HEADER RNA-BINDING PROTEIN 17-NOV-04 1WCL TITLE NMR STRUCTURE OF THE CARBOXYTERMINAL DOMAINS OF ESCHERICHIA COLI NUSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION PROTEIN NUSA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ACIDIC REPEAT 1, RESIDUES 351-426; COMPND 5 SYNONYM: N UTILIZATION SUBSTANCE PROTEIN A, L FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PTKK19 KEYWDS RNA-BINDING PROTEIN, ESCHERICHIA COLI NUSA, TRANSCRIPTION REGULATION, KEYWDS 2 REGULATION OF RNA BINDING, TRANSCRIPTION ANTITERMINATION AND KEYWDS 3 TERMINATION, C-TERMINAL REPEAT UNITS EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR A.EISENMANN,S.SCHWARZ,K.SCHWEIMER,P.ROESCH REVDAT 3 19-APR-17 1WCL 1 REMARK REVDAT 2 24-FEB-09 1WCL 1 VERSN REVDAT 1 31-AUG-05 1WCL 0 JRNL AUTH A.EISENMANN,S.SCHWARZ,S.PRASCH,K.SCHWEIMER,P.ROESCH JRNL TITL THE E. COLI NUSA CARBOXY-TERMINAL DOMAINS ARE STRUCTURALLY JRNL TITL 2 SIMILAR AND SHOW SPECIFIC RNAP- AND LAMBDAN INTERACTIONS JRNL REF PROTEIN SCI. V. 14 2018 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15987884 JRNL DOI 10.1110/PS.051372205 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR-NIH 1.2.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN JRNL REMARK 3 CITATION ABOVE REMARK 4 REMARK 4 1WCL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-NOV-04. REMARK 100 THE PDBE ID CODE IS EBI-21617. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SEE PUBLICATION REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ; 700 MHZ; 800 MHZ; 600 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW5.0.4 REMARK 210 METHOD USED : MANUAL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 90 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C,15N LABELED GP-NUSA(339-495) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 PARTICIPATES IN BOTH THE TERMINATION AND ANTITERMINATION REMARK 400 OF TRANSCRIPTION. NUSA BINDS DIRECTLY TO THE CORE ENZYME REMARK 400 OF THE DNA-DEPENDENT RNA POLYMERASE. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 371 H GLU A 375 1.45 REMARK 500 O GLU A 382 H TYR A 386 1.48 REMARK 500 O ARG A 409 H ALA A 413 1.52 REMARK 500 O MET A 389 H LEU A 393 1.54 REMARK 500 O THR A 416 H GLN A 419 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 362 -64.18 -101.82 REMARK 500 1 ILE A 395 -33.44 -34.48 REMARK 500 1 GLU A 396 -92.10 -177.53 REMARK 500 2 TYR A 362 -64.87 -95.03 REMARK 500 2 ILE A 365 -166.22 -120.78 REMARK 500 2 ILE A 395 -34.74 -33.06 REMARK 500 2 GLU A 396 -90.87 -178.74 REMARK 500 3 TYR A 362 -66.53 -102.99 REMARK 500 3 ILE A 365 -169.27 -121.93 REMARK 500 3 ILE A 395 -33.95 -34.18 REMARK 500 3 GLU A 396 -95.71 -176.21 REMARK 500 3 ALA A 410 -72.19 -44.61 REMARK 500 4 TYR A 362 -60.33 -101.31 REMARK 500 4 ILE A 395 -35.80 -32.61 REMARK 500 4 GLU A 396 -83.64 -176.52 REMARK 500 5 TYR A 362 -65.46 -100.98 REMARK 500 5 GLU A 396 -116.41 -162.01 REMARK 500 6 TYR A 362 -62.99 -104.81 REMARK 500 6 GLU A 396 -107.68 -169.74 REMARK 500 7 TYR A 362 -64.27 -101.69 REMARK 500 7 ILE A 395 -35.60 -32.78 REMARK 500 7 GLU A 396 -83.85 -176.33 REMARK 500 8 TYR A 362 -66.37 -100.50 REMARK 500 8 ILE A 395 -37.01 -33.09 REMARK 500 8 GLU A 396 -89.62 -174.72 REMARK 500 9 ILE A 365 -164.90 -125.96 REMARK 500 9 ILE A 395 -29.93 -38.65 REMARK 500 9 GLU A 396 -105.91 -170.71 REMARK 500 9 ALA A 410 -71.19 -42.33 REMARK 500 10 TYR A 362 -62.46 -102.68 REMARK 500 10 ILE A 365 -166.49 -123.53 REMARK 500 10 ILE A 395 -35.80 -32.62 REMARK 500 10 GLU A 396 -90.40 -174.14 REMARK 500 11 TYR A 362 -69.25 -99.28 REMARK 500 11 GLU A 396 -115.93 -165.46 REMARK 500 12 ILE A 365 -169.13 -125.41 REMARK 500 12 ILE A 395 -37.19 -32.43 REMARK 500 12 GLU A 396 -80.43 -172.23 REMARK 500 13 TYR A 362 -64.11 -102.63 REMARK 500 13 GLU A 396 -112.52 -163.32 REMARK 500 14 ILE A 395 -35.90 -32.12 REMARK 500 14 GLU A 396 -86.50 -173.85 REMARK 500 15 TYR A 362 -71.94 -100.31 REMARK 500 15 ILE A 365 -168.55 -122.53 REMARK 500 15 ILE A 395 -34.94 -33.19 REMARK 500 15 GLU A 396 -98.86 -175.76 REMARK 500 16 TYR A 362 -66.47 -100.21 REMARK 500 16 ILE A 365 -169.05 -126.23 REMARK 500 16 ILE A 395 -34.21 -33.59 REMARK 500 16 GLU A 396 -90.02 -175.49 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 407 0.19 SIDE CHAIN REMARK 500 1 ARG A 409 0.16 SIDE CHAIN REMARK 500 2 ARG A 407 0.24 SIDE CHAIN REMARK 500 2 ARG A 409 0.21 SIDE CHAIN REMARK 500 3 ARG A 407 0.32 SIDE CHAIN REMARK 500 3 ARG A 409 0.32 SIDE CHAIN REMARK 500 4 ARG A 407 0.21 SIDE CHAIN REMARK 500 4 ARG A 409 0.14 SIDE CHAIN REMARK 500 5 ARG A 407 0.15 SIDE CHAIN REMARK 500 5 ARG A 409 0.10 SIDE CHAIN REMARK 500 6 ARG A 407 0.17 SIDE CHAIN REMARK 500 6 ARG A 409 0.30 SIDE CHAIN REMARK 500 7 ARG A 407 0.15 SIDE CHAIN REMARK 500 7 ARG A 409 0.16 SIDE CHAIN REMARK 500 8 ARG A 407 0.31 SIDE CHAIN REMARK 500 8 ARG A 409 0.29 SIDE CHAIN REMARK 500 9 ARG A 407 0.26 SIDE CHAIN REMARK 500 9 ARG A 409 0.24 SIDE CHAIN REMARK 500 10 ARG A 407 0.20 SIDE CHAIN REMARK 500 10 ARG A 409 0.25 SIDE CHAIN REMARK 500 11 ARG A 407 0.28 SIDE CHAIN REMARK 500 11 ARG A 409 0.30 SIDE CHAIN REMARK 500 12 ARG A 407 0.15 SIDE CHAIN REMARK 500 12 ARG A 409 0.23 SIDE CHAIN REMARK 500 13 ARG A 407 0.29 SIDE CHAIN REMARK 500 13 ARG A 409 0.19 SIDE CHAIN REMARK 500 14 ARG A 407 0.30 SIDE CHAIN REMARK 500 14 ARG A 409 0.18 SIDE CHAIN REMARK 500 15 ARG A 407 0.28 SIDE CHAIN REMARK 500 15 ARG A 409 0.32 SIDE CHAIN REMARK 500 16 ARG A 407 0.23 SIDE CHAIN REMARK 500 16 ARG A 409 0.21 SIDE CHAIN REMARK 500 17 ARG A 407 0.14 SIDE CHAIN REMARK 500 17 ARG A 409 0.29 SIDE CHAIN REMARK 500 18 ARG A 407 0.11 SIDE CHAIN REMARK 500 18 ARG A 409 0.27 SIDE CHAIN REMARK 500 19 ARG A 407 0.31 SIDE CHAIN REMARK 500 19 ARG A 409 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U9L RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR A NUSA- PROTEIN N INTERACTION REMARK 900 RELATED ID: 1WCN RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE CARBOXYTERMINAL DOMAINS OF ESCHERICHIA COLI REMARK 900 NUSA DBREF 1WCL A 351 426 UNP P03003 NUSA_ECOLI 351 426 SEQRES 1 A 76 GLU ALA HIS ALA ALA ILE ASP THR PHE THR LYS TYR LEU SEQRES 2 A 76 ASP ILE ASP GLU ASP PHE ALA THR VAL LEU VAL GLU GLU SEQRES 3 A 76 GLY PHE SER THR LEU GLU GLU LEU ALA TYR VAL PRO MET SEQRES 4 A 76 LYS GLU LEU LEU GLU ILE GLU GLY LEU ASP GLU PRO THR SEQRES 5 A 76 VAL GLU ALA LEU ARG GLU ARG ALA LYS ASN ALA LEU ALA SEQRES 6 A 76 THR ILE ALA GLN ALA GLN GLU GLU SER LEU GLY HELIX 1 1 HIS A 353 TYR A 362 1 10 HELIX 2 2 GLU A 367 GLU A 376 1 10 HELIX 3 3 LEU A 381 TYR A 386 1 6 HELIX 4 4 MET A 389 GLU A 394 1 6 HELIX 5 5 GLU A 400 THR A 416 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1