HEADER LYASE 13-MAY-04 1WDD TITLE CRYSTAL STRUCTURE OF ACTIVATED RICE RUBISCO COMPLEXED WITH 2- TITLE 2 CARBOXYARABINITOL-1,5-BISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: LARGE SUBUNIT OF RIBULOSE-1,5-BISPHOSPHATE COMPND 5 CARBOXYLASE/OXYGENASE, RUBISCO LARGE SUBUNIT; COMPND 6 EC: 4.1.1.39; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN C; COMPND 9 CHAIN: S, W; COMPND 10 SYNONYM: SMALL SUBUNIT OF RIBULOSE-1,5-BISPHOSPHATE COMPND 11 CARBOXYLASE/OXYGENASE, RUBISCO SMALL SUBUNIT C; COMPND 12 EC: 4.1.1.39 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 TISSUE: LEAVES; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 8 ORGANISM_COMMON: JAPANESE RICE; SOURCE 9 ORGANISM_TAXID: 39947; SOURCE 10 TISSUE: LEAVES KEYWDS RUBISCO, PHOTOSYNTHESIS, ALPHA/BETA BARREL, N-METHYLMETHIONINE, POST- KEYWDS 2 TRANSLATIONAL MODIFICATION, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MIZOHATA,H.MATSUMURA,T.UENO,H.ISHIDA,T.INOUE,A.MAKINO,T.MAE,Y.KAI REVDAT 7 15-NOV-23 1WDD 1 REMARK REVDAT 6 25-OCT-23 1WDD 1 REMARK LINK REVDAT 5 05-JUN-13 1WDD 1 JRNL REVDAT 4 13-JUN-12 1WDD 1 JRNL REVDAT 3 13-JUL-11 1WDD 1 VERSN REVDAT 2 24-FEB-09 1WDD 1 VERSN REVDAT 1 13-NOV-04 1WDD 0 JRNL AUTH H.MATSUMURA,E.MIZOHATA,H.ISHIDA,A.KOGAMI,T.UENO,A.MAKINO, JRNL AUTH 2 T.INOUE,A.YOKOTA,T.MAE,Y.KAI JRNL TITL CRYSTAL STRUCTURE OF RICE RUBISCO AND IMPLICATIONS FOR JRNL TITL 2 ACTIVATION INDUCED BY POSITIVE EFFECTORS NADPH AND JRNL TITL 3 6-PHOSPHOGLUCONATE JRNL REF J.MOL.BIOL. V. 422 75 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22609438 JRNL DOI 10.1016/J.JMB.2012.05.014 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3255293.900 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 255778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 12745 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 35111 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1825 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 999 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.24000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : -2.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.430 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 88.98 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000023455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.85650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.85650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 98.39000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.85650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.85650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.39000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 55.85650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.85650 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 98.39000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 55.85650 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 55.85650 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 98.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 131610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 111360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -549.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, S, E, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 111.71300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 111.71300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 111.71300 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 111.71300 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH S 247 LIES ON A SPECIAL POSITION. REMARK 375 HOH W 937 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 ASP A 476 REMARK 465 SER A 477 REMARK 465 GLU S 123 REMARK 465 GLU S 124 REMARK 465 SER S 125 REMARK 465 GLY S 126 REMARK 465 GLY S 127 REMARK 465 ASN S 128 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 PRO E 3 REMARK 465 GLN E 4 REMARK 465 THR E 5 REMARK 465 GLU E 6 REMARK 465 THR E 7 REMARK 465 LYS E 8 REMARK 465 ALA E 9 REMARK 465 SER E 10 REMARK 465 VAL E 11 REMARK 465 ASP E 476 REMARK 465 SER E 477 REMARK 465 GLU W 123 REMARK 465 GLU W 124 REMARK 465 SER W 125 REMARK 465 GLY W 126 REMARK 465 GLY W 127 REMARK 465 ASN W 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3299 O HOH A 3362 1.84 REMARK 500 O HOH A 3299 O HOH A 3300 1.87 REMARK 500 O HOH A 3365 O HOH S 215 2.02 REMARK 500 O HOH A 3306 O HOH A 3409 2.03 REMARK 500 OD2 ASP W 25 O HOH W 935 2.03 REMARK 500 O HOH A 3085 O HOH E 3376 2.05 REMARK 500 NZ LYS E 356 O HOH E 3356 2.06 REMARK 500 O HOH A 3358 O HOH A 3369 2.07 REMARK 500 O HOH A 3165 O HOH A 3407 2.08 REMARK 500 ND2 ASN E 95 O HOH E 3315 2.09 REMARK 500 O HOH A 3024 O HOH A 3402 2.09 REMARK 500 O HOH A 3282 O HOH A 3352 2.09 REMARK 500 O HOH W 753 O HOH W 972 2.09 REMARK 500 OD2 ASP S 25 O HOH S 192 2.10 REMARK 500 O1 GOL E 3002 O HOH E 3375 2.10 REMARK 500 O HOH A 3375 O HOH E 3018 2.10 REMARK 500 NZ LYS W 84 OE1 GLU W 88 2.15 REMARK 500 O HOH S 223 O HOH S 232 2.16 REMARK 500 O HOH E 3205 O HOH E 3262 2.16 REMARK 500 O HOH A 3170 O HOH A 3394 2.17 REMARK 500 O HOH E 3353 O HOH E 3354 2.17 REMARK 500 O HOH W 483 O HOH W 863 2.17 REMARK 500 O HOH A 3292 O HOH A 3361 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU W 7 NZ LYS W 46 4565 1.91 REMARK 500 O HOH A 3321 O HOH E 3375 4565 1.94 REMARK 500 O HOH E 3249 O HOH E 3352 4565 2.02 REMARK 500 OE2 GLU W 24 O HOH S 192 6555 2.08 REMARK 500 O HOH E 3320 O HOH W 693 4565 2.10 REMARK 500 O HOH A 3266 O HOH E 3363 3555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 187 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG E 159 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG E 303 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 62 -74.95 -143.02 REMARK 500 ASN A 95 39.28 -146.11 REMARK 500 HIS A 153 -55.14 -133.17 REMARK 500 CYS A 172 128.19 -177.08 REMARK 500 ASN A 207 -93.72 -125.30 REMARK 500 MET A 212 112.87 -170.73 REMARK 500 MET A 297 -6.48 82.70 REMARK 500 VAL A 331 -53.04 73.23 REMARK 500 ASP A 357 90.12 -162.64 REMARK 500 VAL A 369 53.58 36.12 REMARK 500 GLU S 13 -145.69 63.96 REMARK 500 LEU S 15 -4.60 88.29 REMARK 500 LYS S 37 30.18 73.18 REMARK 500 LYS S 70 -126.49 55.78 REMARK 500 SER E 62 -78.40 -141.05 REMARK 500 THR E 75 -162.82 -128.43 REMARK 500 HIS E 153 -58.37 -132.20 REMARK 500 CYS E 172 125.61 -176.09 REMARK 500 ASN E 207 -91.33 -125.70 REMARK 500 MET E 212 112.40 -170.09 REMARK 500 MET E 297 -4.85 88.22 REMARK 500 VAL E 331 -51.78 70.65 REMARK 500 ASP E 357 94.16 -161.29 REMARK 500 VAL E 369 56.78 34.57 REMARK 500 GLU W 13 -146.64 62.34 REMARK 500 LEU W 15 -8.52 83.68 REMARK 500 LYS W 70 -128.68 56.78 REMARK 500 SER W 113 119.42 -165.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR S 60 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1476 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 201 OQ2 REMARK 620 2 ASP A 203 OD1 86.6 REMARK 620 3 GLU A 204 OE1 93.7 91.8 REMARK 620 4 CAP A1001 O2 92.3 106.4 161.2 REMARK 620 5 CAP A1001 O3 86.7 173.4 89.0 73.6 REMARK 620 6 CAP A1001 O6 167.0 98.6 98.0 74.7 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E2476 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX E 201 OQ2 REMARK 620 2 ASP E 203 OD1 85.4 REMARK 620 3 GLU E 204 OE1 93.7 94.1 REMARK 620 4 CAP E2001 O6 166.2 99.0 98.9 REMARK 620 5 CAP E2001 O2 92.1 104.5 160.9 74.1 REMARK 620 6 CAP E2001 O3 85.8 170.9 89.0 89.0 73.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 2476 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAP E 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 3005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL W 3007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL W 3008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 3009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 3011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3012 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 3013 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 3014 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3015 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 3016 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3017 DBREF 1WDD A 1 477 UNP P0C512 RBL_ORYSJ 1 477 DBREF 1WDD S 1 128 UNP Q0INY7 RBS1_ORYSJ 48 175 DBREF 1WDD E 1 477 UNP P0C512 RBL_ORYSJ 1 477 DBREF 1WDD W 1 128 UNP Q0INY7 RBS1_ORYSJ 48 175 SEQRES 1 A 477 MET SER PRO GLN THR GLU THR LYS ALA SER VAL GLY PHE SEQRES 2 A 477 LYS ALA GLY VAL LYS ASP TYR LYS LEU THR TYR TYR THR SEQRES 3 A 477 PRO GLU TYR GLU THR LYS ASP THR ASP ILE LEU ALA ALA SEQRES 4 A 477 PHE ARG VAL THR PRO GLN PRO GLY VAL PRO PRO GLU GLU SEQRES 5 A 477 ALA GLY ALA ALA VAL ALA ALA GLU SER SER THR GLY THR SEQRES 6 A 477 TRP THR THR VAL TRP THR ASP GLY LEU THR SER LEU ASP SEQRES 7 A 477 ARG TYR LYS GLY ARG CYS TYR HIS ILE GLU PRO VAL VAL SEQRES 8 A 477 GLY GLU ASP ASN GLN TYR ILE ALA TYR VAL ALA TYR PRO SEQRES 9 A 477 LEU ASP LEU PHE GLU GLU GLY SER VAL THR ASN MET PHE SEQRES 10 A 477 THR SER ILE VAL GLY ASN VAL PHE GLY PHE LYS ALA LEU SEQRES 11 A 477 ARG ALA LEU ARG LEU GLU ASP LEU ARG ILE PRO PRO THR SEQRES 12 A 477 TYR SER LYS THR PHE GLN GLY PRO PRO HIS GLY ILE GLN SEQRES 13 A 477 VAL GLU ARG ASP LYS LEU ASN LYS TYR GLY ARG PRO LEU SEQRES 14 A 477 LEU GLY CYS THR ILE LYS PRO LYS LEU GLY LEU SER ALA SEQRES 15 A 477 LYS ASN TYR GLY ARG ALA CYS TYR GLU CYS LEU ARG GLY SEQRES 16 A 477 GLY LEU ASP PHE THR KCX ASP ASP GLU ASN VAL ASN SER SEQRES 17 A 477 GLN PRO PHE MET ARG TRP ARG ASP ARG PHE VAL PHE CYS SEQRES 18 A 477 ALA GLU ALA ILE TYR LYS SER GLN ALA GLU THR GLY GLU SEQRES 19 A 477 ILE LYS GLY HIS TYR LEU ASN ALA THR ALA GLY THR CYS SEQRES 20 A 477 GLU GLU MET ILE LYS ARG ALA VAL PHE ALA ARG GLU LEU SEQRES 21 A 477 GLY VAL PRO ILE VAL MET HIS ASP TYR LEU THR GLY GLY SEQRES 22 A 477 PHE THR ALA ASN THR SER LEU ALA HIS TYR CYS ARG ASP SEQRES 23 A 477 ASN GLY LEU LEU LEU HIS ILE HIS ARG ALA MET HIS ALA SEQRES 24 A 477 VAL ILE ASP ARG GLN LYS ASN HIS GLY MET HIS PHE ARG SEQRES 25 A 477 VAL LEU ALA LYS ALA LEU ARG MET SER GLY GLY ASP HIS SEQRES 26 A 477 ILE HIS ALA GLY THR VAL VAL GLY LYS LEU GLU GLY GLU SEQRES 27 A 477 ARG GLU MET THR LEU GLY PHE VAL ASP LEU LEU ARG ASP SEQRES 28 A 477 ASP PHE ILE GLU LYS ASP ARG ALA ARG GLY ILE PHE PHE SEQRES 29 A 477 THR GLN ASP TRP VAL SER MET PRO GLY VAL ILE PRO VAL SEQRES 30 A 477 ALA SER GLY GLY ILE HIS VAL TRP HIS MET PRO ALA LEU SEQRES 31 A 477 THR GLU ILE PHE GLY ASP ASP SER VAL LEU GLN PHE GLY SEQRES 32 A 477 GLY GLY THR LEU GLY HIS PRO TRP GLY ASN ALA PRO GLY SEQRES 33 A 477 ALA ALA ALA ASN ARG VAL ALA LEU GLU ALA CYS VAL GLN SEQRES 34 A 477 ALA ARG ASN GLU GLY ARG ASP LEU ALA ARG GLU GLY ASN SEQRES 35 A 477 GLU ILE ILE ARG SER ALA CYS LYS TRP SER PRO GLU LEU SEQRES 36 A 477 ALA ALA ALA CYS GLU ILE TRP LYS ALA ILE LYS PHE GLU SEQRES 37 A 477 PHE GLU PRO VAL ASP LYS LEU ASP SER SEQRES 1 S 128 MME GLN VAL TRP PRO ILE GLU GLY ILE LYS LYS PHE GLU SEQRES 2 S 128 THR LEU SER TYR LEU PRO PRO LEU THR VAL GLU ASP LEU SEQRES 3 S 128 LEU LYS GLN ILE GLU TYR LEU LEU ARG SER LYS TRP VAL SEQRES 4 S 128 PRO CYS LEU GLU PHE SER LYS VAL GLY PHE VAL TYR ARG SEQRES 5 S 128 GLU ASN HIS ARG SER PRO GLY TYR TYR ASP GLY ARG TYR SEQRES 6 S 128 TRP THR MET TRP LYS LEU PRO MET PHE GLY CYS THR ASP SEQRES 7 S 128 ALA THR GLN VAL LEU LYS GLU LEU GLU GLU ALA LYS LYS SEQRES 8 S 128 ALA TYR PRO ASP ALA PHE VAL ARG ILE ILE GLY PHE ASP SEQRES 9 S 128 ASN VAL ARG GLN VAL GLN LEU ILE SER PHE ILE ALA TYR SEQRES 10 S 128 LYS PRO PRO GLY CYS GLU GLU SER GLY GLY ASN SEQRES 1 E 477 MET SER PRO GLN THR GLU THR LYS ALA SER VAL GLY PHE SEQRES 2 E 477 LYS ALA GLY VAL LYS ASP TYR LYS LEU THR TYR TYR THR SEQRES 3 E 477 PRO GLU TYR GLU THR LYS ASP THR ASP ILE LEU ALA ALA SEQRES 4 E 477 PHE ARG VAL THR PRO GLN PRO GLY VAL PRO PRO GLU GLU SEQRES 5 E 477 ALA GLY ALA ALA VAL ALA ALA GLU SER SER THR GLY THR SEQRES 6 E 477 TRP THR THR VAL TRP THR ASP GLY LEU THR SER LEU ASP SEQRES 7 E 477 ARG TYR LYS GLY ARG CYS TYR HIS ILE GLU PRO VAL VAL SEQRES 8 E 477 GLY GLU ASP ASN GLN TYR ILE ALA TYR VAL ALA TYR PRO SEQRES 9 E 477 LEU ASP LEU PHE GLU GLU GLY SER VAL THR ASN MET PHE SEQRES 10 E 477 THR SER ILE VAL GLY ASN VAL PHE GLY PHE LYS ALA LEU SEQRES 11 E 477 ARG ALA LEU ARG LEU GLU ASP LEU ARG ILE PRO PRO THR SEQRES 12 E 477 TYR SER LYS THR PHE GLN GLY PRO PRO HIS GLY ILE GLN SEQRES 13 E 477 VAL GLU ARG ASP LYS LEU ASN LYS TYR GLY ARG PRO LEU SEQRES 14 E 477 LEU GLY CYS THR ILE LYS PRO LYS LEU GLY LEU SER ALA SEQRES 15 E 477 LYS ASN TYR GLY ARG ALA CYS TYR GLU CYS LEU ARG GLY SEQRES 16 E 477 GLY LEU ASP PHE THR KCX ASP ASP GLU ASN VAL ASN SER SEQRES 17 E 477 GLN PRO PHE MET ARG TRP ARG ASP ARG PHE VAL PHE CYS SEQRES 18 E 477 ALA GLU ALA ILE TYR LYS SER GLN ALA GLU THR GLY GLU SEQRES 19 E 477 ILE LYS GLY HIS TYR LEU ASN ALA THR ALA GLY THR CYS SEQRES 20 E 477 GLU GLU MET ILE LYS ARG ALA VAL PHE ALA ARG GLU LEU SEQRES 21 E 477 GLY VAL PRO ILE VAL MET HIS ASP TYR LEU THR GLY GLY SEQRES 22 E 477 PHE THR ALA ASN THR SER LEU ALA HIS TYR CYS ARG ASP SEQRES 23 E 477 ASN GLY LEU LEU LEU HIS ILE HIS ARG ALA MET HIS ALA SEQRES 24 E 477 VAL ILE ASP ARG GLN LYS ASN HIS GLY MET HIS PHE ARG SEQRES 25 E 477 VAL LEU ALA LYS ALA LEU ARG MET SER GLY GLY ASP HIS SEQRES 26 E 477 ILE HIS ALA GLY THR VAL VAL GLY LYS LEU GLU GLY GLU SEQRES 27 E 477 ARG GLU MET THR LEU GLY PHE VAL ASP LEU LEU ARG ASP SEQRES 28 E 477 ASP PHE ILE GLU LYS ASP ARG ALA ARG GLY ILE PHE PHE SEQRES 29 E 477 THR GLN ASP TRP VAL SER MET PRO GLY VAL ILE PRO VAL SEQRES 30 E 477 ALA SER GLY GLY ILE HIS VAL TRP HIS MET PRO ALA LEU SEQRES 31 E 477 THR GLU ILE PHE GLY ASP ASP SER VAL LEU GLN PHE GLY SEQRES 32 E 477 GLY GLY THR LEU GLY HIS PRO TRP GLY ASN ALA PRO GLY SEQRES 33 E 477 ALA ALA ALA ASN ARG VAL ALA LEU GLU ALA CYS VAL GLN SEQRES 34 E 477 ALA ARG ASN GLU GLY ARG ASP LEU ALA ARG GLU GLY ASN SEQRES 35 E 477 GLU ILE ILE ARG SER ALA CYS LYS TRP SER PRO GLU LEU SEQRES 36 E 477 ALA ALA ALA CYS GLU ILE TRP LYS ALA ILE LYS PHE GLU SEQRES 37 E 477 PHE GLU PRO VAL ASP LYS LEU ASP SER SEQRES 1 W 128 MME GLN VAL TRP PRO ILE GLU GLY ILE LYS LYS PHE GLU SEQRES 2 W 128 THR LEU SER TYR LEU PRO PRO LEU THR VAL GLU ASP LEU SEQRES 3 W 128 LEU LYS GLN ILE GLU TYR LEU LEU ARG SER LYS TRP VAL SEQRES 4 W 128 PRO CYS LEU GLU PHE SER LYS VAL GLY PHE VAL TYR ARG SEQRES 5 W 128 GLU ASN HIS ARG SER PRO GLY TYR TYR ASP GLY ARG TYR SEQRES 6 W 128 TRP THR MET TRP LYS LEU PRO MET PHE GLY CYS THR ASP SEQRES 7 W 128 ALA THR GLN VAL LEU LYS GLU LEU GLU GLU ALA LYS LYS SEQRES 8 W 128 ALA TYR PRO ASP ALA PHE VAL ARG ILE ILE GLY PHE ASP SEQRES 9 W 128 ASN VAL ARG GLN VAL GLN LEU ILE SER PHE ILE ALA TYR SEQRES 10 W 128 LYS PRO PRO GLY CYS GLU GLU SER GLY GLY ASN MODRES 1WDD KCX A 201 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 1WDD MME S 1 MET N-METHYL METHIONINE MODRES 1WDD KCX E 201 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 1WDD MME W 1 MET N-METHYL METHIONINE HET KCX A 201 12 HET MME S 1 9 HET KCX E 201 12 HET MME W 1 9 HET MG A1476 1 HET CAP A1001 21 HET GOL A3001 6 HET GOL A3004 6 HET GOL A3006 6 HET GOL A3010 6 HET GOL A3012 6 HET GOL A3015 6 HET GOL A3017 6 HET MG E2476 1 HET CAP E2001 21 HET GOL E3002 6 HET GOL E3003 6 HET GOL E3005 6 HET GOL E3009 6 HET GOL E3011 6 HET GOL E3013 6 HET GOL E3014 6 HET GOL E3016 6 HET GOL W3007 6 HET GOL W3008 6 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM MME N-METHYL METHIONINE HETNAM MG MAGNESIUM ION HETNAM CAP 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 2 MME 2(C6 H13 N O2 S) FORMUL 5 MG 2(MG 2+) FORMUL 6 CAP 2(C6 H14 O13 P2) FORMUL 7 GOL 17(C3 H8 O3) FORMUL 26 HOH *999(H2 O) HELIX 1 1 TYR A 20 TYR A 25 1 6 HELIX 2 2 PRO A 49 SER A 61 1 13 HELIX 3 3 VAL A 69 THR A 75 5 7 HELIX 4 4 SER A 76 LYS A 81 1 6 HELIX 5 5 PRO A 104 PHE A 108 5 5 HELIX 6 6 SER A 112 GLY A 122 1 11 HELIX 7 7 ASN A 123 PHE A 127 5 5 HELIX 8 8 PRO A 141 LYS A 146 1 6 HELIX 9 9 GLY A 154 ASN A 163 1 10 HELIX 10 10 SER A 181 GLY A 195 1 15 HELIX 11 11 ARG A 213 GLY A 233 1 21 HELIX 12 12 THR A 246 GLY A 261 1 16 HELIX 13 13 TYR A 269 GLY A 273 1 5 HELIX 14 14 GLY A 273 GLY A 288 1 16 HELIX 15 15 MET A 297 ARG A 303 1 7 HELIX 16 16 HIS A 310 GLY A 322 1 13 HELIX 17 17 GLU A 338 ASP A 351 1 14 HELIX 18 18 ASP A 357 GLY A 361 5 5 HELIX 19 19 HIS A 383 TRP A 385 5 3 HELIX 20 20 HIS A 386 GLY A 395 1 10 HELIX 21 21 GLY A 403 GLY A 408 1 6 HELIX 22 22 GLY A 412 GLU A 433 1 22 HELIX 23 23 ASP A 436 LYS A 450 1 15 HELIX 24 24 SER A 452 LYS A 463 1 12 HELIX 25 25 THR S 22 SER S 36 1 15 HELIX 26 26 ASP S 78 TYR S 93 1 16 HELIX 27 27 TYR E 20 TYR E 25 1 6 HELIX 28 28 PRO E 49 SER E 61 1 13 HELIX 29 29 VAL E 69 THR E 75 5 7 HELIX 30 30 SER E 76 LYS E 81 1 6 HELIX 31 31 PRO E 104 PHE E 108 5 5 HELIX 32 32 SER E 112 GLY E 122 1 11 HELIX 33 33 ASN E 123 PHE E 127 5 5 HELIX 34 34 PRO E 141 LYS E 146 1 6 HELIX 35 35 GLY E 154 ASN E 163 1 10 HELIX 36 36 SER E 181 GLY E 195 1 15 HELIX 37 37 ARG E 213 GLY E 233 1 21 HELIX 38 38 THR E 246 GLY E 261 1 16 HELIX 39 39 TYR E 269 GLY E 273 1 5 HELIX 40 40 GLY E 273 ASN E 287 1 15 HELIX 41 41 MET E 297 ARG E 303 1 7 HELIX 42 42 HIS E 310 GLY E 322 1 13 HELIX 43 43 GLU E 338 ASP E 351 1 14 HELIX 44 44 ASP E 357 GLY E 361 5 5 HELIX 45 45 HIS E 383 TRP E 385 5 3 HELIX 46 46 HIS E 386 GLY E 395 1 10 HELIX 47 47 GLY E 403 GLY E 408 1 6 HELIX 48 48 GLY E 412 GLY E 434 1 23 HELIX 49 49 ASP E 436 LYS E 450 1 15 HELIX 50 50 SER E 452 LYS E 463 1 12 HELIX 51 51 THR W 22 SER W 36 1 15 HELIX 52 52 ASP W 78 TYR W 93 1 16 SHEET 1 A 5 ARG A 83 PRO A 89 0 SHEET 2 A 5 TYR A 97 TYR A 103 -1 O ILE A 98 N GLU A 88 SHEET 3 A 5 ILE A 36 PRO A 44 -1 N PHE A 40 O ALA A 99 SHEET 4 A 5 LEU A 130 ARG A 139 -1 O ARG A 131 N THR A 43 SHEET 5 A 5 GLY A 308 MET A 309 1 O GLY A 308 N LEU A 135 SHEET 1 B 8 LEU A 169 GLY A 171 0 SHEET 2 B 8 VAL A 399 GLN A 401 1 O LEU A 400 N LEU A 169 SHEET 3 B 8 ILE A 375 SER A 379 1 N ALA A 378 O GLN A 401 SHEET 4 B 8 HIS A 325 HIS A 327 1 N ILE A 326 O VAL A 377 SHEET 5 B 8 LEU A 290 HIS A 294 1 N ILE A 293 O HIS A 325 SHEET 6 B 8 ILE A 264 ASP A 268 1 N VAL A 265 O HIS A 292 SHEET 7 B 8 GLY A 237 ASN A 241 1 N LEU A 240 O MET A 266 SHEET 8 B 8 PHE A 199 KCX A 201 1 N THR A 200 O TYR A 239 SHEET 1 C 2 PHE A 353 ILE A 354 0 SHEET 2 C 2 GLN A 366 ASP A 367 -1 O GLN A 366 N ILE A 354 SHEET 1 D 4 THR S 67 TRP S 69 0 SHEET 2 D 4 VAL S 39 SER S 45 -1 N LEU S 42 O TRP S 69 SHEET 3 D 4 PHE S 97 ASP S 104 -1 O ILE S 101 N CYS S 41 SHEET 4 D 4 VAL S 109 TYR S 117 -1 O LEU S 111 N GLY S 102 SHEET 1 E 5 ARG E 83 PRO E 89 0 SHEET 2 E 5 TYR E 97 TYR E 103 -1 O TYR E 100 N HIS E 86 SHEET 3 E 5 ILE E 36 PRO E 44 -1 N ILE E 36 O TYR E 103 SHEET 4 E 5 LEU E 130 ARG E 139 -1 O ARG E 131 N THR E 43 SHEET 5 E 5 GLY E 308 MET E 309 1 O GLY E 308 N LEU E 135 SHEET 1 F 8 LEU E 169 GLY E 171 0 SHEET 2 F 8 VAL E 399 GLN E 401 1 O LEU E 400 N LEU E 169 SHEET 3 F 8 ILE E 375 SER E 379 1 N ALA E 378 O GLN E 401 SHEET 4 F 8 HIS E 325 HIS E 327 1 N ILE E 326 O VAL E 377 SHEET 5 F 8 LEU E 290 HIS E 294 1 N ILE E 293 O HIS E 325 SHEET 6 F 8 ILE E 264 ASP E 268 1 N VAL E 265 O HIS E 292 SHEET 7 F 8 GLY E 237 ASN E 241 1 N LEU E 240 O MET E 266 SHEET 8 F 8 PHE E 199 KCX E 201 1 N THR E 200 O TYR E 239 SHEET 1 G 2 PHE E 353 ILE E 354 0 SHEET 2 G 2 GLN E 366 ASP E 367 -1 O GLN E 366 N ILE E 354 SHEET 1 H 4 THR W 67 TRP W 69 0 SHEET 2 H 4 VAL W 39 SER W 45 -1 N LEU W 42 O TRP W 69 SHEET 3 H 4 PHE W 97 ASP W 104 -1 O PHE W 97 N SER W 45 SHEET 4 H 4 VAL W 109 TYR W 117 -1 O ALA W 116 N VAL W 98 SSBOND 1 CYS A 247 CYS E 247 1555 1555 2.53 LINK C THR A 200 N KCX A 201 1555 1555 1.32 LINK C KCX A 201 N ASP A 202 1555 1555 1.34 LINK C MME S 1 N GLN S 2 1555 1555 1.33 LINK C THR E 200 N KCX E 201 1555 1555 1.33 LINK C KCX E 201 N ASP E 202 1555 1555 1.34 LINK C MME W 1 N GLN W 2 1555 1555 1.33 LINK OQ2 KCX A 201 MG MG A1476 1555 1555 2.00 LINK OD1 ASP A 203 MG MG A1476 1555 1555 1.96 LINK OE1 GLU A 204 MG MG A1476 1555 1555 1.99 LINK O2 CAP A1001 MG MG A1476 1555 1555 2.22 LINK O3 CAP A1001 MG MG A1476 1555 1555 2.17 LINK O6 CAP A1001 MG MG A1476 1555 1555 2.09 LINK OQ2 KCX E 201 MG MG E2476 1555 1555 2.00 LINK OD1 ASP E 203 MG MG E2476 1555 1555 1.89 LINK OE1 GLU E 204 MG MG E2476 1555 1555 2.01 LINK O6 CAP E2001 MG MG E2476 1555 1555 2.05 LINK O2 CAP E2001 MG MG E2476 1555 1555 2.25 LINK O3 CAP E2001 MG MG E2476 1555 1555 2.15 CISPEP 1 LYS A 175 PRO A 176 0 0.31 CISPEP 2 LYS E 175 PRO E 176 0 3.75 SITE 1 AC1 5 LYS A 177 KCX A 201 ASP A 203 GLU A 204 SITE 2 AC1 5 CAP A1001 SITE 1 AC2 5 LYS E 177 KCX E 201 ASP E 203 GLU E 204 SITE 2 AC2 5 CAP E2001 SITE 1 AC3 29 THR A 173 LYS A 175 LYS A 177 KCX A 201 SITE 2 AC3 29 ASP A 203 GLU A 204 HIS A 294 ARG A 295 SITE 3 AC3 29 HIS A 327 LYS A 334 LEU A 335 SER A 379 SITE 4 AC3 29 GLY A 380 GLY A 381 GLY A 403 GLY A 404 SITE 5 AC3 29 MG A1476 HOH A3108 HOH A3109 HOH A3115 SITE 6 AC3 29 HOH A3117 HOH A3131 HOH A3132 GLU E 60 SITE 7 AC3 29 THR E 65 TRP E 66 ASN E 123 HOH E3028 SITE 8 AC3 29 HOH E3038 SITE 1 AC4 29 GLU A 60 THR A 65 TRP A 66 ASN A 123 SITE 2 AC4 29 HOH A3032 HOH A3055 THR E 173 LYS E 175 SITE 3 AC4 29 LYS E 177 KCX E 201 ASP E 203 GLU E 204 SITE 4 AC4 29 HIS E 294 ARG E 295 HIS E 327 LYS E 334 SITE 5 AC4 29 LEU E 335 SER E 379 GLY E 380 GLY E 381 SITE 6 AC4 29 GLY E 403 GLY E 404 MG E2476 HOH E3020 SITE 7 AC4 29 HOH E3044 HOH E3045 HOH E3046 HOH E3130 SITE 8 AC4 29 HOH E3131 SITE 1 AC5 9 LYS A 32 PRO A 104 LEU A 105 ASP A 106 SITE 2 AC5 9 HOH A3027 HOH A3166 HOH A3167 HOH A3407 SITE 3 AC5 9 HOH E3142 SITE 1 AC6 10 HOH A3127 HOH A3204 HOH A3205 LYS E 32 SITE 2 AC6 10 PRO E 104 LEU E 105 ASP E 106 HOH E3053 SITE 3 AC6 10 HOH E3362 HOH E3375 SITE 1 AC7 6 LEU A 270 LEU E 270 MET E 297 HOH E3035 SITE 2 AC7 6 HOH E3036 HOH E3037 SITE 1 AC8 10 GLY A 16 VAL A 17 LYS A 18 TYR A 20 SITE 2 AC8 10 THR A 65 THR A 67 THR A 68 GOL A3010 SITE 3 AC8 10 HOH A3021 HOH A3036 SITE 1 AC9 3 GLU E 52 HOH E3042 HOH E3058 SITE 1 BC1 5 GLU A 52 HOH A3029 HOH A3030 HOH A3259 SITE 2 BC1 5 HOH A3360 SITE 1 BC2 10 ASN E 163 ARG E 187 GLU W 43 ARG W 64 SITE 2 BC2 10 TYR W 65 TRP W 66 ARG W 99 GLN W 110 SITE 3 BC2 10 HOH W 536 HOH W 558 SITE 1 BC3 6 GLN W 2 VAL W 3 TRP W 69 ALA W 92 SITE 2 BC3 6 HOH W 312 HOH W 669 SITE 1 BC4 8 TYR E 226 GLN E 229 ALA E 230 HOH E3366 SITE 2 BC4 8 VAL W 50 ASN W 54 ARG W 56 HOH W 555 SITE 1 BC5 9 LYS A 18 THR A 23 THR A 68 ASP A 72 SITE 2 BC5 9 LEU A 77 GOL A3004 GOL A3012 HOH A3038 SITE 3 BC5 9 HOH A3327 SITE 1 BC6 10 GLY E 16 VAL E 17 LYS E 18 TYR E 20 SITE 2 BC6 10 THR E 65 THR E 67 THR E 68 HOH E3026 SITE 3 BC6 10 HOH E3049 HOH E3304 SITE 1 BC7 8 VAL A 11 PHE A 13 THR A 68 VAL A 69 SITE 2 BC7 8 TRP A 70 GLY A 73 GOL A3010 PHE W 74 SITE 1 BC8 4 THR E 68 VAL E 69 TRP E 70 HOH E3183 SITE 1 BC9 10 ARG E 295 HIS E 298 PHE E 311 GLY E 329 SITE 2 BC9 10 GLU E 336 PHE E 345 HOH E3128 HOH E3133 SITE 3 BC9 10 HOH E3172 HOH E3300 SITE 1 CC1 10 ASN A 163 ARG A 187 HOH A3303 GLU S 43 SITE 2 CC1 10 ARG S 64 TYR S 65 TRP S 66 ARG S 99 SITE 3 CC1 10 GLN S 110 HOH S 177 SITE 1 CC2 9 HOH A3263 ILE E 155 GLN E 156 ARG E 350 SITE 2 CC2 9 ASP E 351 ASP E 352 PRO E 372 GLY E 373 SITE 3 CC2 9 HOH E3141 SITE 1 CC3 5 THR A 23 LEU A 77 ASP A 78 LYS A 81 SITE 2 CC3 5 HOH A3161 CRYST1 111.713 111.713 196.780 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005082 0.00000