300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.20250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION IN CHAIN A, SER 954 TO ALA REMARK 400 ENGINEERED MUTATION IN CHAIN B, SER 954 TO ALA REMARK 400 CATALYTIC ACTIVITY: ENDOHYDROLYSIS OF 1,4-BETA-D-XYLOSIDIC REMARK 400 LINKAGES IN XYLANS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 789 REMARK 465 ALA A 790 REMARK 465 SER A 791 REMARK 465 ASP A 792 REMARK 465 LYS A 793 REMARK 465 PHE A 794 REMARK 465 PRO A 795 REMARK 465 VAL A 796 REMARK 465 ALA A 797 REMARK 465 GLU A 798 REMARK 465 ASN A 799 REMARK 465 PRO A 800 REMARK 465 SER A 801 REMARK 465 SER A 802 REMARK 465 MET B 789 REMARK 465 ALA B 790 REMARK 465 SER B 791 REMARK 465 ASP B 792 REMARK 465 LYS B 793 REMARK 465 PHE B 794 REMARK 465 PRO B 795 REMARK 465 VAL B 796 REMARK 465 ALA B 797 REMARK 465 GLU B 798 REMARK 465 ASN B 799 REMARK 465 PRO B 800 REMARK 465 SER B 801 REMARK 465 SER B 802 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 854 O HOH A 3101 0.55 REMARK 500 ND1 HIS B 1081 CD CD B 2096 1.39 REMARK 500 CG ASN A 854 O HOH A 3101 1.68 REMARK 500 OH TYR A 819 OE2 GLU A 892 1.84 REMARK 500 NH2 ARG A 1000 O HOH A 3248 1.97 REMARK 500 OH TYR B 819 OE2 GLU B 892 2.01 REMARK 500 O TRP B 982 O HOH B 3226 2.05 REMARK 500 O TRP A 982 O HOH A 3224 2.07 REMARK 500 SD MET A 955 O HOH A 3015 2.08 REMARK 500 NH2 ARG A 1000 O HOH A 3248 2.08 REMARK 500 CE MET A 955 O HOH A 3015 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 879 CD LYS A 879 CE 0.154 REMARK 500 GLN A 915 CD GLN A 915 NE2 -0.173 REMARK 500 SER A 930 CB SER A 930 OG -0.099 REMARK 500 GLU B 892 CD GLU B 892 OE1 -0.098 REMARK 500 HIS B1065 CE1 HIS B1065 NE2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 915 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 945 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 948 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 948 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A1000 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A1000 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A1006 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B1006 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B1064 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 HIS B1076 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 HIS B1076 ND1 - CE1 - NE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 HIS B1076 CE1 - NE2 - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 878 -55.89 -132.52 REMARK 500 THR A 931 -167.12 -106.76 REMARK 500 ALA A 954 -116.71 65.96 REMARK 500 TYR A 983 89.43 -156.70 REMARK 500 THR A1040 147.56 174.71 REMARK 500 ASN A1047 14.80 -152.51 REMARK 500 VAL B 878 -51.29 -134.33 REMARK 500 ALA B 954 -117.45 67.22 REMARK 500 TYR B 983 88.01 -158.13 REMARK 500 THR B1040 147.46 174.80 REMARK 500 ASN B1047 13.47 -149.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS B1065 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B3010 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH B3011 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B3110 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B3147 DISTANCE = 7.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2090 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 823 SG REMARK 620 2 HIS A 886 ND1 96.5 REMARK 620 3 MET A 889 SD 80.4 172.0 REMARK 620 4 HOH A3157 O 128.3 89.8 86.4 REMARK 620 5 GLU B1017 OE1 109.0 90.9 97.1 122.2 REMARK 620 6 GLU B1017 OE2 155.2 100.1 85.3 70.3 52.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2091 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 894 OE2 REMARK 620 2 HIS A1076 ND1 88.3 REMARK 620 3 GLU A1079 OE1 117.5 97.4 REMARK 620 4 GLU A1079 OE2 170.3 97.5 54.2 REMARK 620 5 HIS A1083 ND1 85.2 172.3 89.2 89.5 REMARK 620 6 HIS A1085 NE2 101.0 82.8 141.5 87.5 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2097 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 926 O REMARK 620 2 TYR A 929 O 85.0 REMARK 620 3 HOH A3193 O 110.0 91.5 REMARK 620 4 HOH A3197 O 164.7 108.5 77.5 REMARK 620 5 HOH A3202 O 86.8 171.3 93.9 79.3 REMARK 620 6 HOH A3203 O 89.8 88.8 160.2 83.6 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2093 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 947 NE2 REMARK 620 2 HIS A1080 NE2 89.3 REMARK 620 3 HOH A3218 O 91.1 104.1 REMARK 620 4 HOH A3331 O 93.3 96.3 159.1 REMARK 620 5 HOH A3341 O 177.3 88.3 90.5 85.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2098 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 985 O REMARK 620 2 HOH A3229 O 92.5 REMARK 620 3 HOH B3096 O 176.4 85.8 REMARK 620 4 HOH B3234 O 78.0 102.2 99.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2092 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1007 OE1 REMARK 620 2 GLU A1007 OE2 53.9 REMARK 620 3 HOH A3259 O 95.5 126.8 REMARK 620 4 HIS B1082 NE2 154.6 100.8 100.6 REMARK 620 5 HIS B1084 NE2 92.0 118.9 102.3 103.4 REMARK 620 6 HOH B3364 O 91.2 95.6 36.6 90.2 138.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B2092 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1017 OE2 REMARK 620 2 GLU A1017 OE1 53.5 REMARK 620 3 CYS B 823 SG 153.4 106.9 REMARK 620 4 HIS B 886 ND1 102.1 90.6 95.3 REMARK 620 5 MET B 889 SD 85.1 99.2 80.5 170.1 REMARK 620 6 HOH B3157 O 73.6 125.9 126.9 90.2 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2096 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1076 O REMARK 620 2 HOH A3326 O 98.4 REMARK 620 3 HOH A3332 O 101.7 97.1 REMARK 620 4 HOH A3335 O 84.7 174.9 78.3 REMARK 620 5 HOH A3336 O 87.9 85.9 169.3 98.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2094 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1081 ND1 REMARK 620 2 HOH A3347 O 101.1 REMARK 620 3 HOH A3353 O 117.5 55.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B2094 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1082 NE2 REMARK 620 2 HIS A1084 NE2 100.1 REMARK 620 3 HOH A3354 O 91.6 142.3 REMARK 620 4 GLU B1007 OE1 157.6 91.0 91.3 REMARK 620 5 GLU B1007 OE2 103.4 113.9 97.7 54.2 REMARK 620 6 HOH B3264 O 103.8 98.5 43.8 93.6 132.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2095 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACY A2089 O REMARK 620 2 ACY A2089 OXT 52.2 REMARK 620 3 HOH A3369 O 132.9 81.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A2099 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3193 O REMARK 620 2 HOH A3197 O 74.7 REMARK 620 3 HOH A3202 O 90.4 81.3 REMARK 620 4 HOH A3206 O 176.4 103.2 86.3 REMARK 620 5 HOH B3209 O 101.4 89.1 162.3 81.4 REMARK 620 6 HOH B3376 O 78.7 152.3 106.6 103.8 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B2098 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A3194 O REMARK 620 2 ALA B 933 O 91.6 REMARK 620 3 GOL B2088 O2 94.8 173.2 REMARK 620 4 GOL B2088 O3 87.2 112.2 70.3 REMARK 620 5 HOH B3197 O 168.7 90.3 83.8 81.8 REMARK 620 6 HOH B3198 O 88.9 98.2 79.9 149.4 101.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B2093 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 894 OE2 REMARK 620 2 HIS B1076 ND1 84.4 REMARK 620 3 GLU B1079 OE2 172.1 103.3 REMARK 620 4 GLU B1079 OE1 122.0 99.4 55.6 REMARK 620 5 HIS B1083 ND1 85.7 169.7 86.7 88.5 REMARK 620 6 HIS B1085 NE2 97.7 83.5 85.0 140.3 94.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B2095 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 947 NE2 REMARK 620 2 HIS B1080 NE2 90.1 REMARK 620 3 HOH B3216 O 115.1 152.2 REMARK 620 4 HOH B3217 O 91.7 104.4 87.3 REMARK 620 5 HOH B3342 O 93.7 100.3 68.1 154.8 REMARK 620 6 HOH B3350 O 179.1 89.0 65.7 88.7 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B2099 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B1076 O REMARK 620 2 HOH B3339 O 97.1 REMARK 620 3 HOH B3341 O 101.0 98.3 REMARK 620 4 HOH B3344 O 86.2 174.4 85.4 REMARK 620 5 HOH B3346 O 90.1 86.8 167.1 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B2097 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACY B2091 O REMARK 620 2 ACY B2091 OXT 54.6 REMARK 620 3 HOH B3357 O 152.9 152.4 REMARK 620 4 HOH B3378 O 108.5 82.8 85.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B2096 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B3355 O REMARK 620 2 HOH B3357 O 81.5 REMARK 620 3 HOH B3362 O 63.4 120.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2090 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2091 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2092 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2093 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2094 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2095 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2096 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2097 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2098 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A2099 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B2092 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B2093 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B2094 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B2095 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B2096 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B2097 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B2098 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B2099 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SXX A2086 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SXX B2086 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A2087 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A2088 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A2089 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B2087 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B2088 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B2089 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B2090 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B2091 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DYO RELATED DB: PDB REMARK 900 XYLAN-BINDING DOMAIN FROM CBM 22, FORMALLY X6B DOMAIN REMARK 900 RELATED ID: 1GKK RELATED DB: PDB REMARK 900 FERULOYL ESTERASE DOMAIN OF XYNY FROM CLOSTRIDIUM THERMOCELLUM REMARK 900 RELATED ID: 1GKL RELATED DB: PDB REMARK 900 S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM COMPLEXED WITH FERULIC ACID REMARK 900 RELATED ID: 1H6X RELATED DB: PDB REMARK 900 THE ROLE OF CONSERVED AMONI ACIDS IN THE CLEFT OF THE C-TERMINAL REMARK 900 FAMILY 22 CARBOHYDRATE BINDING MODULE OF CLOSTRIDIUM THERMOCELLUM REMARK 900 XYN10B IN LIGAND BINDING REMARK 900 RELATED ID: 1H6Y RELATED DB: PDB REMARK 900 THE ROLE OF CONSERVED AMONI ACIDS IN THE CLEFT OF THE C-TERMINAL REMARK 900 FAMILY 22 CARBOHYDRATE BINDING MODULE OF CLOSTRIDIUM THERMOCELLUM REMARK 900 XYN10B IN LIGAND BINDING REMARK 900 RELATED ID: 1OHZ RELATED DB: PDB REMARK 900 COHESIN-DOCKERIN COMPLEX FROM THE CELLULOSOME OF CLOSTRIDIUM REMARK 900 THERMOCELLUM REMARK 900 RELATED ID: 1WB5 RELATED DB: PDB REMARK 900 S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM COMPLEXED WITH SYRINGATE REMARK 900 RELATED ID: 1WB6 RELATED DB: PDB REMARK 900 S954A MUTANT OF THE FERULOYL ESTERASE MODULE FROM CLOSTRIDIUM REMARK 900 THERMOCELLUM COMPLEXED WITH VANILLATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 ONLY THE FERULOYL ESTERASE DOMAIN WAS SUBCLONED. S954A REMARK 999 MUTANT. THE SEQUENCE CONFLICTS (RESIDUES 1017 AND 1018) ARE REMARK 999 DUE TO ERRORS IN THE UNIPROT ENTRY FROM THE ORIGINAL REMARK 999 SEQUENCING OF THE PROTEIN. DBREF 1WB4 A 789 791 PDB 1WB4 1WB4 789 791 DBREF 1WB4 A 792 1077 UNP P51584 XYNY_CLOTM 792 1077 DBREF 1WB4 A 1078 1085 PDB 1WB4 1WB4 1078 1085 DBREF 1WB4 B 789 791 PDB 1WB4 1WB4 789 791 DBREF 1WB4 B 792 1077 UNP P51584 XYNY_CLOTM 792 1077 DBREF 1WB4 B 1078 1085 PDB 1WB4 1WB4 1078 1085 SEQADV 1WB4 ALA A 954 UNP P51584 SER 954 ENGINEERED MUTATION SEQADV 1WB4 GLU A 1017 UNP P51584 ASP 1017 CONFLICT SEQADV 1WB4 ASP A 1018 UNP P51584 HIS 1018 CONFLICT SEQADV 1WB4 ALA B 954 UNP P51584 SER 954 ENGINEERED MUTATION SEQADV 1WB4 GLU B 1017 UNP P51584 ASP 1017 CONFLICT SEQADV 1WB4 ASP B 1018 UNP P51584 HIS 1018 CONFLICT SEQRES 1 A 297 MET ALA SER ASP LYS PHE PRO VAL ALA GLU ASN PRO SER SEQRES 2 A 297 SER SER PHE LYS TYR GLU SER ALA VAL GLN TYR ARG PRO SEQRES 3 A 297 ALA PRO ASP SER TYR LEU ASN PRO CYS PRO GLN ALA GLY SEQRES 4 A 297 ARG ILE VAL LYS GLU THR TYR THR GLY ILE ASN GLY THR SEQRES 5 A 297 LYS SER LEU ASN VAL TYR LEU PRO TYR GLY TYR ASP PRO SEQRES 6 A 297 ASN LYS LYS TYR ASN ILE PHE TYR LEU MET HIS GLY GLY SEQRES 7 A 297 GLY GLU ASN GLU ASN THR ILE PHE SER ASN ASP VAL LYS SEQRES 8 A 297 LEU GLN ASN ILE LEU ASP HIS ALA ILE MET ASN GLY GLU SEQRES 9 A 297 LEU GLU PRO LEU ILE VAL VAL THR PRO THR PHE ASN GLY SEQRES 10 A 297 GLY ASN CYS THR ALA GLN ASN PHE TYR GLN GLU PHE ARG SEQRES 11 A 297 GLN ASN VAL ILE PRO PHE VAL GLU SER LYS TYR SER THR SEQRES 12 A 297 TYR ALA GLU SER THR THR PRO GLN GLY ILE ALA ALA SER SEQRES 13 A 297 ARG MET HIS ARG GLY PHE GLY GLY PHE ALA MET GLY GLY SEQRES 14 A 297 LEU THR THR TRP TYR VAL MET VAL ASN CYS LEU ASP TYR SEQRES 15 A 297 VAL ALA TYR PHE MET PRO LEU SER GLY ASP TYR TRP TYR SEQRES 16 A 297 GLY ASN SER PRO GLN ASP LYS ALA ASN SER ILE ALA GLU SEQRES 17 A 297 ALA ILE ASN ARG SER GLY LEU SER LYS ARG GLU TYR PHE SEQRES 18 A 297 VAL PHE ALA ALA THR GLY SER GLU ASP ILE ALA TYR ALA SEQRES 19 A 297 ASN MET ASN PRO GLN ILE GLU ALA MET LYS ALA LEU PRO SEQRES 20 A 297 HIS PHE ASP TYR THR SER ASP PHE SER LYS GLY ASN PHE SEQRES 21 A 297 TYR PHE LEU VAL ALA PRO GLY ALA THR HIS TRP TRP GLY SEQRES 22 A 297 TYR VAL ARG HIS TYR ILE TYR ASP ALA LEU PRO TYR PHE SEQRES 23 A 297 PHE HIS GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 297 MET ALA SER ASP LYS PHE PRO VAL ALA GLU ASN PRO SER SEQRES 2 B 297 SER SER PHE LYS TYR GLU SER ALA VAL GLN TYR ARG PRO SEQRES 3 B 297 ALA PRO ASP SER TYR LEU ASN PRO CYS PRO GLN ALA GLY SEQRES 4 B 297 ARG ILE VAL LYS GLU THR TYR THR GLY ILE ASN GLY THR SEQRES 5 B 297 LYS SER LEU ASN VAL TYR LEU PRO TYR GLY TYR ASP PRO SEQRES 6 B 297 ASN LYS LYS TYR ASN ILE PHE TYR LEU MET HIS GLY GLY SEQRES 7 B 297 GLY GLU ASN GLU ASN THR ILE PHE SER ASN ASP VAL LYS SEQRES 8 B 297 LEU GLN ASN ILE LEU ASP HIS ALA ILE MET ASN GLY GLU SEQRES 9 B 297 LEU GLU PRO LEU ILE VAL VAL THR PRO THR PHE ASN GLY SEQRES 10 B 297 GLY ASN CYS THR ALA GLN ASN PHE TYR GLN GLU PHE ARG SEQRES 11 B 297 GLN ASN VAL ILE PRO PHE VAL GLU SER LYS TYR SER THR SEQRES 12 B 297 TYR ALA GLU SER THR THR PRO GLN GLY ILE ALA ALA SER SEQRES 13 B 297 ARG MET HIS ARG GLY PHE GLY GLY PHE ALA MET GLY GLY SEQRES 14 B 297 LEU THR THR TRP TYR VAL MET VAL ASN CYS LEU ASP TYR SEQRES 15 B 297 VAL ALA TYR PHE MET PRO LEU SER GLY ASP TYR TRP TYR SEQRES 16 B 297 GLY ASN SER PRO GLN ASP LYS ALA ASN SER ILE ALA GLU SEQRES 17 B 297 ALA ILE ASN ARG SER GLY LEU SER LYS ARG GLU TYR PHE SEQRES 18 B 297 VAL PHE ALA ALA THR GLY SER GLU ASP ILE ALA TYR ALA SEQRES 19 B 297 ASN MET ASN PRO GLN ILE GLU ALA MET LYS ALA LEU PRO SEQRES 20 B 297 HIS PHE ASP TYR THR SER ASP PHE SER LYS GLY ASN PHE SEQRES 21 B 297 TYR PHE LEU VAL ALA PRO GLY ALA THR HIS TRP TRP GLY SEQRES 22 B 297 TYR VAL ARG HIS TYR ILE TYR ASP ALA LEU PRO TYR PHE SEQRES 23 B 297 PHE HIS GLU LEU GLU HIS HIS HIS HIS HIS HIS HET SXX A2086 16 HET GOL A2087 6 HET GOL A2088 6 HET ACY A2089 4 HET CD A2090 1 HET CD A2091 1 HET CD A2092 1 HET CD A2093 1 HET CD A2094 1 HET CD A2095 1 HET CD A2096 1 HET CD A2097 1 HET CD A2098 1 HET CD A2099 1 HET SXX B2086 16 HET GOL B2087 6 HET GOL B2088 6 HET GOL B2089 6 HET GOL B2090 6 HET ACY B2091 4 HET CD B2092 1 HET CD B2093 1 HET CD B2094 1 HET CD B2095 1 HET CD B2096 1 HET CD B2097 1 HET CD B2098 1 HET CD B2099 1 HETNAM SXX SINAPINATE HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETNAM CD CADMIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SXX 2(C11 H12 O5) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 6 ACY 2(C2 H4 O2) FORMUL 7 CD 18(CD 2+) FORMUL 31 HOH *750(H2 O) HELIX 1 1 PRO A 816 ASN A 821 5 6 HELIX 2 2 LYS A 879 ASN A 890 1 12 HELIX 3 3 ASN A 912 ASN A 920 1 9 HELIX 4 4 ASN A 920 TYR A 929 1 10 HELIX 5 5 THR A 937 ALA A 943 1 7 HELIX 6 6 SER A 944 MET A 946 5 3 HELIX 7 7 ALA A 954 LEU A 968 1 15 HELIX 8 8 SER A 986 GLY A 1002 1 17 HELIX 9 9 ALA A 1020 ALA A 1033 1 14 HELIX 10 10 TRP A 1059 LEU A 1071 1 13 HELIX 11 11 PRO A 1072 PHE A 1074 5 3 HELIX 12 12 PRO B 816 ASN B 821 5 6 HELIX 13 13 LYS B 879 ASN B 890 1 12 HELIX 14 14 ASN B 912 ASN B 920 1 9 HELIX 15 15 ASN B 920 TYR B 929 1 10 HELIX 16 16 THR B 937 SER B 944 1 8 HELIX 17 17 ALA B 954 LEU B 968 1 15 HELIX 18 18 SER B 986 GLY B 1002 1 17 HELIX 19 19 ALA B 1020 ALA B 1033 1 14 HELIX 20 20 TRP B 1059 LEU B 1071 1 13 HELIX 21 21 PRO B 1072 PHE B 1074 5 3 SHEET 1 AA 8 ARG A 828 GLY A 836 0 SHEET 2 AA 8 GLY A 839 LEU A 847 -1 O GLY A 839 N GLY A 836 SHEET 3 AA 8 LEU A 896 THR A 900 -1 O VAL A 898 N TYR A 846 SHEET 4 AA 8 ASN A 858 MET A 863 1 O ASN A 858 N ILE A 897 SHEET 5 AA 8 ARG A 948 PHE A 953 1 O GLY A 949 N TYR A 861 SHEET 6 AA 8 TYR A 973 LEU A 977 1 O TYR A 973 N PHE A 950 SHEET 7 AA 8 PHE A1009 GLY A1015 1 O PHE A1009 N PHE A 974 SHEET 8 AA 8 PHE A1048 ALA A1053 1 O TYR A1049 N ALA A1012 SHEET 1 BA 8 ARG B 828 GLY B 836 0 SHEET 2 BA 8 GLY B 839 LEU B 847 -1 O GLY B 839 N GLY B 836 SHEET 3 BA 8 LEU B 896 THR B 900 -1 O VAL B 898 N TYR B 846 SHEET 4 BA 8 ASN B 858 MET B 863 1 O ASN B 858 N ILE B 897 SHEET 5 BA 8 ARG B 948 PHE B 953 1 O GLY B 949 N TYR B 861 SHEET 6 BA 8 TYR B 973 LEU B 977 1 O TYR B 973 N PHE B 950 SHEET 7 BA 8 PHE B1009 GLY B1015 1 O PHE B1009 N PHE B 974 SHEET 8 BA 8 PHE B1048 ALA B1053 1 O TYR B1049 N ALA B1012 LINK SG CYS A 823 CD CD A2090 1555 1555 2.53 LINK ND1 HIS A 886 CD CD A2090 1555 1555 2.35 LINK SD MET A 889 CD CD A2090 1555 1555 2.82 LINK OE2 GLU A 894 CD CD A2091 1555 1555 2.34 LINK O GLU A 926 CD CD A2097 1555 1555 2.23 LINK O TYR A 929 CD CD A2097 1555 1555 2.40 LINK NE2 HIS A 947 CD CD A2093 1555 1555 2.24 LINK O ASN A 985 CD CD A2098 1555 1555 2.34 LINK OE1 GLU A1007 CD CD A2092 1555 1555 2.38 LINK OE2 GLU A1007 CD CD A2092 1555 1555 2.36 LINK OE2 GLU A1017 CD CD B2092 3545 1555 2.49 LINK OE1 GLU A1017 CD CD B2092 3545 1555 2.30 LINK ND1 HIS A1076 CD CD A2091 1555 1555 2.34 LINK O HIS A1076 CD CD A2096 1555 1555 2.36 LINK OE1 GLU A1079 CD CD A2091 1555 1555 2.33 LINK OE2 GLU A1079 CD CD A2091 1555 1555 2.46 LINK NE2 HIS A1080 CD CD A2093 1555 1555 2.19 LINK ND1 HIS A1081 CD CD A2094 1555 1555 1.44 LINK NE2 HIS A1082 CD CD B2094 1455 1555 2.28 LINK ND1 HIS A1083 CD CD A2091 1555 1555 2.36 LINK NE2 HIS A1084 CD CD B2094 1455 1555 2.28 LINK NE2 HIS A1085 CD CD A2091 1555 1555 2.33 LINK O ACY A2089 CD CD A2095 1555 1555 2.36 LINK OXT ACY A2089 CD CD A2095 1555 1555 2.55 LINK CD CD A2090 O HOH A3157 1555 1555 2.36 LINK CD CD A2090 OE1 GLU B1017 1555 2574 2.28 LINK CD CD A2090 OE2 GLU B1017 1555 2574 2.59 LINK CD CD A2092 O HOH A3259 1555 1555 2.33 LINK CD CD A2092 NE2 HIS B1082 1555 1655 2.30 LINK CD CD A2092 NE2 HIS B1084 1555 1655 2.26 LINK CD CD A2092 O HOH B3364 1555 1655 2.44 LINK CD CD A2093 O HOH A3218 1555 1555 2.41 LINK CD CD A2093 O HOH A3331 1555 1555 2.40 LINK CD CD A2093 O HOH A3341 1555 1555 2.34 LINK CD CD A2094 O HOH A3347 1555 1555 1.96 LINK CD CD A2094 O HOH A3353 1555 1555 2.75 LINK CD CD A2095 O HOH A3369 1555 1555 2.64 LINK CD CD A2096 O HOH A3326 1555 1555 2.56 LINK CD CD A2096 O HOH A3332 1555 1555 2.48 LINK CD CD A2096 O HOH A3335 1555 1555 2.30 LINK CD CD A2096 O HOH A3336 1555 1555 2.38 LINK CD CD A2097 O HOH A3193 1555 1555 2.30 LINK CD CD A2097 O HOH A3197 1555 1555 2.43 LINK CD CD A2097 O HOH A3202 1555 1555 2.46 LINK CD CD A2097 O HOH A3203 1555 1555 2.23 LINK CD CD A2098 O HOH A3229 1555 1555 2.27 LINK CD CD A2098 O HOH B3096 1555 1555 2.10 LINK CD CD A2098 O HOH B3234 1555 1555 2.44 LINK CD CD A2099 O HOH A3193 1555 4465 2.49 LINK CD CD A2099 O HOH A3197 1555 4465 2.38 LINK CD CD A2099 O HOH A3202 1555 4465 2.40 LINK CD CD A2099 O HOH A3206 1555 4465 2.51 LINK CD CD A2099 O HOH B3209 1555 1555 2.29 LINK CD CD A2099 O HOH B3376 1555 1555 2.30 LINK O HOH A3194 CD CD B2098 4465 1555 2.37 LINK O HOH A3354 CD CD B2094 1455 1555 2.39 LINK SG CYS B 823 CD CD B2092 1555 1555 2.51 LINK ND1 HIS B 886 CD CD B2092 1555 1555 2.35 LINK SD MET B 889 CD CD B2092 1555 1555 2.85 LINK OE2 GLU B 894 CD CD B2093 1555 1555 2.31 LINK O ALA B 933 CD CD B2098 1555 1555 2.29 LINK NE2 HIS B 947 CD CD B2095 1555 1555 2.26 LINK OE1 GLU B1007 CD CD B2094 1555 1555 2.43 LINK OE2 GLU B1007 CD CD B2094 1555 1555 2.31 LINK ND1 HIS B1076 CD CD B2093 1555 1555 2.34 LINK O HIS B1076 CD CD B2099 1555 1555 2.43 LINK OE2 GLU B1079 CD CD B2093 1555 1555 2.46 LINK OE1 GLU B1079 CD CD B2093 1555 1555 2.36 LINK NE2 HIS B1080 CD CD B2095 1555 1555 2.18 LINK ND1 HIS B1083 CD CD B2093 1555 1555 2.32 LINK NE2 HIS B1085 CD CD B2093 1555 1555 2.29 LINK O2 GOL B2088 CD CD B2098 1555 1555 2.42 LINK O3 GOL B2088 CD CD B2098 1555 1555 2.51 LINK O ACY B2091 CD CD B2097 1555 1555 2.31 LINK OXT ACY B2091 CD CD B2097 1555 1555 2.48 LINK CD CD B2092 O HOH B3157 1555 1555 2.36 LINK CD CD B2094 O HOH B3264 1555 1555 2.38 LINK CD CD B2095 O HOH B3216 1555 1555 2.35 LINK CD CD B2095 O HOH B3217 1555 1555 2.44 LINK CD CD B2095 O HOH B3342 1555 1555 2.36 LINK CD CD B2095 O HOH B3350 1555 1555 2.30 LINK CD CD B2096 O HOH B3355 1555 1555 2.07 LINK CD CD B2096 O HOH B3357 1555 1555 2.44 LINK CD CD B2096 O HOH B3362 1555 1555 2.70 LINK CD CD B2097 O HOH B3357 1555 1555 2.48 LINK CD CD B2097 O HOH B3378 1555 1555 1.98 LINK CD CD B2098 O HOH B3197 1555 1555 2.32 LINK CD CD B2098 O HOH B3198 1555 1555 2.42 LINK CD CD B2099 O HOH B3339 1555 1555 2.39 LINK CD CD B2099 O HOH B3341 1555 1555 2.52 LINK CD CD B2099 O HOH B3344 1555 1555 2.40 LINK CD CD B2099 O HOH B3346 1555 1555 2.46 SITE 1 AC1 5 CYS A 823 HIS A 886 MET A 889 HOH A3157 SITE 2 AC1 5 GLU B1017 SITE 1 AC2 5 GLU A 894 HIS A1076 GLU A1079 HIS A1083 SITE 2 AC2 5 HIS A1085 SITE 1 AC3 5 GLU A1007 HOH A3259 HIS B1082 HIS B1084 SITE 2 AC3 5 HOH B3364 SITE 1 AC4 5 HIS A 947 HIS A1080 HOH A3218 HOH A3331 SITE 2 AC4 5 HOH A3341 SITE 1 AC5 4 HIS A1081 CD A2095 HOH A3347 HOH A3353 SITE 1 AC6 4 HIS A1081 ACY A2089 CD A2094 HOH A3369 SITE 1 AC7 5 HIS A1076 HOH A3326 HOH A3332 HOH A3335 SITE 2 AC7 5 HOH A3336 SITE 1 AC8 7 GLU A 926 TYR A 929 CD A2099 HOH A3193 SITE 2 AC8 7 HOH A3197 HOH A3202 HOH A3203 SITE 1 AC9 4 ASN A 985 HOH A3229 HOH B3096 HOH B3234 SITE 1 BC1 7 CD A2097 HOH A3193 HOH A3197 HOH A3202 SITE 2 BC1 7 HOH A3206 HOH B3209 HOH B3376 SITE 1 BC2 5 GLU A1017 CYS B 823 HIS B 886 MET B 889 SITE 2 BC2 5 HOH B3157 SITE 1 BC3 5 GLU B 894 HIS B1076 GLU B1079 HIS B1083 SITE 2 BC3 5 HIS B1085 SITE 1 BC4 5 HIS A1082 HIS A1084 HOH A3354 GLU B1007 SITE 2 BC4 5 HOH B3264 SITE 1 BC5 6 HIS B 947 HIS B1080 HOH B3216 HOH B3217 SITE 2 BC5 6 HOH B3342 HOH B3350 SITE 1 BC6 5 HIS B1081 CD B2097 HOH B3355 HOH B3357 SITE 2 BC6 5 HOH B3362 SITE 1 BC7 5 HIS B1081 ACY B2091 CD B2096 HOH B3357 SITE 2 BC7 5 HOH B3378 SITE 1 BC8 5 HOH A3194 ALA B 933 GOL B2088 HOH B3197 SITE 2 BC8 5 HOH B3198 SITE 1 BC9 5 HIS B1076 HOH B3339 HOH B3341 HOH B3344 SITE 2 BC9 5 HOH B3346 SITE 1 CC1 11 ALA A 954 MET A 955 LEU A 958 GLY A 979 SITE 2 CC1 11 ASP A 980 TRP A 982 ALA A1020 ASN A1023 SITE 3 CC1 11 HOH A3272 HOH A3365 HOH A3366 SITE 1 CC2 10 MET B 955 LEU B 958 GLY B 979 ASP B 980 SITE 2 CC2 10 TRP B 982 ALA B1020 ASN B1023 GOL B2087 SITE 3 CC2 10 HOH B3373 HOH B3374 SITE 1 CC3 8 GLY A 865 GLY A 866 GLU A 868 PHE A 953 SITE 2 CC3 8 ALA A 954 HIS A1058 HOH A3366 HOH A3367 SITE 1 CC4 8 LYS A 856 TYR A 857 ASN A 858 GLU A 894 SITE 2 CC4 8 PRO A 895 TYR A 932 HIS A1081 HOH A3368 SITE 1 CC5 6 LYS A 856 TYR A 857 HIS A1081 CD A2095 SITE 2 CC5 6 HOH A3370 HOH A3371 SITE 1 CC6 9 GLY B 865 GLY B 866 GLU B 868 PHE B 953 SITE 2 CC6 9 ALA B 954 HIS B1058 SXX B2086 HOH B3373 SITE 3 CC6 9 HOH B3375 SITE 1 CC7 11 SER A 927 LYS A 928 GLU B 926 SER B 927 SITE 2 CC7 11 LYS B 928 TYR B 929 SER B 930 CD B2098 SITE 3 CC7 11 HOH B3195 HOH B3196 HOH B3376 SITE 1 CC8 8 ILE A 837 ASN A 838 ASN A 907 ASN A 912 SITE 2 CC8 8 GLN B 915 ASN B 966 HOH B3183 HOH B3377 SITE 1 CC9 7 LYS B 856 TYR B 857 ASN B 858 GLU B 894 SITE 2 CC9 7 PRO B 895 TYR B 932 HIS B1081 SITE 1 DC1 7 LYS B 856 TYR B 857 HIS B1081 CD B2097 SITE 2 DC1 7 HOH B3113 HOH B3378 HOH B3379 CRYST1 65.066 108.405 113.180 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008835 0.00000