data_1WI5 # _entry.id 1WI5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WI5 pdb_00001wi5 10.2210/pdb1wi5/pdb RCSB RCSB023604 ? ? WWPDB D_1000023604 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002000182.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WI5 _pdbx_database_status.recvd_initial_deposition_date 2004-05-28 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, S.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the S1 RNA binding domain from human hypothetical protein BAA11502' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, S.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RRP5 protein homolog' _entity.formula_weight 12398.979 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'S1 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Programmed cell death protein 11' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEK VKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEK VKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002000182.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 ASN n 1 10 VAL n 1 11 ASN n 1 12 ARG n 1 13 VAL n 1 14 LEU n 1 15 SER n 1 16 ALA n 1 17 GLU n 1 18 ALA n 1 19 LEU n 1 20 LYS n 1 21 PRO n 1 22 GLY n 1 23 MET n 1 24 LEU n 1 25 LEU n 1 26 THR n 1 27 GLY n 1 28 THR n 1 29 VAL n 1 30 SER n 1 31 SER n 1 32 LEU n 1 33 GLU n 1 34 ASP n 1 35 HIS n 1 36 GLY n 1 37 TYR n 1 38 LEU n 1 39 VAL n 1 40 ASP n 1 41 ILE n 1 42 GLY n 1 43 VAL n 1 44 ASP n 1 45 GLY n 1 46 THR n 1 47 ARG n 1 48 ALA n 1 49 PHE n 1 50 LEU n 1 51 PRO n 1 52 LEU n 1 53 LEU n 1 54 LYS n 1 55 ALA n 1 56 GLN n 1 57 GLU n 1 58 TYR n 1 59 ILE n 1 60 ARG n 1 61 GLN n 1 62 LYS n 1 63 ASN n 1 64 LYS n 1 65 GLY n 1 66 ALA n 1 67 LYS n 1 68 LEU n 1 69 LYS n 1 70 VAL n 1 71 GLY n 1 72 GLN n 1 73 TYR n 1 74 LEU n 1 75 ASN n 1 76 CYS n 1 77 ILE n 1 78 VAL n 1 79 GLU n 1 80 LYS n 1 81 VAL n 1 82 LYS n 1 83 GLY n 1 84 ASN n 1 85 GLY n 1 86 GLY n 1 87 VAL n 1 88 VAL n 1 89 SER n 1 90 LEU n 1 91 SER n 1 92 VAL n 1 93 GLY n 1 94 HIS n 1 95 SER n 1 96 GLU n 1 97 VAL n 1 98 SER n 1 99 THR n 1 100 ALA n 1 101 ILE n 1 102 ALA n 1 103 THR n 1 104 GLU n 1 105 GLN n 1 106 GLN n 1 107 SER n 1 108 TRP n 1 109 ASN n 1 110 LEU n 1 111 ASN n 1 112 ASN n 1 113 LEU n 1 114 SER n 1 115 GLY n 1 116 PRO n 1 117 SER n 1 118 SER n 1 119 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'RIKEN cDNA ha02717' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P030512-28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RRP5_HUMAN _struct_ref.pdbx_db_accession Q14690 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGV VSLSVGHSEVSTAIATEQQSWNLNNL ; _struct_ref.pdbx_align_begin 173 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WI5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14690 _struct_ref_seq.db_align_beg 173 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 278 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 186 _struct_ref_seq.pdbx_auth_seq_align_end 291 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WI5 GLY A 1 ? UNP Q14690 ? ? 'cloning artifact' 179 1 1 1WI5 SER A 2 ? UNP Q14690 ? ? 'cloning artifact' 180 2 1 1WI5 SER A 3 ? UNP Q14690 ? ? 'cloning artifact' 181 3 1 1WI5 GLY A 4 ? UNP Q14690 ? ? 'cloning artifact' 182 4 1 1WI5 SER A 5 ? UNP Q14690 ? ? 'cloning artifact' 183 5 1 1WI5 SER A 6 ? UNP Q14690 ? ? 'cloning artifact' 184 6 1 1WI5 GLY A 7 ? UNP Q14690 ? ? 'cloning artifact' 185 7 1 1WI5 SER A 114 ? UNP Q14690 ? ? 'cloning artifact' 292 8 1 1WI5 GLY A 115 ? UNP Q14690 ? ? 'cloning artifact' 293 9 1 1WI5 PRO A 116 ? UNP Q14690 ? ? 'cloning artifact' 294 10 1 1WI5 SER A 117 ? UNP Q14690 ? ? 'cloning artifact' 295 11 1 1WI5 SER A 118 ? UNP Q14690 ? ? 'cloning artifact' 296 12 1 1WI5 GLY A 119 ? UNP Q14690 ? ? 'cloning artifact' 297 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.2mM 13C/15N-PROTEIN 20mM phosphate buffer Na; 100mM NaCl; 1mM d-DTT; 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 700 # _pdbx_nmr_refine.entry_id 1WI5 _pdbx_nmr_refine.method 'torsion angle dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1WI5 _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 1WI5 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WI5 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 3.5 collection Bruker 1 NMRPipe 2.3 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B.A.' 3 KUJIRA 0.901 'data analysis' 'Kobayashi, N.' 4 Olivia 1.9.12 'data analysis' 'Yokochi, M.' 5 CYANA 2.0.17 'structure solution' 'Guentert, P.' 6 CYANA 2.0.17 refinement 'Guentert, P.' 7 # _exptl.entry_id 1WI5 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WI5 _struct.title 'Solution structure of the S1 RNA binding domain from human hypothetical protein BAA11502' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WI5 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'S1 domain, OB-fold, STRUCTURAL GENOMICS, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 52 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 61 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 230 _struct_conf.end_auth_comp_id GLN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 239 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 24 ? GLU A 33 ? LEU A 202 GLU A 211 A 2 GLY A 36 ? ASP A 40 ? GLY A 214 ASP A 218 A 3 ARG A 47 ? PRO A 51 ? ARG A 225 PRO A 229 A 4 GLN A 72 ? LYS A 82 ? GLN A 250 LYS A 260 A 5 VAL A 87 ? SER A 91 ? VAL A 265 SER A 269 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 28 ? N THR A 206 O ASP A 40 ? O ASP A 218 A 2 3 N TYR A 37 ? N TYR A 215 O LEU A 50 ? O LEU A 228 A 3 4 O SER A 89 ? O SER A 267 N GLU A 79 ? N GLU A 257 A 4 5 N ARG A 47 ? N ARG A 225 O VAL A 88 ? O VAL A 266 # _database_PDB_matrix.entry_id 1WI5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WI5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 179 179 GLY GLY A . n A 1 2 SER 2 180 180 SER SER A . n A 1 3 SER 3 181 181 SER SER A . n A 1 4 GLY 4 182 182 GLY GLY A . n A 1 5 SER 5 183 183 SER SER A . n A 1 6 SER 6 184 184 SER SER A . n A 1 7 GLY 7 185 185 GLY GLY A . n A 1 8 LYS 8 186 186 LYS LYS A . n A 1 9 ASN 9 187 187 ASN ASN A . n A 1 10 VAL 10 188 188 VAL VAL A . n A 1 11 ASN 11 189 189 ASN ASN A . n A 1 12 ARG 12 190 190 ARG ARG A . n A 1 13 VAL 13 191 191 VAL VAL A . n A 1 14 LEU 14 192 192 LEU LEU A . n A 1 15 SER 15 193 193 SER SER A . n A 1 16 ALA 16 194 194 ALA ALA A . n A 1 17 GLU 17 195 195 GLU GLU A . n A 1 18 ALA 18 196 196 ALA ALA A . n A 1 19 LEU 19 197 197 LEU LEU A . n A 1 20 LYS 20 198 198 LYS LYS A . n A 1 21 PRO 21 199 199 PRO PRO A . n A 1 22 GLY 22 200 200 GLY GLY A . n A 1 23 MET 23 201 201 MET MET A . n A 1 24 LEU 24 202 202 LEU LEU A . n A 1 25 LEU 25 203 203 LEU LEU A . n A 1 26 THR 26 204 204 THR THR A . n A 1 27 GLY 27 205 205 GLY GLY A . n A 1 28 THR 28 206 206 THR THR A . n A 1 29 VAL 29 207 207 VAL VAL A . n A 1 30 SER 30 208 208 SER SER A . n A 1 31 SER 31 209 209 SER SER A . n A 1 32 LEU 32 210 210 LEU LEU A . n A 1 33 GLU 33 211 211 GLU GLU A . n A 1 34 ASP 34 212 212 ASP ASP A . n A 1 35 HIS 35 213 213 HIS HIS A . n A 1 36 GLY 36 214 214 GLY GLY A . n A 1 37 TYR 37 215 215 TYR TYR A . n A 1 38 LEU 38 216 216 LEU LEU A . n A 1 39 VAL 39 217 217 VAL VAL A . n A 1 40 ASP 40 218 218 ASP ASP A . n A 1 41 ILE 41 219 219 ILE ILE A . n A 1 42 GLY 42 220 220 GLY GLY A . n A 1 43 VAL 43 221 221 VAL VAL A . n A 1 44 ASP 44 222 222 ASP ASP A . n A 1 45 GLY 45 223 223 GLY GLY A . n A 1 46 THR 46 224 224 THR THR A . n A 1 47 ARG 47 225 225 ARG ARG A . n A 1 48 ALA 48 226 226 ALA ALA A . n A 1 49 PHE 49 227 227 PHE PHE A . n A 1 50 LEU 50 228 228 LEU LEU A . n A 1 51 PRO 51 229 229 PRO PRO A . n A 1 52 LEU 52 230 230 LEU LEU A . n A 1 53 LEU 53 231 231 LEU LEU A . n A 1 54 LYS 54 232 232 LYS LYS A . n A 1 55 ALA 55 233 233 ALA ALA A . n A 1 56 GLN 56 234 234 GLN GLN A . n A 1 57 GLU 57 235 235 GLU GLU A . n A 1 58 TYR 58 236 236 TYR TYR A . n A 1 59 ILE 59 237 237 ILE ILE A . n A 1 60 ARG 60 238 238 ARG ARG A . n A 1 61 GLN 61 239 239 GLN GLN A . n A 1 62 LYS 62 240 240 LYS LYS A . n A 1 63 ASN 63 241 241 ASN ASN A . n A 1 64 LYS 64 242 242 LYS LYS A . n A 1 65 GLY 65 243 243 GLY GLY A . n A 1 66 ALA 66 244 244 ALA ALA A . n A 1 67 LYS 67 245 245 LYS LYS A . n A 1 68 LEU 68 246 246 LEU LEU A . n A 1 69 LYS 69 247 247 LYS LYS A . n A 1 70 VAL 70 248 248 VAL VAL A . n A 1 71 GLY 71 249 249 GLY GLY A . n A 1 72 GLN 72 250 250 GLN GLN A . n A 1 73 TYR 73 251 251 TYR TYR A . n A 1 74 LEU 74 252 252 LEU LEU A . n A 1 75 ASN 75 253 253 ASN ASN A . n A 1 76 CYS 76 254 254 CYS CYS A . n A 1 77 ILE 77 255 255 ILE ILE A . n A 1 78 VAL 78 256 256 VAL VAL A . n A 1 79 GLU 79 257 257 GLU GLU A . n A 1 80 LYS 80 258 258 LYS LYS A . n A 1 81 VAL 81 259 259 VAL VAL A . n A 1 82 LYS 82 260 260 LYS LYS A . n A 1 83 GLY 83 261 261 GLY GLY A . n A 1 84 ASN 84 262 262 ASN ASN A . n A 1 85 GLY 85 263 263 GLY GLY A . n A 1 86 GLY 86 264 264 GLY GLY A . n A 1 87 VAL 87 265 265 VAL VAL A . n A 1 88 VAL 88 266 266 VAL VAL A . n A 1 89 SER 89 267 267 SER SER A . n A 1 90 LEU 90 268 268 LEU LEU A . n A 1 91 SER 91 269 269 SER SER A . n A 1 92 VAL 92 270 270 VAL VAL A . n A 1 93 GLY 93 271 271 GLY GLY A . n A 1 94 HIS 94 272 272 HIS HIS A . n A 1 95 SER 95 273 273 SER SER A . n A 1 96 GLU 96 274 274 GLU GLU A . n A 1 97 VAL 97 275 275 VAL VAL A . n A 1 98 SER 98 276 276 SER SER A . n A 1 99 THR 99 277 277 THR THR A . n A 1 100 ALA 100 278 278 ALA ALA A . n A 1 101 ILE 101 279 279 ILE ILE A . n A 1 102 ALA 102 280 280 ALA ALA A . n A 1 103 THR 103 281 281 THR THR A . n A 1 104 GLU 104 282 282 GLU GLU A . n A 1 105 GLN 105 283 283 GLN GLN A . n A 1 106 GLN 106 284 284 GLN GLN A . n A 1 107 SER 107 285 285 SER SER A . n A 1 108 TRP 108 286 286 TRP TRP A . n A 1 109 ASN 109 287 287 ASN ASN A . n A 1 110 LEU 110 288 288 LEU LEU A . n A 1 111 ASN 111 289 289 ASN ASN A . n A 1 112 ASN 112 290 290 ASN ASN A . n A 1 113 LEU 113 291 291 LEU LEU A . n A 1 114 SER 114 292 292 SER SER A . n A 1 115 GLY 115 293 293 GLY GLY A . n A 1 116 PRO 116 294 294 PRO PRO A . n A 1 117 SER 117 295 295 SER SER A . n A 1 118 SER 118 296 296 SER SER A . n A 1 119 GLY 119 297 297 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_sheet # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_sheet.number_strands' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX AUTHOR DETERMIANTION METHOD: AUTHOR DETERMINED ; 700 ;SHEET AUTHOR DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 192 ? ? 33.69 46.22 2 1 LEU A 197 ? ? -47.99 154.58 3 1 LYS A 240 ? ? -99.14 -72.19 4 1 ASN A 241 ? ? -83.69 35.85 5 1 LYS A 242 ? ? 34.44 33.64 6 1 ASN A 262 ? ? -88.13 41.05 7 1 SER A 295 ? ? -173.43 142.03 8 2 VAL A 191 ? ? -76.45 47.96 9 2 LEU A 197 ? ? -40.05 155.36 10 2 LYS A 240 ? ? -101.31 -69.86 11 2 ASN A 241 ? ? -84.37 32.80 12 2 LYS A 242 ? ? 37.32 28.62 13 2 LYS A 245 ? ? -46.77 155.14 14 2 GLN A 283 ? ? -49.17 97.28 15 2 GLN A 284 ? ? -173.61 131.97 16 2 LEU A 288 ? ? -134.78 -50.72 17 2 SER A 296 ? ? -44.57 160.51 18 3 SER A 181 ? ? -49.60 151.75 19 3 VAL A 191 ? ? 34.04 53.57 20 3 LEU A 197 ? ? -42.41 160.53 21 3 ASN A 241 ? ? -83.58 35.33 22 3 LYS A 242 ? ? 34.21 33.09 23 3 ASN A 262 ? ? -95.60 40.06 24 3 SER A 292 ? ? -163.15 108.48 25 4 SER A 181 ? ? -47.00 154.24 26 4 ASN A 189 ? ? -55.12 90.12 27 4 LEU A 192 ? ? 34.59 45.36 28 4 LYS A 240 ? ? -100.17 -67.34 29 4 ASN A 241 ? ? -84.30 32.81 30 4 LYS A 242 ? ? 37.94 27.88 31 4 SER A 273 ? ? -171.38 119.82 32 4 ALA A 280 ? ? -58.05 95.62 33 4 GLU A 282 ? ? -57.12 178.32 34 4 SER A 285 ? ? -51.07 171.10 35 4 TRP A 286 ? ? -51.84 -179.75 36 5 SER A 180 ? ? -63.01 78.34 37 5 SER A 183 ? ? -57.27 172.87 38 5 LYS A 240 ? ? -99.31 -68.96 39 5 ASN A 241 ? ? -84.06 34.03 40 5 LYS A 242 ? ? 34.73 34.20 41 5 LYS A 245 ? ? -35.61 135.76 42 5 LEU A 246 ? ? -69.22 -175.71 43 5 ASN A 262 ? ? -85.85 30.64 44 5 HIS A 272 ? ? -87.38 37.05 45 5 VAL A 275 ? ? 34.97 32.12 46 5 GLN A 283 ? ? -47.06 158.89 47 5 TRP A 286 ? ? -118.02 68.26 48 5 PRO A 294 ? ? -69.75 84.13 49 6 SER A 180 ? ? -90.33 50.43 50 6 ASN A 189 ? ? -42.05 100.53 51 6 VAL A 191 ? ? -118.90 61.45 52 6 LYS A 240 ? ? -98.10 -74.93 53 6 ALA A 278 ? ? -172.56 137.79 54 6 GLN A 284 ? ? -34.60 115.43 55 6 SER A 296 ? ? -36.49 108.74 56 7 VAL A 191 ? ? 37.51 39.13 57 7 LYS A 240 ? ? -101.82 -69.93 58 7 ASN A 241 ? ? -84.16 33.52 59 7 LYS A 242 ? ? 34.63 34.95 60 7 LYS A 245 ? ? -37.22 144.72 61 7 HIS A 272 ? ? -35.76 132.38 62 7 GLU A 274 ? ? -66.06 98.14 63 7 SER A 276 ? ? -35.36 126.02 64 8 LYS A 186 ? ? -43.91 157.71 65 8 LEU A 192 ? ? -66.08 83.07 66 8 LEU A 197 ? ? -60.01 -179.76 67 8 LYS A 240 ? ? -107.99 -63.39 68 8 LYS A 242 ? ? 35.82 30.38 69 8 LEU A 246 ? ? -64.23 -175.46 70 8 ASN A 262 ? ? -86.71 37.54 71 8 SER A 273 ? ? 35.50 41.28 72 8 GLU A 274 ? ? -35.65 106.92 73 8 SER A 276 ? ? -66.59 80.54 74 9 LEU A 192 ? ? -39.95 111.23 75 9 ASP A 222 ? ? -88.36 46.45 76 9 LYS A 240 ? ? -107.75 -64.91 77 9 LYS A 242 ? ? 32.74 34.96 78 9 ALA A 244 ? ? -34.42 120.37 79 9 VAL A 275 ? ? -85.46 31.68 80 9 SER A 276 ? ? -82.36 40.58 81 9 PRO A 294 ? ? -69.77 -174.12 82 9 SER A 295 ? ? -133.79 -57.07 83 10 ASN A 189 ? ? 37.84 51.79 84 10 VAL A 191 ? ? -103.49 64.47 85 10 LEU A 197 ? ? -60.85 -178.74 86 10 LYS A 242 ? ? 34.09 32.34 87 10 LYS A 245 ? ? -34.19 132.80 88 10 LEU A 246 ? ? -65.44 -176.56 89 10 GLU A 274 ? ? -50.41 98.95 90 10 THR A 277 ? ? 38.64 40.00 91 10 GLN A 283 ? ? -164.01 118.33 92 11 SER A 180 ? ? -60.86 98.59 93 11 VAL A 191 ? ? -95.00 44.04 94 11 LYS A 240 ? ? -105.88 -67.08 95 11 LYS A 242 ? ? 37.44 28.11 96 11 LYS A 245 ? ? -39.67 138.44 97 11 SER A 276 ? ? -55.61 176.08 98 11 GLN A 283 ? ? -51.41 100.02 99 11 GLN A 284 ? ? -39.55 101.95 100 12 LEU A 197 ? ? -58.44 -177.60 101 12 LYS A 198 ? ? -170.26 142.40 102 12 LYS A 240 ? ? -103.94 -68.36 103 12 ASN A 241 ? ? -84.17 33.06 104 12 LYS A 242 ? ? 34.48 32.91 105 12 SER A 273 ? ? 70.66 50.92 106 12 LEU A 288 ? ? -87.31 36.86 107 12 SER A 295 ? ? -34.61 95.77 108 13 SER A 180 ? ? -172.60 120.65 109 13 ARG A 190 ? ? -34.68 149.66 110 13 SER A 193 ? ? -45.17 159.75 111 13 LEU A 197 ? ? -45.81 161.32 112 13 LYS A 242 ? ? 38.25 26.66 113 13 LEU A 246 ? ? -62.14 -179.90 114 13 THR A 277 ? ? -54.61 109.22 115 13 ALA A 278 ? ? -36.30 113.44 116 13 PRO A 294 ? ? -69.80 90.70 117 14 SER A 183 ? ? -102.61 42.76 118 14 VAL A 191 ? ? -114.91 72.65 119 14 LYS A 240 ? ? -100.90 -75.14 120 14 ASN A 241 ? ? -80.66 41.86 121 14 LYS A 242 ? ? 33.28 34.48 122 14 LYS A 245 ? ? -33.85 146.59 123 14 ASN A 262 ? ? -84.26 39.34 124 14 HIS A 272 ? ? -106.76 73.21 125 14 GLU A 274 ? ? -59.15 97.57 126 14 THR A 277 ? ? 28.98 40.54 127 14 LEU A 291 ? ? -50.12 173.68 128 14 SER A 296 ? ? -87.55 42.08 129 15 ASN A 189 ? ? -171.10 131.04 130 15 VAL A 191 ? ? -110.64 72.81 131 15 SER A 193 ? ? -46.56 172.86 132 15 LYS A 242 ? ? 38.06 27.19 133 15 HIS A 272 ? ? -37.31 137.36 134 15 THR A 277 ? ? 33.17 41.77 135 15 ALA A 278 ? ? -91.00 34.17 136 15 GLU A 282 ? ? -170.35 140.52 137 15 TRP A 286 ? ? -44.11 150.52 138 15 SER A 292 ? ? -38.43 116.33 139 15 PRO A 294 ? ? -69.77 -173.13 140 16 ASN A 189 ? ? 35.23 45.84 141 16 ARG A 190 ? ? -96.18 38.22 142 16 VAL A 191 ? ? 39.67 27.15 143 16 LYS A 240 ? ? -99.44 -71.13 144 16 ASN A 241 ? ? -83.75 35.27 145 16 LYS A 242 ? ? 36.41 30.55 146 16 LYS A 245 ? ? -48.81 162.03 147 16 ASN A 262 ? ? -82.68 41.33 148 16 PRO A 294 ? ? -69.70 -175.63 149 17 SER A 184 ? ? -46.09 165.31 150 17 ASN A 187 ? ? -161.50 106.67 151 17 ASN A 189 ? ? 38.93 48.53 152 17 ARG A 190 ? ? -36.64 123.28 153 17 LEU A 197 ? ? -67.25 -175.60 154 17 LYS A 240 ? ? -107.38 -63.88 155 17 LYS A 242 ? ? 34.77 31.79 156 17 LEU A 246 ? ? -58.94 -175.16 157 17 ASN A 262 ? ? -85.69 35.02 158 17 HIS A 272 ? ? -83.78 40.93 159 17 SER A 285 ? ? -171.08 105.74 160 17 ASN A 289 ? ? -166.34 113.31 161 18 SER A 180 ? ? -129.90 -60.72 162 18 VAL A 188 ? ? -38.22 -29.20 163 18 VAL A 191 ? ? -93.43 37.62 164 18 LEU A 197 ? ? -47.07 161.37 165 18 LYS A 240 ? ? -99.66 -60.03 166 18 LYS A 242 ? ? 36.99 28.23 167 18 ASN A 262 ? ? -80.12 45.70 168 18 HIS A 272 ? ? -44.34 152.94 169 18 SER A 273 ? ? -44.83 163.04 170 18 LEU A 291 ? ? -69.33 89.89 171 18 SER A 295 ? ? -52.24 96.92 172 19 SER A 184 ? ? -54.93 173.81 173 19 VAL A 191 ? ? -111.46 71.07 174 19 LYS A 240 ? ? -101.50 -69.78 175 19 ASN A 241 ? ? -83.85 35.60 176 19 LYS A 242 ? ? 34.65 32.67 177 19 ASN A 262 ? ? -84.53 45.44 178 19 HIS A 272 ? ? 42.55 28.47 179 19 ALA A 278 ? ? -43.60 165.98 180 19 PRO A 294 ? ? -69.76 -178.60 181 20 ARG A 190 ? ? -36.34 147.74 182 20 LEU A 192 ? ? -59.53 107.72 183 20 LYS A 242 ? ? 38.52 26.14 184 20 LYS A 245 ? ? -38.21 133.13 185 20 SER A 273 ? ? -53.74 173.54 186 20 SER A 276 ? ? -49.32 151.09 187 20 THR A 281 ? ? 45.79 28.60 188 20 ASN A 287 ? ? -48.64 157.98 #