HEADER OXIDOREDUCTASE 21-MAY-04 1WE1 TITLE CRYSTAL STRUCTURE OF HEME OXYGENASE-1 FROM CYANOBACTERIUM TITLE 2 SYNECHOCYSTIS SP. PCC6803 IN COMPLEX WITH HEME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEME OXYGENASE 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.14.99.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMW172 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SUGISHIMA,C.T.MIGITA,X.ZHANG,T.YOSHIDA,K.FUKUYAMA REVDAT 4 25-OCT-23 1WE1 1 REMARK LINK REVDAT 3 13-JUL-11 1WE1 1 VERSN REVDAT 2 24-FEB-09 1WE1 1 VERSN REVDAT 1 21-DEC-04 1WE1 0 JRNL AUTH M.SUGISHIMA,C.T.MIGITA,X.ZHANG,T.YOSHIDA,K.FUKUYAMA JRNL TITL CRYSTAL STRUCTURE OF HEME OXYGENASE-1 FROM CYANOBACTERIUM JRNL TITL 2 SYNECHOCYSTIS SP. PCC 6803 IN COMPLEX WITH HEME JRNL REF EUR.J.BIOCHEM. V. 271 4517 2004 JRNL REFN ISSN 0014-2956 JRNL PMID 15560792 JRNL DOI 10.1111/J.1432-1033.2004.04411.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.T.MIGITA,X.ZHANG,T.YOSHIDA REMARK 1 TITL EXPRESSION AND CHARACTERIZATION OF CYANOBACTERIUM HEME REMARK 1 TITL 2 OXYGENASE, A KEY ENZYME IN THE PHYCOBILIN SYNTHESIS. REMARK 1 TITL 3 PROPERTIES OF THE HEME COMPLEX OF RECOMBINANT ACTIVE ENZYME REMARK 1 REF EUR.J.BIOCHEM. V. 270 687 2003 REMARK 1 REFN ISSN 0014-2956 REMARK 1 PMID 12581208 REMARK 1 DOI 10.1046/J.1432-1033.2003.03421.X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 41943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4214 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3480 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 393 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 219 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : -0.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.19700 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : -5.31800 REMARK 3 B13 (A**2) : 7.51600 REMARK 3 B23 (A**2) : -2.00500 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.214 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.56 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.752 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WE1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000023478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46584 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30200 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DVE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, 2-PROPANOL, 1,5 REMARK 280 -DIAMINOPENTANE DIHYDROCHLORIDE, SODIUM CITRATE, POTTASIUM REMARK 280 PHOSPHATE, PH 5.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.39500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.39500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1027 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 224 REMARK 465 ARG A 225 REMARK 465 ARG A 226 REMARK 465 SER A 227 REMARK 465 GLN A 228 REMARK 465 GLY A 229 REMARK 465 SER A 230 REMARK 465 THR A 231 REMARK 465 GLU A 232 REMARK 465 VAL A 233 REMARK 465 GLY A 234 REMARK 465 LEU A 235 REMARK 465 ALA A 236 REMARK 465 THR A 237 REMARK 465 SER A 238 REMARK 465 GLU A 239 REMARK 465 GLY A 240 REMARK 465 MET B 1 REMARK 465 ARG B 224 REMARK 465 ARG B 225 REMARK 465 ARG B 226 REMARK 465 SER B 227 REMARK 465 GLN B 228 REMARK 465 GLY B 229 REMARK 465 SER B 230 REMARK 465 THR B 231 REMARK 465 GLU B 232 REMARK 465 VAL B 233 REMARK 465 GLY B 234 REMARK 465 LEU B 235 REMARK 465 ALA B 236 REMARK 465 THR B 237 REMARK 465 SER B 238 REMARK 465 GLU B 239 REMARK 465 GLY B 240 REMARK 465 MET C 1 REMARK 465 ARG C 224 REMARK 465 ARG C 225 REMARK 465 ARG C 226 REMARK 465 SER C 227 REMARK 465 GLN C 228 REMARK 465 GLY C 229 REMARK 465 SER C 230 REMARK 465 THR C 231 REMARK 465 GLU C 232 REMARK 465 VAL C 233 REMARK 465 GLY C 234 REMARK 465 LEU C 235 REMARK 465 ALA C 236 REMARK 465 THR C 237 REMARK 465 SER C 238 REMARK 465 GLU C 239 REMARK 465 GLY C 240 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ARG D 224 REMARK 465 ARG D 225 REMARK 465 ARG D 226 REMARK 465 SER D 227 REMARK 465 GLN D 228 REMARK 465 GLY D 229 REMARK 465 SER D 230 REMARK 465 THR D 231 REMARK 465 GLU D 232 REMARK 465 VAL D 233 REMARK 465 GLY D 234 REMARK 465 LEU D 235 REMARK 465 ALA D 236 REMARK 465 THR D 237 REMARK 465 SER D 238 REMARK 465 GLU D 239 REMARK 465 GLY D 240 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 2 OG REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 LYS C 97 CG CD CE NZ REMARK 470 MET C 217 CG SD CE REMARK 470 GLU D 157 CG CD OE1 OE2 REMARK 470 ASP D 190 CG OD1 OD2 REMARK 470 MET D 217 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 4 44.69 76.53 REMARK 500 ILE A 65 -64.00 -104.99 REMARK 500 PRO A 72 -5.80 -51.89 REMARK 500 ASN A 75 118.67 -32.16 REMARK 500 ALA A 116 55.85 -146.50 REMARK 500 ARG A 127 -71.54 -87.89 REMARK 500 ASN A 147 72.75 62.70 REMARK 500 LEU A 148 63.65 -114.59 REMARK 500 ASP A 162 -76.34 -67.92 REMARK 500 GLN A 182 -30.46 -38.88 REMARK 500 ASN B 75 132.94 -34.86 REMARK 500 ALA B 116 66.76 -157.76 REMARK 500 HIS B 149 -41.36 179.98 REMARK 500 ASP B 150 45.85 -83.36 REMARK 500 ALA C 116 71.30 -164.37 REMARK 500 HIS C 149 -117.75 -101.29 REMARK 500 ASP C 162 -71.56 -61.14 REMARK 500 ASN D 4 41.87 81.33 REMARK 500 LEU D 66 -2.99 -57.11 REMARK 500 ILE D 69 31.72 -99.17 REMARK 500 ASN D 91 43.90 -94.93 REMARK 500 ALA D 116 76.69 -156.46 REMARK 500 ARG D 127 -75.78 -81.09 REMARK 500 HIS D 149 -70.69 -101.72 REMARK 500 PHE D 158 73.47 -102.88 REMARK 500 ASP D 177 50.64 -91.97 REMARK 500 GLN D 182 -6.32 -54.14 REMARK 500 LEU D 222 1.73 -62.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 17 NE2 REMARK 620 2 HEM A 300 NA 92.3 REMARK 620 3 HEM A 300 NB 93.2 89.8 REMARK 620 4 HEM A 300 NC 86.5 178.5 89.4 REMARK 620 5 HEM A 300 ND 89.6 91.0 177.0 89.9 REMARK 620 6 HOH A1006 O 178.0 87.4 88.7 93.9 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 17 NE2 REMARK 620 2 HEM B 300 NA 90.1 REMARK 620 3 HEM B 300 NB 92.4 90.2 REMARK 620 4 HEM B 300 NC 88.7 178.8 89.9 REMARK 620 5 HEM B 300 ND 90.9 90.6 176.6 89.4 REMARK 620 6 HOH B1007 O 167.1 102.0 91.8 79.2 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 17 NE2 REMARK 620 2 HEM C 300 NA 89.3 REMARK 620 3 HEM C 300 NB 86.1 90.0 REMARK 620 4 HEM C 300 NC 90.6 179.7 89.8 REMARK 620 5 HEM C 300 ND 96.5 90.1 177.4 90.2 REMARK 620 6 HOH C1008 O 177.9 92.4 95.1 87.7 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 17 NE2 REMARK 620 2 HEM D 300 NA 90.0 REMARK 620 3 HEM D 300 NB 91.2 89.9 REMARK 620 4 HEM D 300 NC 88.6 178.6 89.8 REMARK 620 5 HEM D 300 ND 90.4 90.3 178.4 90.1 REMARK 620 6 HOH D1009 O 171.7 97.7 85.9 83.6 92.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 242 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 243 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA C 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA D 1008 DBREF 1WE1 A 1 240 UNP P72849 HO1_SYNY3 1 240 DBREF 1WE1 B 1 240 UNP P72849 HO1_SYNY3 1 240 DBREF 1WE1 C 1 240 UNP P72849 HO1_SYNY3 1 240 DBREF 1WE1 D 1 240 UNP P72849 HO1_SYNY3 1 240 SEQRES 1 A 240 MET SER VAL ASN LEU ALA SER GLN LEU ARG GLU GLY THR SEQRES 2 A 240 LYS LYS SER HIS SER MET ALA GLU ASN VAL GLY PHE VAL SEQRES 3 A 240 LYS CYS PHE LEU LYS GLY VAL VAL GLU LYS ASN SER TYR SEQRES 4 A 240 ARG LYS LEU VAL GLY ASN LEU TYR PHE VAL TYR SER ALA SEQRES 5 A 240 MET GLU GLU GLU MET ALA LYS PHE LYS ASP HIS PRO ILE SEQRES 6 A 240 LEU SER HIS ILE TYR PHE PRO GLU LEU ASN ARG LYS GLN SEQRES 7 A 240 SER LEU GLU GLN ASP LEU GLN PHE TYR TYR GLY SER ASN SEQRES 8 A 240 TRP ARG GLN GLU VAL LYS ILE SER ALA ALA GLY GLN ALA SEQRES 9 A 240 TYR VAL ASP ARG VAL ARG GLN VAL ALA ALA THR ALA PRO SEQRES 10 A 240 GLU LEU LEU VAL ALA HIS SER TYR THR ARG TYR LEU GLY SEQRES 11 A 240 ASP LEU SER GLY GLY GLN ILE LEU LYS LYS ILE ALA GLN SEQRES 12 A 240 ASN ALA MET ASN LEU HIS ASP GLY GLY THR ALA PHE TYR SEQRES 13 A 240 GLU PHE ALA ASP ILE ASP ASP GLU LYS ALA PHE LYS ASN SEQRES 14 A 240 THR TYR ARG GLN ALA MET ASN ASP LEU PRO ILE ASP GLN SEQRES 15 A 240 ALA THR ALA GLU ARG ILE VAL ASP GLU ALA ASN ASP ALA SEQRES 16 A 240 PHE ALA MET ASN MET LYS MET PHE ASN GLU LEU GLU GLY SEQRES 17 A 240 ASN LEU ILE LYS ALA ILE GLY ILE MET VAL PHE ASN SER SEQRES 18 A 240 LEU THR ARG ARG ARG SER GLN GLY SER THR GLU VAL GLY SEQRES 19 A 240 LEU ALA THR SER GLU GLY SEQRES 1 B 240 MET SER VAL ASN LEU ALA SER GLN LEU ARG GLU GLY THR SEQRES 2 B 240 LYS LYS SER HIS SER MET ALA GLU ASN VAL GLY PHE VAL SEQRES 3 B 240 LYS CYS PHE LEU LYS GLY VAL VAL GLU LYS ASN SER TYR SEQRES 4 B 240 ARG LYS LEU VAL GLY ASN LEU TYR PHE VAL TYR SER ALA SEQRES 5 B 240 MET GLU GLU GLU MET ALA LYS PHE LYS ASP HIS PRO ILE SEQRES 6 B 240 LEU SER HIS ILE TYR PHE PRO GLU LEU ASN ARG LYS GLN SEQRES 7 B 240 SER LEU GLU GLN ASP LEU GLN PHE TYR TYR GLY SER ASN SEQRES 8 B 240 TRP ARG GLN GLU VAL LYS ILE SER ALA ALA GLY GLN ALA SEQRES 9 B 240 TYR VAL ASP ARG VAL ARG GLN VAL ALA ALA THR ALA PRO SEQRES 10 B 240 GLU LEU LEU VAL ALA HIS SER TYR THR ARG TYR LEU GLY SEQRES 11 B 240 ASP LEU SER GLY GLY GLN ILE LEU LYS LYS ILE ALA GLN SEQRES 12 B 240 ASN ALA MET ASN LEU HIS ASP GLY GLY THR ALA PHE TYR SEQRES 13 B 240 GLU PHE ALA ASP ILE ASP ASP GLU LYS ALA PHE LYS ASN SEQRES 14 B 240 THR TYR ARG GLN ALA MET ASN ASP LEU PRO ILE ASP GLN SEQRES 15 B 240 ALA THR ALA GLU ARG ILE VAL ASP GLU ALA ASN ASP ALA SEQRES 16 B 240 PHE ALA MET ASN MET LYS MET PHE ASN GLU LEU GLU GLY SEQRES 17 B 240 ASN LEU ILE LYS ALA ILE GLY ILE MET VAL PHE ASN SER SEQRES 18 B 240 LEU THR ARG ARG ARG SER GLN GLY SER THR GLU VAL GLY SEQRES 19 B 240 LEU ALA THR SER GLU GLY SEQRES 1 C 240 MET SER VAL ASN LEU ALA SER GLN LEU ARG GLU GLY THR SEQRES 2 C 240 LYS LYS SER HIS SER MET ALA GLU ASN VAL GLY PHE VAL SEQRES 3 C 240 LYS CYS PHE LEU LYS GLY VAL VAL GLU LYS ASN SER TYR SEQRES 4 C 240 ARG LYS LEU VAL GLY ASN LEU TYR PHE VAL TYR SER ALA SEQRES 5 C 240 MET GLU GLU GLU MET ALA LYS PHE LYS ASP HIS PRO ILE SEQRES 6 C 240 LEU SER HIS ILE TYR PHE PRO GLU LEU ASN ARG LYS GLN SEQRES 7 C 240 SER LEU GLU GLN ASP LEU GLN PHE TYR TYR GLY SER ASN SEQRES 8 C 240 TRP ARG GLN GLU VAL LYS ILE SER ALA ALA GLY GLN ALA SEQRES 9 C 240 TYR VAL ASP ARG VAL ARG GLN VAL ALA ALA THR ALA PRO SEQRES 10 C 240 GLU LEU LEU VAL ALA HIS SER TYR THR ARG TYR LEU GLY SEQRES 11 C 240 ASP LEU SER GLY GLY GLN ILE LEU LYS LYS ILE ALA GLN SEQRES 12 C 240 ASN ALA MET ASN LEU HIS ASP GLY GLY THR ALA PHE TYR SEQRES 13 C 240 GLU PHE ALA ASP ILE ASP ASP GLU LYS ALA PHE LYS ASN SEQRES 14 C 240 THR TYR ARG GLN ALA MET ASN ASP LEU PRO ILE ASP GLN SEQRES 15 C 240 ALA THR ALA GLU ARG ILE VAL ASP GLU ALA ASN ASP ALA SEQRES 16 C 240 PHE ALA MET ASN MET LYS MET PHE ASN GLU LEU GLU GLY SEQRES 17 C 240 ASN LEU ILE LYS ALA ILE GLY ILE MET VAL PHE ASN SER SEQRES 18 C 240 LEU THR ARG ARG ARG SER GLN GLY SER THR GLU VAL GLY SEQRES 19 C 240 LEU ALA THR SER GLU GLY SEQRES 1 D 240 MET SER VAL ASN LEU ALA SER GLN LEU ARG GLU GLY THR SEQRES 2 D 240 LYS LYS SER HIS SER MET ALA GLU ASN VAL GLY PHE VAL SEQRES 3 D 240 LYS CYS PHE LEU LYS GLY VAL VAL GLU LYS ASN SER TYR SEQRES 4 D 240 ARG LYS LEU VAL GLY ASN LEU TYR PHE VAL TYR SER ALA SEQRES 5 D 240 MET GLU GLU GLU MET ALA LYS PHE LYS ASP HIS PRO ILE SEQRES 6 D 240 LEU SER HIS ILE TYR PHE PRO GLU LEU ASN ARG LYS GLN SEQRES 7 D 240 SER LEU GLU GLN ASP LEU GLN PHE TYR TYR GLY SER ASN SEQRES 8 D 240 TRP ARG GLN GLU VAL LYS ILE SER ALA ALA GLY GLN ALA SEQRES 9 D 240 TYR VAL ASP ARG VAL ARG GLN VAL ALA ALA THR ALA PRO SEQRES 10 D 240 GLU LEU LEU VAL ALA HIS SER TYR THR ARG TYR LEU GLY SEQRES 11 D 240 ASP LEU SER GLY GLY GLN ILE LEU LYS LYS ILE ALA GLN SEQRES 12 D 240 ASN ALA MET ASN LEU HIS ASP GLY GLY THR ALA PHE TYR SEQRES 13 D 240 GLU PHE ALA ASP ILE ASP ASP GLU LYS ALA PHE LYS ASN SEQRES 14 D 240 THR TYR ARG GLN ALA MET ASN ASP LEU PRO ILE ASP GLN SEQRES 15 D 240 ALA THR ALA GLU ARG ILE VAL ASP GLU ALA ASN ASP ALA SEQRES 16 D 240 PHE ALA MET ASN MET LYS MET PHE ASN GLU LEU GLU GLY SEQRES 17 D 240 ASN LEU ILE LYS ALA ILE GLY ILE MET VAL PHE ASN SER SEQRES 18 D 240 LEU THR ARG ARG ARG SER GLN GLY SER THR GLU VAL GLY SEQRES 19 D 240 LEU ALA THR SER GLU GLY HET PO4 A 241 5 HET CL A 242 1 HET CL A 243 1 HET HEM A 300 43 HET IPA A1001 4 HET IPA A1005 4 HET PO4 B 241 5 HET CL B 242 1 HET HEM B 300 43 HET IPA B1002 4 HET IPA B1006 4 HET CL C 241 1 HET HEM C 300 43 HET IPA C1003 4 HET IPA C1007 4 HET CL D 241 1 HET HEM D 300 43 HET IPA D1004 4 HET IPA D1008 4 HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM IPA ISOPROPYL ALCOHOL HETSYN HEM HEME HETSYN IPA 2-PROPANOL FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 CL 5(CL 1-) FORMUL 8 HEM 4(C34 H32 FE N4 O4) FORMUL 9 IPA 8(C3 H8 O) FORMUL 24 HOH *209(H2 O) HELIX 1 1 ASN A 4 THR A 13 1 10 HELIX 2 2 THR A 13 ASN A 22 1 10 HELIX 3 3 VAL A 23 LYS A 31 1 9 HELIX 4 4 GLU A 35 PHE A 60 1 26 HELIX 5 5 ILE A 65 TYR A 70 5 6 HELIX 6 6 ARG A 76 GLY A 89 1 14 HELIX 7 7 ASN A 91 VAL A 96 1 6 HELIX 8 8 SER A 99 ALA A 116 1 18 HELIX 9 9 LEU A 119 ASN A 147 1 29 HELIX 10 10 THR A 153 GLU A 157 5 5 HELIX 11 11 ASP A 163 ASP A 177 1 15 HELIX 12 12 ASP A 181 LEU A 206 1 26 HELIX 13 13 LEU A 206 THR A 223 1 18 HELIX 14 14 ASN B 4 THR B 13 1 10 HELIX 15 15 THR B 13 ASN B 22 1 10 HELIX 16 16 VAL B 23 LYS B 31 1 9 HELIX 17 17 GLU B 35 PHE B 60 1 26 HELIX 18 18 ILE B 65 TYR B 70 5 6 HELIX 19 19 PHE B 71 ASN B 75 5 5 HELIX 20 20 ARG B 76 GLY B 89 1 14 HELIX 21 21 ASN B 91 VAL B 96 1 6 HELIX 22 22 SER B 99 ALA B 116 1 18 HELIX 23 23 LEU B 119 MET B 146 1 28 HELIX 24 24 THR B 153 GLU B 157 5 5 HELIX 25 25 ASP B 163 ASP B 177 1 15 HELIX 26 26 ASP B 181 GLU B 205 1 25 HELIX 27 27 LEU B 206 THR B 223 1 18 HELIX 28 28 ASN C 4 ASN C 22 1 19 HELIX 29 29 VAL C 23 LYS C 31 1 9 HELIX 30 30 GLU C 35 PHE C 60 1 26 HELIX 31 31 ILE C 65 TYR C 70 5 6 HELIX 32 32 PHE C 71 ASN C 75 5 5 HELIX 33 33 ARG C 76 GLY C 89 1 14 HELIX 34 34 ASN C 91 VAL C 96 1 6 HELIX 35 35 SER C 99 ALA C 116 1 18 HELIX 36 36 LEU C 119 MET C 146 1 28 HELIX 37 37 THR C 153 GLU C 157 5 5 HELIX 38 38 ASP C 163 ASP C 177 1 15 HELIX 39 39 ASP C 181 LEU C 206 1 26 HELIX 40 40 LEU C 206 THR C 223 1 18 HELIX 41 41 ASN D 4 THR D 13 1 10 HELIX 42 42 THR D 13 ASN D 22 1 10 HELIX 43 43 VAL D 23 LYS D 31 1 9 HELIX 44 44 GLU D 35 LYS D 59 1 25 HELIX 45 45 PHE D 71 ASN D 75 5 5 HELIX 46 46 ARG D 76 GLY D 89 1 14 HELIX 47 47 ASN D 91 GLU D 95 5 5 HELIX 48 48 SER D 99 ALA D 116 1 18 HELIX 49 49 LEU D 119 GLY D 134 1 16 HELIX 50 50 GLY D 134 ASN D 147 1 14 HELIX 51 51 THR D 153 GLU D 157 5 5 HELIX 52 52 ASP D 163 ASP D 177 1 15 HELIX 53 53 ASP D 181 LEU D 206 1 26 HELIX 54 54 LEU D 206 LEU D 222 1 17 LINK NE2 HIS A 17 FE HEM A 300 1555 1555 2.05 LINK FE HEM A 300 O HOH A1006 1555 1555 1.80 LINK NE2 HIS B 17 FE HEM B 300 1555 1555 2.00 LINK FE HEM B 300 O HOH B1007 1555 1555 2.09 LINK NE2 HIS C 17 FE HEM C 300 1555 1555 1.88 LINK FE HEM C 300 O HOH C1008 1555 1555 1.92 LINK NE2 HIS D 17 FE HEM D 300 1555 1555 2.10 LINK FE HEM D 300 O HOH D1009 1555 1555 1.96 SITE 1 AC1 5 LYS A 165 LYS A 168 LYS D 165 LYS D 168 SITE 2 AC1 5 ARG D 172 SITE 1 AC2 6 LYS B 165 LYS B 168 ARG B 172 LYS C 165 SITE 2 AC2 6 LYS C 168 ARG C 172 SITE 1 AC3 1 LYS B 14 SITE 1 AC4 1 ARG C 10 SITE 1 AC5 2 ARG A 108 ASP A 194 SITE 1 AC6 15 ARG A 10 HIS A 17 ALA A 20 LEU A 30 SITE 2 AC6 15 TYR A 125 THR A 126 GLY A 130 SER A 133 SITE 3 AC6 15 ILE A 137 LEU A 138 LYS A 168 ARG A 172 SITE 4 AC6 15 PHE A 203 HOH A1006 LYS D 165 SITE 1 AC7 16 ARG B 10 HIS B 17 ALA B 20 VAL B 26 SITE 2 AC7 16 LEU B 30 TYR B 125 THR B 126 GLY B 130 SITE 3 AC7 16 SER B 133 GLY B 134 LEU B 138 PHE B 196 SITE 4 AC7 16 ASN B 199 HOH B1007 HOH B1051 LYS C 165 SITE 1 AC8 16 LYS B 165 ARG C 10 HIS C 17 ALA C 20 SITE 2 AC8 16 VAL C 26 TYR C 125 THR C 126 GLY C 130 SITE 3 AC8 16 SER C 133 ILE C 137 LEU C 138 PHE C 196 SITE 4 AC8 16 ASN C 199 HOH C1008 HOH C1011 HOH C1012 SITE 1 AC9 17 LYS A 165 ARG D 10 HIS D 17 ALA D 20 SITE 2 AC9 17 VAL D 26 LEU D 30 TYR D 125 THR D 126 SITE 3 AC9 17 ARG D 127 GLY D 130 SER D 133 ILE D 137 SITE 4 AC9 17 ARG D 172 PHE D 196 ASN D 199 PHE D 203 SITE 5 AC9 17 HOH D1009 SITE 1 BC1 2 TYR D 156 PHE D 203 SITE 1 BC2 2 TYR C 156 HOH C1072 SITE 1 BC3 1 PHE B 203 SITE 1 BC4 2 PHE A 29 LEU A 42 SITE 1 BC5 7 GLU A 54 MET A 57 ILE A 69 TYR A 70 SITE 2 BC5 7 PHE A 71 ASN A 75 TYR A 128 SITE 1 BC6 7 MET B 57 ILE B 69 TYR B 70 PHE B 71 SITE 2 BC6 7 LEU B 74 SER B 124 TYR B 128 SITE 1 BC7 6 MET C 57 ILE C 69 PHE C 71 LEU C 74 SITE 2 BC7 6 ASN C 75 SER C 124 SITE 1 BC8 7 MET D 57 ILE D 69 TYR D 70 PHE D 71 SITE 2 BC8 7 ASN D 75 SER D 124 TYR D 128 CRYST1 110.790 113.730 109.700 90.00 112.26 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009026 0.000000 0.003695 0.00000 SCALE2 0.000000 0.008793 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009850 0.00000