HEADER RNA BINDING PROTEIN 28-MAY-04 1WHY TITLE SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF FROM HYPOTHETICAL RNA TITLE 2 BINDING PROTEIN BC052180 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN RIKEN CDNA 1810017N16; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: HYPOTHETICAL PROTEIN BC052180; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA 1810017N16; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030916-18; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RNA RECOGNITION MOTIF, RRM, RNA BINDING DOMAIN, RBD, RNP, STRUCTURAL KEYWDS 2 GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 3 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WHY 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WHY 1 VERSN REVDAT 1 28-NOV-04 1WHY 0 JRNL AUTH T.NAGATA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA RECOGNITION MOTIF FROM JRNL TITL 2 HYPOTHETICAL RNA BINDING PROTEIN BC052180 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW 5.0.4, CYANA 2.0 REMARK 3 AUTHORS : JOHNSON (NMRVIEW), GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WHY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023597. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM PROTEIN U-15N, 13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 100MM NACL; REMARK 210 1MM DTT; 0.02% NAN3; 90% H2O; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0, NMRPIPE 2.3, KUJIRA REMARK 210 0.901 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 75 145.53 -35.80 REMARK 500 1 SER A 76 41.28 -98.27 REMARK 500 1 ILE A 82 151.86 -45.35 REMARK 500 1 ALA A 108 -34.61 -35.15 REMARK 500 1 ARG A 113 -28.62 -39.79 REMARK 500 1 SER A 116 103.56 -50.63 REMARK 500 1 SER A 127 39.23 71.06 REMARK 500 1 ARG A 147 99.06 -34.66 REMARK 500 1 PRO A 150 95.18 -69.79 REMARK 500 2 ARG A 113 -35.33 -38.27 REMARK 500 2 ARG A 147 98.89 -42.45 REMARK 500 2 PRO A 150 97.68 -69.77 REMARK 500 3 THR A 102 104.31 -48.88 REMARK 500 3 PRO A 150 5.29 -69.76 REMARK 500 3 LEU A 151 95.85 -34.21 REMARK 500 3 PHE A 162 154.49 -39.31 REMARK 500 4 TYR A 84 147.72 -171.20 REMARK 500 4 ARG A 147 102.63 -40.72 REMARK 500 4 PRO A 150 5.29 -69.74 REMARK 500 4 LEU A 151 149.40 -34.17 REMARK 500 4 PRO A 167 98.71 -69.74 REMARK 500 5 THR A 102 108.77 -55.76 REMARK 500 5 ALA A 106 -70.06 -52.41 REMARK 500 5 VAL A 123 126.08 -170.99 REMARK 500 5 SER A 127 31.42 70.27 REMARK 500 5 ARG A 147 118.48 -37.50 REMARK 500 5 PRO A 150 5.20 -69.80 REMARK 500 5 LEU A 151 149.57 -34.65 REMARK 500 5 SER A 168 104.14 -57.27 REMARK 500 6 ALA A 108 -26.44 -39.05 REMARK 500 6 ARG A 147 95.82 -35.74 REMARK 500 6 PRO A 150 5.47 -69.76 REMARK 500 6 LEU A 151 136.12 -33.93 REMARK 500 6 SER A 169 131.10 -174.71 REMARK 500 7 SER A 76 41.55 38.93 REMARK 500 7 ARG A 147 95.84 -35.62 REMARK 500 7 PRO A 150 5.47 -69.77 REMARK 500 7 LEU A 151 100.71 -36.93 REMARK 500 8 SER A 79 42.51 34.64 REMARK 500 8 LYS A 81 43.36 -96.92 REMARK 500 8 PRO A 150 5.65 -69.77 REMARK 500 8 LEU A 151 153.94 -36.05 REMARK 500 8 LYS A 164 138.63 -173.91 REMARK 500 8 PRO A 167 94.07 -69.71 REMARK 500 8 SER A 169 107.62 -55.68 REMARK 500 9 ILE A 82 145.79 -38.03 REMARK 500 9 ARG A 147 113.42 -34.93 REMARK 500 9 PRO A 150 5.83 -69.73 REMARK 500 9 LEU A 151 149.61 -33.76 REMARK 500 10 LYS A 124 -62.77 -90.39 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007120361.1 RELATED DB: TARGETDB DBREF 1WHY A 81 164 GB 40254294 NP_780611 81 164 SEQADV 1WHY GLY A 74 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 75 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 76 GB 40254294 CLONING ARTIFACT SEQADV 1WHY GLY A 77 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 78 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 79 GB 40254294 CLONING ARTIFACT SEQADV 1WHY GLY A 80 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 165 GB 40254294 CLONING ARTIFACT SEQADV 1WHY GLY A 166 GB 40254294 CLONING ARTIFACT SEQADV 1WHY PRO A 167 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 168 GB 40254294 CLONING ARTIFACT SEQADV 1WHY SER A 169 GB 40254294 CLONING ARTIFACT SEQADV 1WHY GLY A 170 GB 40254294 CLONING ARTIFACT SEQRES 1 A 97 GLY SER SER GLY SER SER GLY LYS ILE GLY TYR GLY LYS SEQRES 2 A 97 ALA ASN PRO THR THR ARG LEU TRP VAL GLY GLY LEU GLY SEQRES 3 A 97 PRO ASN THR SER LEU ALA ALA LEU ALA ARG GLU PHE ASP SEQRES 4 A 97 ARG PHE GLY SER ILE ARG THR ILE ASP HIS VAL LYS GLY SEQRES 5 A 97 ASP SER PHE ALA TYR ILE GLN TYR GLU SER LEU ASP ALA SEQRES 6 A 97 ALA GLN ALA ALA CYS ALA LYS MET ARG GLY PHE PRO LEU SEQRES 7 A 97 GLY GLY PRO ASP ARG ARG LEU ARG VAL ASP PHE ALA LYS SEQRES 8 A 97 SER GLY PRO SER SER GLY HELIX 1 1 LEU A 104 ASP A 112 1 9 HELIX 2 2 LEU A 136 MET A 146 1 11 SHEET 1 A 4 ILE A 117 HIS A 122 0 SHEET 2 A 4 ALA A 129 TYR A 133 -1 O GLN A 132 N ARG A 118 SHEET 3 A 4 LEU A 93 GLY A 96 -1 N VAL A 95 O ALA A 129 SHEET 4 A 4 ARG A 159 PHE A 162 -1 O ASP A 161 N TRP A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1