data_1WI1 # _entry.id 1WI1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WI1 pdb_00001wi1 10.2210/pdb1wi1/pdb RCSB RCSB023600 ? ? WWPDB D_1000023600 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002101095.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WI1 _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoneyama, M.' 1 'Izumi, K.' 2 'Yoshida, M.' 3 'Tochio, N.' 4 'Koshiba, S.' 5 'Inoue, M.' 6 'Kigawa, T.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of the PH domain of human calcium-dependent activator protein for secretion (CAPS)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoneyama, M.' 1 ? primary 'Izumi, K.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Tochio, N.' 4 ? primary 'Koshiba, S.' 5 ? primary 'Inoue, M.' 6 ? primary 'Kigawa, T.' 7 ? primary 'Yokoyama, S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'calcium-dependent activator protein for secretion, CAPS' _entity.formula_weight 14130.815 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PH domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'KIAA1121 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFN AVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFN AVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002101095.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 LYS n 1 10 HIS n 1 11 SER n 1 12 GLY n 1 13 TYR n 1 14 LEU n 1 15 TRP n 1 16 ALA n 1 17 ILE n 1 18 GLY n 1 19 LYS n 1 20 ASN n 1 21 VAL n 1 22 TRP n 1 23 LYS n 1 24 ARG n 1 25 TRP n 1 26 LYS n 1 27 LYS n 1 28 ARG n 1 29 PHE n 1 30 PHE n 1 31 VAL n 1 32 LEU n 1 33 VAL n 1 34 GLN n 1 35 VAL n 1 36 SER n 1 37 GLN n 1 38 TYR n 1 39 THR n 1 40 PHE n 1 41 ALA n 1 42 MET n 1 43 CYS n 1 44 SER n 1 45 TYR n 1 46 ARG n 1 47 GLU n 1 48 LYS n 1 49 LYS n 1 50 ALA n 1 51 GLU n 1 52 PRO n 1 53 GLN n 1 54 GLU n 1 55 LEU n 1 56 LEU n 1 57 GLN n 1 58 LEU n 1 59 ASP n 1 60 GLY n 1 61 TYR n 1 62 THR n 1 63 VAL n 1 64 ASP n 1 65 TYR n 1 66 THR n 1 67 ASP n 1 68 PRO n 1 69 GLN n 1 70 PRO n 1 71 GLY n 1 72 LEU n 1 73 GLU n 1 74 GLY n 1 75 GLY n 1 76 ARG n 1 77 ALA n 1 78 PHE n 1 79 PHE n 1 80 ASN n 1 81 ALA n 1 82 VAL n 1 83 LYS n 1 84 GLU n 1 85 GLY n 1 86 ASP n 1 87 THR n 1 88 VAL n 1 89 ILE n 1 90 PHE n 1 91 ALA n 1 92 SER n 1 93 ASP n 1 94 ASP n 1 95 GLU n 1 96 GLN n 1 97 ASP n 1 98 ARG n 1 99 ILE n 1 100 LEU n 1 101 TRP n 1 102 VAL n 1 103 GLN n 1 104 ALA n 1 105 MET n 1 106 TYR n 1 107 ARG n 1 108 ALA n 1 109 THR n 1 110 GLY n 1 111 GLN n 1 112 SER n 1 113 HIS n 1 114 LYS n 1 115 PRO n 1 116 VAL n 1 117 PRO n 1 118 PRO n 1 119 THR n 1 120 GLN n 1 121 SER n 1 122 GLY n 1 123 PRO n 1 124 SER n 1 125 SER n 1 126 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'KAZUSA cDNA hh10147' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P030428-81 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8NFR0_HUMAN _struct_ref.pdbx_db_accession Q8NFR0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDT VIFASDDEQDRILWVQAMYRATGQSHKPVPPTQ ; _struct_ref.pdbx_align_begin 559 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WI1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 120 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8NFR0 _struct_ref_seq.db_align_beg 559 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 671 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 120 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WI1 GLY A 1 ? UNP Q8NFR0 ? ? 'cloning artifact' 1 1 1 1WI1 SER A 2 ? UNP Q8NFR0 ? ? 'cloning artifact' 2 2 1 1WI1 SER A 3 ? UNP Q8NFR0 ? ? 'cloning artifact' 3 3 1 1WI1 GLY A 4 ? UNP Q8NFR0 ? ? 'cloning artifact' 4 4 1 1WI1 SER A 5 ? UNP Q8NFR0 ? ? 'cloning artifact' 5 5 1 1WI1 SER A 6 ? UNP Q8NFR0 ? ? 'cloning artifact' 6 6 1 1WI1 GLY A 7 ? UNP Q8NFR0 ? ? 'cloning artifact' 7 7 1 1WI1 SER A 121 ? UNP Q8NFR0 ? ? 'cloning artifact' 121 8 1 1WI1 GLY A 122 ? UNP Q8NFR0 ? ? 'cloning artifact' 122 9 1 1WI1 PRO A 123 ? UNP Q8NFR0 ? ? 'cloning artifact' 123 10 1 1WI1 SER A 124 ? UNP Q8NFR0 ? ? 'cloning artifact' 124 11 1 1WI1 SER A 125 ? UNP Q8NFR0 ? ? 'cloning artifact' 125 12 1 1WI1 GLY A 126 ? UNP Q8NFR0 ? ? 'cloning artifact' 126 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 2 1 3D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 297 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1mM PH domain U-15N, 13C; 20mM PiNa; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer JEOL _pdbx_nmr_spectrometer.model ECA _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WI1 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WI1 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WI1 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal NMRPipe 20020425 processing 'Delaglio, F.' 1 NMRView 5.0.4 'data analysis' 'Jhonson, B.A.' 2 KUJIRA 0.896 'data analysis' 'Kobayashi, N.' 3 CYANA 2.0.17 'structure solution' 'Guentert, P.' 4 Delta 2.3 collection JEOL 5 CYANA 2.0.17 refinement 'Guentert, P.' 6 # _exptl.entry_id 1WI1 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WI1 _struct.title 'Solution structure of the PH domain of human calcium-dependent activator protein for secretion (CAPS)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WI1 _struct_keywords.pdbx_keywords ENDOCYTOSIS/EXOCYTOSIS _struct_keywords.text ;PH domain, Calcium-dependent activator protein for secretion (CAPS), PIP2 binding site, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, ENDOCYTOSIS-EXOCYTOSIS COMPLEX ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 94 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 110 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 94 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 110 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 55 ? GLN A 57 ? LEU A 55 GLN A 57 A 2 THR A 39 ? CYS A 43 ? THR A 39 CYS A 43 A 3 LYS A 26 ? SER A 36 ? LYS A 26 SER A 36 A 4 SER A 11 ? ILE A 17 ? SER A 11 ILE A 17 A 5 THR A 87 ? ALA A 91 ? THR A 87 ALA A 91 A 6 PHE A 78 ? VAL A 82 ? PHE A 78 VAL A 82 A 7 THR A 62 ? TYR A 65 ? THR A 62 TYR A 65 # _database_PDB_matrix.entry_id 1WI1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WI1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 HIS 10 10 10 HIS HIS A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 TRP 22 22 22 TRP TRP A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 MET 42 42 42 MET MET A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 TRP 101 101 101 TRP TRP A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 HIS 113 113 113 HIS HIS A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 SER 121 121 121 SER SER A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 GLY 126 126 126 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET determination method: author determined ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 23 ? ? -38.34 -38.45 2 1 LYS A 49 ? ? 71.83 48.38 3 1 LEU A 58 ? ? -85.09 31.14 4 1 TYR A 61 ? ? -37.43 135.61 5 1 LEU A 72 ? ? -56.28 106.82 6 1 GLU A 73 ? ? -119.63 64.34 7 1 PRO A 118 ? ? -69.71 -175.14 8 2 PRO A 52 ? ? -69.74 99.44 9 2 LEU A 58 ? ? -85.78 33.92 10 2 GLU A 73 ? ? -113.70 72.48 11 2 ARG A 76 ? ? -90.74 -60.55 12 2 GLN A 111 ? ? -50.50 177.19 13 2 GLN A 120 ? ? -49.69 105.65 14 2 SER A 125 ? ? -122.08 -60.24 15 3 SER A 5 ? ? -43.72 151.93 16 3 GLN A 53 ? ? -79.27 -72.51 17 3 LEU A 58 ? ? -98.01 33.87 18 3 TYR A 61 ? ? -34.53 141.25 19 3 PRO A 70 ? ? -69.71 89.10 20 3 ARG A 76 ? ? -92.66 -69.42 21 3 GLN A 111 ? ? -56.66 -178.48 22 3 PRO A 118 ? ? -69.79 -177.08 23 3 PRO A 123 ? ? -69.73 84.97 24 4 SER A 3 ? ? -35.26 151.99 25 4 TRP A 22 ? ? 47.64 28.91 26 4 ALA A 50 ? ? -34.09 132.44 27 4 PRO A 52 ? ? -69.73 93.24 28 4 LEU A 58 ? ? -96.68 38.36 29 4 ASP A 64 ? ? -171.70 149.88 30 4 GLN A 111 ? ? -51.81 177.81 31 5 TRP A 22 ? ? 37.87 38.32 32 5 PHE A 29 ? ? -69.33 98.74 33 5 PRO A 52 ? ? -69.80 95.47 34 5 LEU A 58 ? ? -93.43 35.33 35 5 ASP A 59 ? ? -79.95 43.38 36 5 TYR A 61 ? ? -39.15 144.10 37 5 LEU A 72 ? ? -36.03 102.05 38 5 GLN A 111 ? ? -59.97 174.89 39 5 PRO A 118 ? ? -69.82 -176.24 40 5 THR A 119 ? ? -174.46 137.93 41 5 SER A 121 ? ? -174.87 111.51 42 5 SER A 124 ? ? -172.62 130.28 43 6 MET A 8 ? ? -38.47 133.03 44 6 LYS A 23 ? ? -39.83 -31.60 45 6 LYS A 49 ? ? -111.13 60.63 46 6 PRO A 52 ? ? -69.72 91.86 47 6 PRO A 68 ? ? -69.79 96.59 48 6 PRO A 70 ? ? -69.77 96.08 49 6 GLU A 73 ? ? -109.45 64.36 50 6 GLN A 111 ? ? -54.48 -177.45 51 6 SER A 121 ? ? -94.51 -60.04 52 6 PRO A 123 ? ? -69.80 2.86 53 7 ARG A 46 ? ? -100.10 -65.39 54 7 GLU A 51 ? ? -37.52 147.49 55 7 GLN A 53 ? ? -36.92 -31.44 56 7 LEU A 58 ? ? -87.03 35.04 57 7 TYR A 61 ? ? -34.97 139.70 58 7 GLN A 111 ? ? -56.04 177.47 59 8 TRP A 22 ? ? 37.11 29.76 60 8 PRO A 52 ? ? -69.71 99.10 61 8 LEU A 58 ? ? -98.24 37.57 62 8 PRO A 70 ? ? -69.68 93.68 63 8 ARG A 76 ? ? -95.49 -69.13 64 9 SER A 3 ? ? -42.58 156.42 65 9 LYS A 48 ? ? -36.55 -39.95 66 9 PRO A 52 ? ? -69.67 91.43 67 9 LEU A 58 ? ? -98.56 30.51 68 9 PRO A 70 ? ? -69.76 86.09 69 9 GLU A 73 ? ? -128.54 -54.80 70 9 HIS A 113 ? ? -106.26 60.91 71 9 LYS A 114 ? ? -33.89 97.05 72 10 SER A 3 ? ? 37.13 43.94 73 10 MET A 8 ? ? 36.64 29.62 74 10 SER A 11 ? ? -174.96 127.02 75 10 LYS A 23 ? ? -39.26 -29.09 76 10 LYS A 49 ? ? -115.31 78.84 77 10 PRO A 52 ? ? -69.69 94.10 78 10 LEU A 58 ? ? -97.84 40.18 79 10 ASP A 59 ? ? -54.72 -75.20 80 10 PRO A 68 ? ? -69.77 98.44 81 10 PRO A 70 ? ? -69.72 93.35 82 10 GLN A 111 ? ? -50.61 -178.99 83 10 PRO A 123 ? ? -69.75 2.63 84 11 SER A 5 ? ? -173.25 138.21 85 11 SER A 6 ? ? -54.38 103.13 86 11 LYS A 9 ? ? -109.73 -65.23 87 11 LEU A 58 ? ? -92.16 37.82 88 11 PRO A 70 ? ? -69.80 88.53 89 11 ARG A 76 ? ? -96.88 -62.86 90 11 SER A 124 ? ? -48.61 100.07 91 12 MET A 8 ? ? -45.77 157.69 92 12 LYS A 9 ? ? -128.33 -50.58 93 12 TRP A 22 ? ? 44.20 27.02 94 12 ARG A 46 ? ? -87.63 -72.97 95 12 GLN A 53 ? ? -73.22 -70.82 96 12 LEU A 58 ? ? -82.73 37.48 97 12 PRO A 70 ? ? -69.78 97.44 98 12 PRO A 118 ? ? -69.72 -179.45 99 13 SER A 44 ? ? -93.52 58.33 100 13 TYR A 45 ? ? -40.72 100.59 101 13 LYS A 49 ? ? -122.66 -52.09 102 13 PRO A 52 ? ? -69.79 96.62 103 13 LEU A 58 ? ? -91.28 34.11 104 13 PRO A 70 ? ? -69.77 99.21 105 13 GLN A 111 ? ? -48.07 165.67 106 13 THR A 119 ? ? -117.30 67.37 107 14 MET A 8 ? ? -38.43 130.71 108 14 ARG A 46 ? ? -96.37 -64.62 109 14 LEU A 58 ? ? -90.02 35.40 110 14 TYR A 61 ? ? -38.24 142.10 111 14 GLN A 111 ? ? -47.14 172.94 112 14 PRO A 118 ? ? -69.77 -179.92 113 15 SER A 3 ? ? 37.23 51.23 114 15 MET A 8 ? ? -46.23 156.69 115 15 LYS A 9 ? ? -130.08 -62.81 116 15 LYS A 23 ? ? -39.54 -30.57 117 15 LEU A 58 ? ? -93.37 37.15 118 15 PRO A 70 ? ? -69.74 97.78 119 15 LEU A 72 ? ? -51.25 101.06 120 15 GLU A 73 ? ? -109.36 46.59 121 15 ARG A 76 ? ? -93.52 -71.81 122 15 GLN A 111 ? ? -48.28 172.93 123 15 SER A 121 ? ? -170.50 141.23 124 15 PRO A 123 ? ? -69.74 85.87 125 16 LYS A 23 ? ? -39.57 -27.11 126 16 ALA A 50 ? ? -171.35 -178.14 127 16 GLN A 53 ? ? -74.95 -75.39 128 16 LEU A 58 ? ? -86.54 34.17 129 16 TYR A 61 ? ? -34.97 143.26 130 16 PRO A 70 ? ? -69.73 99.95 131 16 GLN A 111 ? ? -54.77 -176.64 132 16 PRO A 118 ? ? -69.75 -179.66 133 17 LYS A 9 ? ? -123.20 -52.73 134 17 LYS A 49 ? ? -161.67 105.17 135 17 LEU A 58 ? ? -91.48 37.98 136 17 GLN A 111 ? ? -52.71 176.11 137 18 ALA A 50 ? ? -34.50 130.03 138 18 LEU A 58 ? ? -90.36 35.36 139 18 TYR A 61 ? ? -34.61 142.51 140 18 GLN A 111 ? ? -54.28 174.69 141 18 THR A 119 ? ? -105.13 40.33 142 18 GLN A 120 ? ? -44.02 150.10 143 19 SER A 3 ? ? -39.71 145.80 144 19 HIS A 10 ? ? -172.04 131.23 145 19 LYS A 23 ? ? -35.53 -39.23 146 19 PHE A 29 ? ? -57.22 99.55 147 19 TYR A 45 ? ? -52.39 103.56 148 19 ALA A 50 ? ? -35.71 123.30 149 19 ASP A 59 ? ? -79.64 43.84 150 19 ASP A 64 ? ? -171.44 135.89 151 19 PRO A 70 ? ? -69.81 84.51 152 19 GLN A 111 ? ? -59.65 177.37 153 19 SER A 124 ? ? -34.52 137.43 154 20 GLU A 51 ? ? -38.21 141.01 155 20 LEU A 58 ? ? -98.84 38.74 156 20 PRO A 70 ? ? -69.74 93.14 157 20 GLU A 73 ? ? -101.95 -64.18 158 20 PRO A 118 ? ? -69.80 -172.61 159 20 SER A 125 ? ? 35.06 41.98 #