HEADER DNA BINDING PROTEIN 27-MAY-04 1WG2 TITLE SOLUTION STRUCTURE OF ZF-AN1 DOMAIN FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER (AN1-LIKE) FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-AN1 DOMAIN; COMPND 5 SYNONYM: HYPOTHETICAL ZINC-FINGER PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: RIKEN CDNA RAFL09-11-C11; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030421-16; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS ZINC FINGER, AN1, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, STRUCTURAL GENOMICS, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SUETAKE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WG2 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1WG2 1 VERSN REVDAT 1 27-NOV-04 1WG2 0 JRNL AUTH T.SUETAKE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF ZF-AN1 DOMAIN FROM ARABIDOPSIS JRNL TITL 2 THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.31 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WG2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023541. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.21MM 13C, 15N-LABELED PROTEIN; REMARK 210 0.1MM ZNCL2; 20MM D-TRIS-HCL; REMARK 210 100MM NACL; 1MM D10-DTT;0.02% REMARK 210 NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2002045, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.860, CYANA 2.0.31 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATION, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 11 -175.83 -69.75 REMARK 500 1 VAL A 12 44.47 -81.21 REMARK 500 1 PRO A 14 -176.10 -69.76 REMARK 500 1 SER A 20 -41.98 -134.29 REMARK 500 1 CYS A 39 30.24 -91.79 REMARK 500 1 HIS A 48 124.93 -172.25 REMARK 500 1 GLU A 49 91.49 -42.53 REMARK 500 1 PHE A 52 138.39 -36.92 REMARK 500 1 LYS A 55 141.19 -34.70 REMARK 500 1 GLU A 56 170.62 -52.28 REMARK 500 1 SER A 59 170.74 -55.36 REMARK 500 2 ARG A 10 151.68 -48.03 REMARK 500 2 PRO A 11 -166.84 -69.78 REMARK 500 2 VAL A 12 33.67 -84.23 REMARK 500 2 SER A 20 -40.09 -134.14 REMARK 500 2 CYS A 39 34.92 -96.72 REMARK 500 2 HIS A 48 134.76 -172.83 REMARK 500 2 GLU A 49 88.65 -47.99 REMARK 500 2 SER A 51 35.90 -92.17 REMARK 500 2 ASP A 53 89.70 -58.62 REMARK 500 2 VAL A 57 99.76 -41.35 REMARK 500 2 SER A 59 105.38 -42.15 REMARK 500 3 SER A 2 89.18 -67.54 REMARK 500 3 SER A 5 46.77 -82.14 REMARK 500 3 PRO A 11 -163.42 -69.80 REMARK 500 3 VAL A 12 46.51 -76.83 REMARK 500 3 ASN A 16 86.22 -53.82 REMARK 500 3 SER A 20 -43.12 -134.77 REMARK 500 3 CYS A 39 34.55 -93.09 REMARK 500 3 HIS A 48 126.44 -171.60 REMARK 500 3 GLU A 49 89.64 -45.41 REMARK 500 3 SER A 51 33.46 -86.59 REMARK 500 3 LYS A 55 108.00 -54.00 REMARK 500 4 ARG A 10 150.50 -40.90 REMARK 500 4 PRO A 11 -163.93 -69.80 REMARK 500 4 VAL A 12 39.12 -82.18 REMARK 500 4 SER A 20 -39.55 -133.62 REMARK 500 4 LYS A 24 109.52 -42.24 REMARK 500 4 CYS A 39 37.24 -98.68 REMARK 500 4 HIS A 48 134.09 -172.28 REMARK 500 4 GLU A 49 87.65 -49.06 REMARK 500 4 SER A 51 33.58 -93.20 REMARK 500 4 ASP A 53 68.94 -104.22 REMARK 500 5 PRO A 8 92.75 -69.76 REMARK 500 5 PRO A 11 -166.23 -69.81 REMARK 500 5 VAL A 12 34.96 -84.17 REMARK 500 5 ASN A 16 84.64 -54.37 REMARK 500 5 ARG A 17 145.28 -171.66 REMARK 500 5 SER A 20 -41.91 -134.14 REMARK 500 5 LYS A 24 119.19 -36.66 REMARK 500 REMARK 500 THIS ENTRY HAS 204 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 93.4 REMARK 620 3 CYS A 39 SG 119.0 117.7 REMARK 620 4 HIS A 42 ND1 86.1 102.6 129.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 32 SG REMARK 620 2 CYS A 34 SG 90.6 REMARK 620 3 HIS A 48 NE2 122.2 111.0 REMARK 620 4 CYS A 50 SG 101.6 117.3 112.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ATR001009308.1 RELATED DB: TARGETDB DBREF 1WG2 A 8 58 UNP Q9SZ69 ZF2N3_ARATH 106 156 SEQADV 1WG2 GLY A 1 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 2 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 3 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 GLY A 4 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 5 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 6 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 GLY A 7 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 59 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 GLY A 60 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 PRO A 61 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 62 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 SER A 63 UNP Q9SZ69 CLONING ARTIFACT SEQADV 1WG2 GLY A 64 UNP Q9SZ69 CLONING ARTIFACT SEQRES 1 A 64 GLY SER SER GLY SER SER GLY PRO SER ARG PRO VAL ARG SEQRES 2 A 64 PRO ASN ASN ARG CYS PHE SER CYS ASN LYS LYS VAL GLY SEQRES 3 A 64 VAL MET GLY PHE LYS CYS LYS CYS GLY SER THR PHE CYS SEQRES 4 A 64 GLY SER HIS ARG TYR PRO GLU LYS HIS GLU CYS SER PHE SEQRES 5 A 64 ASP PHE LYS GLU VAL GLY SER GLY PRO SER SER GLY HET ZN A 200 1 HET ZN A 400 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) SHEET 1 A 2 PHE A 30 LYS A 31 0 SHEET 2 A 2 THR A 37 PHE A 38 -1 O PHE A 38 N PHE A 30 LINK SG CYS A 18 ZN ZN A 200 1555 1555 2.26 LINK SG CYS A 21 ZN ZN A 200 1555 1555 2.34 LINK SG CYS A 32 ZN ZN A 400 1555 1555 2.35 LINK SG CYS A 34 ZN ZN A 400 1555 1555 2.35 LINK SG CYS A 39 ZN ZN A 200 1555 1555 2.25 LINK ND1 HIS A 42 ZN ZN A 200 1555 1555 2.01 LINK NE2 HIS A 48 ZN ZN A 400 1555 1555 2.05 LINK SG CYS A 50 ZN ZN A 400 1555 1555 2.33 SITE 1 AC1 4 CYS A 18 CYS A 21 CYS A 39 HIS A 42 SITE 1 AC2 4 CYS A 32 CYS A 34 HIS A 48 CYS A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1