data_1WGO # _entry.id 1WGO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WGO pdb_00001wgo 10.2210/pdb1wgo/pdb RCSB RCSB023559 ? ? WWPDB D_1000023559 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002001303.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WGO _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chikayama, E.' 1 'Kigawa, T.' 2 'Tochio, N.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the PKD domain from human VPS10 domain-containing receptor SorCS2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chikayama, E.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Tochio, N.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'VPS10 domain-containing receptor SorCS2' _entity.formula_weight 13104.545 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PKD domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGCEGGVDMQQSQVQLQCPLTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLT LTGEPIRHRYESPGIYRVSVRAENTAGHDEAVLFVQVSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGCEGGVDMQQSQVQLQCPLTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLT LTGEPIRHRYESPGIYRVSVRAENTAGHDEAVLFVQVSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002001303.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 CYS n 1 9 GLU n 1 10 GLY n 1 11 GLY n 1 12 VAL n 1 13 ASP n 1 14 MET n 1 15 GLN n 1 16 GLN n 1 17 SER n 1 18 GLN n 1 19 VAL n 1 20 GLN n 1 21 LEU n 1 22 GLN n 1 23 CYS n 1 24 PRO n 1 25 LEU n 1 26 THR n 1 27 PRO n 1 28 PRO n 1 29 ARG n 1 30 GLY n 1 31 LEU n 1 32 GLN n 1 33 VAL n 1 34 SER n 1 35 ILE n 1 36 GLN n 1 37 GLY n 1 38 GLU n 1 39 ALA n 1 40 VAL n 1 41 ALA n 1 42 VAL n 1 43 ARG n 1 44 PRO n 1 45 GLY n 1 46 GLU n 1 47 ASP n 1 48 VAL n 1 49 LEU n 1 50 PHE n 1 51 VAL n 1 52 VAL n 1 53 ARG n 1 54 GLN n 1 55 GLU n 1 56 GLN n 1 57 GLY n 1 58 ASP n 1 59 VAL n 1 60 LEU n 1 61 THR n 1 62 THR n 1 63 LYS n 1 64 TYR n 1 65 GLN n 1 66 VAL n 1 67 ASP n 1 68 LEU n 1 69 GLY n 1 70 ASP n 1 71 GLY n 1 72 PHE n 1 73 LYS n 1 74 ALA n 1 75 MET n 1 76 TYR n 1 77 VAL n 1 78 ASN n 1 79 LEU n 1 80 THR n 1 81 LEU n 1 82 THR n 1 83 GLY n 1 84 GLU n 1 85 PRO n 1 86 ILE n 1 87 ARG n 1 88 HIS n 1 89 ARG n 1 90 TYR n 1 91 GLU n 1 92 SER n 1 93 PRO n 1 94 GLY n 1 95 ILE n 1 96 TYR n 1 97 ARG n 1 98 VAL n 1 99 SER n 1 100 VAL n 1 101 ARG n 1 102 ALA n 1 103 GLU n 1 104 ASN n 1 105 THR n 1 106 ALA n 1 107 GLY n 1 108 HIS n 1 109 ASP n 1 110 GLU n 1 111 ALA n 1 112 VAL n 1 113 LEU n 1 114 PHE n 1 115 VAL n 1 116 GLN n 1 117 VAL n 1 118 SER n 1 119 GLY n 1 120 PRO n 1 121 SER n 1 122 SER n 1 123 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'KAZUSA cDNA fh14788' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040119-67 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SORC2_HUMAN _struct_ref.pdbx_db_accession Q96PQ0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;CEGGVDMQQSQVQLQCPLTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIR HRYESPGIYRVSVRAENTAGHDEAVLFVQV ; _struct_ref.pdbx_align_begin 760 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WGO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96PQ0 _struct_ref_seq.db_align_beg 760 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 869 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 117 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WGO GLY A 1 ? UNP Q96PQ0 ? ? 'cloning artifact' 1 1 1 1WGO SER A 2 ? UNP Q96PQ0 ? ? 'cloning artifact' 2 2 1 1WGO SER A 3 ? UNP Q96PQ0 ? ? 'cloning artifact' 3 3 1 1WGO GLY A 4 ? UNP Q96PQ0 ? ? 'cloning artifact' 4 4 1 1WGO SER A 5 ? UNP Q96PQ0 ? ? 'cloning artifact' 5 5 1 1WGO SER A 6 ? UNP Q96PQ0 ? ? 'cloning artifact' 6 6 1 1WGO GLY A 7 ? UNP Q96PQ0 ? ? 'cloning artifact' 7 7 1 1WGO SER A 118 ? UNP Q96PQ0 ? ? 'cloning artifact' 118 8 1 1WGO GLY A 119 ? UNP Q96PQ0 ? ? 'cloning artifact' 119 9 1 1WGO PRO A 120 ? UNP Q96PQ0 ? ? 'cloning artifact' 120 10 1 1WGO SER A 121 ? UNP Q96PQ0 ? ? 'cloning artifact' 121 11 1 1WGO SER A 122 ? UNP Q96PQ0 ? ? 'cloning artifact' 122 12 1 1WGO GLY A 123 ? UNP Q96PQ0 ? ? 'cloning artifact' 123 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 3D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.12mM PKD domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WGO _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WGO _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 NMRPipe 20030801 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.901 'data analysis' 'Kobayashi, N.' 4 CYANA 2.0.17 'structure solution' 'Guentert, P.' 5 CYANA 2.0.17 refinement 'Guentert, P.' 6 # _exptl.entry_id 1WGO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WGO _struct.title 'Solution structure of the PKD domain from human VPS10 domain-containing receptor SorCS2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WGO _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;polycystic kidney disease, PKD, structural genomics, KIAA1329 protein, RIKEN Structural Genomics/Proteomics Initiative, RSGI, MEMBRANE PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 78 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 83 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 78 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 83 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 31 ? ILE A 35 ? LEU A 31 ILE A 35 A 2 VAL A 48 ? GLN A 54 ? VAL A 48 GLN A 54 A 3 ILE A 86 ? HIS A 88 ? ILE A 86 HIS A 88 B 1 LYS A 73 ? VAL A 77 ? LYS A 73 VAL A 77 B 2 LYS A 63 ? ASP A 67 ? LYS A 63 ASP A 67 B 3 TYR A 96 ? GLU A 103 ? TYR A 96 GLU A 103 B 4 HIS A 108 ? VAL A 115 ? HIS A 108 VAL A 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 34 ? N SER A 34 O VAL A 51 ? O VAL A 51 A 2 3 N VAL A 48 ? N VAL A 48 O HIS A 88 ? O HIS A 88 B 1 2 O TYR A 76 ? O TYR A 76 N TYR A 64 ? N TYR A 64 B 2 3 N ASP A 67 ? N ASP A 67 O SER A 99 ? O SER A 99 B 3 4 N ALA A 102 ? N ALA A 102 O ASP A 109 ? O ASP A 109 # _database_PDB_matrix.entry_id 1WGO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WGO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 MET 75 75 75 MET MET A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 THR 105 105 105 THR THR A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 ASP 109 109 109 ASP ASP A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 GLY 123 123 123 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 8 ? ? -171.28 136.81 2 1 ASP A 13 ? ? -45.76 158.15 3 1 MET A 14 ? ? -65.81 85.67 4 1 GLN A 18 ? ? -100.96 60.46 5 1 LEU A 21 ? ? -174.16 127.68 6 1 VAL A 40 ? ? -95.00 -66.82 7 1 VAL A 59 ? ? -47.24 156.77 8 1 THR A 61 ? ? -39.53 105.83 9 1 ASP A 70 ? ? -91.25 40.01 10 1 GLU A 91 ? ? -102.35 -60.58 11 1 ALA A 106 ? ? -94.04 -74.86 12 1 PRO A 120 ? ? -69.71 2.73 13 1 SER A 122 ? ? -42.82 159.30 14 2 GLN A 15 ? ? -69.33 93.86 15 2 LEU A 21 ? ? -36.87 137.07 16 2 PRO A 24 ? ? -69.76 87.94 17 2 GLN A 36 ? ? -38.81 103.62 18 2 GLU A 38 ? ? -59.41 107.82 19 2 LEU A 60 ? ? -52.03 -179.62 20 2 HIS A 88 ? ? -165.04 118.02 21 2 ALA A 106 ? ? -62.76 -72.26 22 2 PRO A 120 ? ? -69.81 81.74 23 3 GLN A 36 ? ? -39.10 93.24 24 3 GLU A 38 ? ? -59.93 109.11 25 3 VAL A 59 ? ? 32.55 35.50 26 3 THR A 61 ? ? -55.83 102.47 27 3 ALA A 106 ? ? -63.76 -71.95 28 4 GLN A 15 ? ? 35.73 42.15 29 4 PRO A 24 ? ? -69.77 92.22 30 4 PRO A 28 ? ? -69.73 95.07 31 4 GLN A 36 ? ? -35.03 96.86 32 4 ASP A 47 ? ? -57.87 87.45 33 4 LEU A 60 ? ? -36.94 144.59 34 4 ASN A 78 ? ? 34.60 37.79 35 4 ALA A 106 ? ? -61.33 -73.98 36 5 MET A 14 ? ? -174.54 141.68 37 5 GLN A 20 ? ? -47.76 152.56 38 5 PRO A 24 ? ? -69.79 -173.48 39 5 GLN A 36 ? ? -34.22 100.17 40 5 GLU A 38 ? ? -56.50 107.92 41 5 PRO A 44 ? ? -69.81 86.00 42 5 VAL A 59 ? ? 39.97 25.02 43 5 ASP A 70 ? ? -45.90 -74.77 44 5 PRO A 120 ? ? -69.76 93.71 45 5 SER A 122 ? ? -127.52 -53.99 46 6 SER A 6 ? ? -45.10 166.90 47 6 GLN A 15 ? ? -132.47 -46.46 48 6 GLN A 16 ? ? 34.81 43.43 49 6 GLN A 18 ? ? -95.34 42.18 50 6 PRO A 24 ? ? -69.70 -172.45 51 6 GLN A 36 ? ? -45.54 91.54 52 6 VAL A 40 ? ? -94.71 -63.20 53 6 ASP A 47 ? ? -68.33 95.44 54 6 PRO A 120 ? ? -69.71 1.89 55 7 GLU A 9 ? ? -172.66 130.70 56 7 ASP A 13 ? ? -49.54 172.33 57 7 GLN A 36 ? ? -38.17 105.37 58 7 GLU A 38 ? ? -57.41 107.96 59 7 VAL A 59 ? ? -132.98 -56.52 60 7 LEU A 60 ? ? -35.92 142.66 61 7 GLU A 84 ? ? -34.94 117.89 62 7 PRO A 85 ? ? -69.74 -173.01 63 7 ALA A 106 ? ? -93.33 -65.48 64 7 SER A 118 ? ? -56.47 -176.17 65 7 SER A 121 ? ? -90.54 -64.57 66 8 GLN A 20 ? ? -172.13 128.90 67 8 PRO A 24 ? ? -69.83 -171.63 68 8 GLN A 36 ? ? -34.66 93.49 69 8 GLU A 38 ? ? -57.01 107.68 70 8 SER A 118 ? ? -65.78 -178.65 71 9 VAL A 12 ? ? -172.75 112.98 72 9 GLN A 36 ? ? -44.40 98.20 73 9 GLU A 38 ? ? -55.99 109.28 74 9 VAL A 40 ? ? -102.50 -61.76 75 9 PRO A 44 ? ? -69.81 89.91 76 9 VAL A 59 ? ? -33.82 148.39 77 9 THR A 61 ? ? -34.74 123.33 78 9 ASP A 70 ? ? -47.63 -70.81 79 10 SER A 3 ? ? -170.21 112.33 80 10 SER A 5 ? ? -163.46 117.04 81 10 CYS A 8 ? ? -162.18 115.29 82 10 GLN A 36 ? ? -45.99 100.83 83 10 GLU A 38 ? ? -58.72 107.96 84 10 PRO A 44 ? ? -69.78 93.17 85 10 ASN A 78 ? ? 37.34 37.28 86 10 ALA A 106 ? ? -60.64 -70.33 87 10 SER A 122 ? ? -50.90 103.13 88 11 SER A 5 ? ? -171.72 128.41 89 11 CYS A 8 ? ? -166.76 111.47 90 11 LEU A 25 ? ? -56.03 -177.32 91 11 GLN A 36 ? ? -34.38 94.16 92 11 GLU A 38 ? ? -56.27 108.29 93 11 PRO A 44 ? ? -69.76 86.38 94 11 ASP A 47 ? ? -37.91 128.77 95 11 VAL A 59 ? ? -38.59 -37.16 96 11 LEU A 60 ? ? -33.73 122.93 97 11 THR A 61 ? ? -42.17 109.56 98 11 ASN A 78 ? ? 35.96 37.18 99 11 ALA A 106 ? ? -75.03 -73.48 100 11 PRO A 120 ? ? -69.82 1.55 101 12 SER A 2 ? ? -174.54 149.54 102 12 SER A 17 ? ? -172.79 125.39 103 12 PRO A 24 ? ? -69.81 -170.39 104 12 GLN A 36 ? ? -36.57 94.75 105 12 VAL A 40 ? ? -122.51 -62.85 106 12 ASP A 47 ? ? -59.07 98.51 107 12 VAL A 59 ? ? -32.36 139.08 108 12 ASP A 70 ? ? -48.90 -70.05 109 12 ASN A 78 ? ? 42.07 25.31 110 12 ALA A 102 ? ? -161.08 117.64 111 12 PRO A 120 ? ? -69.70 85.60 112 13 VAL A 12 ? ? 33.71 37.76 113 13 GLN A 36 ? ? -35.54 93.98 114 13 GLU A 38 ? ? -55.98 107.84 115 13 PRO A 44 ? ? -69.75 83.67 116 13 VAL A 59 ? ? -34.02 151.14 117 13 LEU A 60 ? ? 36.91 46.97 118 13 THR A 61 ? ? -38.88 143.02 119 13 ALA A 106 ? ? -58.65 -70.99 120 13 PRO A 120 ? ? -69.74 1.47 121 14 SER A 2 ? ? -171.54 123.36 122 14 GLN A 36 ? ? -35.35 99.34 123 14 GLU A 38 ? ? -59.38 107.93 124 14 VAL A 40 ? ? -106.04 -65.40 125 14 PRO A 44 ? ? -69.77 99.14 126 14 GLU A 84 ? ? -39.50 125.45 127 14 PRO A 85 ? ? -69.82 -175.83 128 14 ALA A 106 ? ? -62.34 -72.29 129 14 SER A 122 ? ? -116.36 59.02 130 15 CYS A 8 ? ? -131.10 -46.56 131 15 GLN A 18 ? ? -93.93 45.51 132 15 PRO A 24 ? ? -69.83 -171.24 133 15 GLN A 36 ? ? -34.86 93.48 134 15 VAL A 40 ? ? -124.82 -56.48 135 15 PRO A 44 ? ? -69.79 85.59 136 15 VAL A 59 ? ? -130.59 -51.18 137 15 LEU A 60 ? ? -34.99 121.91 138 15 GLU A 84 ? ? -34.28 122.11 139 15 PRO A 85 ? ? -69.78 -171.73 140 15 SER A 118 ? ? -47.86 167.85 141 15 PRO A 120 ? ? -69.76 2.79 142 15 SER A 121 ? ? 74.43 53.26 143 16 LEU A 21 ? ? -172.09 141.59 144 16 PRO A 24 ? ? -69.73 -164.30 145 16 LEU A 25 ? ? -34.16 149.87 146 16 GLN A 36 ? ? -36.44 104.30 147 16 GLU A 38 ? ? -59.66 107.88 148 16 ASP A 47 ? ? -53.92 84.79 149 16 VAL A 59 ? ? -171.66 124.08 150 16 ASP A 70 ? ? -58.03 -71.62 151 16 ALA A 106 ? ? -64.47 -71.12 152 16 PRO A 120 ? ? -69.75 2.49 153 17 MET A 14 ? ? -42.75 151.05 154 17 GLN A 15 ? ? -121.55 -55.06 155 17 PRO A 24 ? ? -69.77 -164.32 156 17 GLU A 38 ? ? -57.19 107.85 157 17 VAL A 40 ? ? -126.03 -57.65 158 17 PRO A 44 ? ? -69.74 96.19 159 17 THR A 61 ? ? 34.46 44.97 160 17 ASN A 78 ? ? 34.38 38.42 161 17 SER A 118 ? ? -55.74 174.11 162 18 GLN A 20 ? ? -102.37 42.52 163 18 PRO A 24 ? ? -69.76 2.60 164 18 GLN A 36 ? ? -42.02 95.06 165 18 GLU A 38 ? ? -56.24 107.81 166 18 VAL A 40 ? ? -98.06 -63.73 167 18 VAL A 59 ? ? -29.70 -52.35 168 18 THR A 61 ? ? -43.64 101.11 169 18 GLU A 84 ? ? -35.52 116.71 170 19 VAL A 19 ? ? 35.32 36.46 171 19 GLN A 36 ? ? -45.66 97.91 172 19 GLU A 38 ? ? -56.02 107.91 173 19 PRO A 44 ? ? -69.74 82.86 174 19 LEU A 60 ? ? -38.48 155.55 175 19 ASP A 70 ? ? -40.61 -74.70 176 19 GLU A 84 ? ? -39.53 127.24 177 19 PRO A 85 ? ? -69.68 -178.44 178 19 ALA A 106 ? ? -63.39 -73.03 179 19 SER A 118 ? ? -58.12 -175.85 180 20 SER A 5 ? ? -172.46 128.85 181 20 SER A 6 ? ? -170.97 123.34 182 20 MET A 14 ? ? -98.09 43.75 183 20 PRO A 24 ? ? -69.73 -174.92 184 20 PRO A 28 ? ? -69.77 99.38 185 20 GLN A 36 ? ? -42.73 95.67 186 20 GLU A 38 ? ? -55.86 107.87 187 20 VAL A 40 ? ? -133.20 -58.69 188 20 ASP A 58 ? ? 74.03 38.84 189 20 GLU A 84 ? ? -36.79 117.15 190 20 PRO A 120 ? ? -69.67 -172.75 #