HEADER SIGNALING PROTEIN 29-MAY-04 1WJM TITLE SOLUTION STRUCTURE OF PLECKSTRIN HOMOLOGY DOMAIN OF HUMAN BETA III TITLE 2 SPECTRIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SPECTRIN III; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: BETA-III SPECTRIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAZUSA CDNA HF00409; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P030428-89; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PH DOMAIN, SIGNAL TRANSDUCTION, STRUCTURAL GENOMICS, SPECTRIN BETA KEYWDS 2 CHAIN, BRAIN 2, KIAA0302, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 3 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 1WJM 1 REMARK REVDAT 3 02-MAR-22 1WJM 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WJM 1 VERSN REVDAT 1 29-NOV-04 1WJM 0 JRNL AUTH M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PLECKSTRIN HOMOLOGY DOMAIN OF HUMAN JRNL TITL 2 BETA III SPECTRIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WJM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023646. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.05MM PH DOMAIN U-15N,13C; 20MM REMARK 210 PHOSPHATE BUFFER NA; 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; ECA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DELTA 2.3, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.8996, REMARK 210 CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 89 O LYS A 93 1.50 REMARK 500 H GLN A 71 O GLY A 88 1.50 REMARK 500 O TRP A 108 H VAL A 112 1.52 REMARK 500 O VAL A 38 H GLY A 45 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -58.42 -161.49 REMARK 500 1 SER A 5 100.00 64.68 REMARK 500 1 GLU A 19 -60.51 -94.72 REMARK 500 1 ALA A 27 -173.29 -53.61 REMARK 500 1 ALA A 28 -75.71 -108.65 REMARK 500 1 ARG A 40 142.19 -175.24 REMARK 500 1 LEU A 67 34.68 -92.97 REMARK 500 1 ARG A 69 22.81 80.37 REMARK 500 1 ASP A 77 -48.01 171.52 REMARK 500 1 TYR A 78 96.89 -41.95 REMARK 500 1 LYS A 80 -55.25 -173.24 REMARK 500 1 ALA A 103 -71.69 -69.41 REMARK 500 2 ALA A 28 -75.40 -68.22 REMARK 500 2 ARG A 40 145.41 -172.96 REMARK 500 2 LEU A 67 36.07 -91.80 REMARK 500 2 ALA A 75 75.23 -108.27 REMARK 500 2 TYR A 78 99.42 -39.29 REMARK 500 2 LYS A 80 -60.23 178.31 REMARK 500 2 ALA A 103 -70.50 -60.79 REMARK 500 2 SER A 118 94.25 -59.30 REMARK 500 2 SER A 122 -58.54 -131.10 REMARK 500 3 SER A 2 -57.89 -126.25 REMARK 500 3 SER A 3 150.35 60.59 REMARK 500 3 SER A 5 166.76 55.91 REMARK 500 3 SER A 6 -57.81 -170.50 REMARK 500 3 GLU A 19 -50.12 -124.50 REMARK 500 3 ALA A 28 -72.02 -40.63 REMARK 500 3 ARG A 30 65.59 -113.04 REMARK 500 3 ARG A 40 140.86 -172.77 REMARK 500 3 LEU A 67 45.41 -87.64 REMARK 500 3 ARG A 69 16.66 57.90 REMARK 500 3 ALA A 75 66.56 -102.16 REMARK 500 3 TYR A 78 98.69 -37.27 REMARK 500 3 LYS A 80 -81.64 -77.29 REMARK 500 3 ARG A 81 -177.71 -67.78 REMARK 500 3 ASP A 91 43.54 -104.29 REMARK 500 3 ALA A 103 -71.55 -55.81 REMARK 500 3 SER A 118 101.39 -52.42 REMARK 500 4 SER A 5 76.69 61.31 REMARK 500 4 SER A 6 150.97 178.53 REMARK 500 4 ALA A 22 173.47 173.58 REMARK 500 4 ALA A 28 -71.15 -40.03 REMARK 500 4 ARG A 30 58.78 -119.12 REMARK 500 4 ARG A 40 144.52 -172.32 REMARK 500 4 GLU A 62 160.34 -49.85 REMARK 500 4 LEU A 67 30.34 -92.60 REMARK 500 4 ALA A 75 53.41 -105.76 REMARK 500 4 ASP A 101 -175.99 -171.43 REMARK 500 4 ALA A 103 -71.39 -55.21 REMARK 500 4 SER A 122 -61.12 -133.74 REMARK 500 REMARK 500 THIS ENTRY HAS 250 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002200294.1 RELATED DB: TARGETDB DBREF 1WJM A 8 117 UNP O15020 SPTN2_HUMAN 2219 2328 SEQADV 1WJM GLY A 1 UNP O15020 CLONING ARTIFACT SEQADV 1WJM SER A 2 UNP O15020 CLONING ARTIFACT SEQADV 1WJM SER A 3 UNP O15020 CLONING ARTIFACT SEQADV 1WJM GLY A 4 UNP O15020 CLONING ARTIFACT SEQADV 1WJM SER A 5 UNP O15020 CLONING ARTIFACT SEQADV 1WJM SER A 6 UNP O15020 CLONING ARTIFACT SEQADV 1WJM GLY A 7 UNP O15020 CLONING ARTIFACT SEQADV 1WJM SER A 118 UNP O15020 CLONING ARTIFACT SEQADV 1WJM GLY A 119 UNP O15020 CLONING ARTIFACT SEQADV 1WJM PRO A 120 UNP O15020 CLONING ARTIFACT SEQADV 1WJM SER A 121 UNP O15020 CLONING ARTIFACT SEQADV 1WJM SER A 122 UNP O15020 CLONING ARTIFACT SEQADV 1WJM GLY A 123 UNP O15020 CLONING ARTIFACT SEQRES 1 A 123 GLY SER SER GLY SER SER GLY GLU GLN MET GLU GLY MET SEQRES 2 A 123 LEU CYS ARG LYS GLN GLU MET GLU ALA PHE GLY LYS LYS SEQRES 3 A 123 ALA ALA ASN ARG SER TRP GLN ASN VAL TYR CYS VAL LEU SEQRES 4 A 123 ARG ARG GLY SER LEU GLY PHE TYR LYS ASP ALA LYS ALA SEQRES 5 A 123 ALA SER ALA GLY VAL PRO TYR HIS GLY GLU VAL PRO VAL SEQRES 6 A 123 SER LEU ALA ARG ALA GLN GLY SER VAL ALA PHE ASP TYR SEQRES 7 A 123 ARG LYS ARG LYS HIS VAL PHE LYS LEU GLY LEU GLN ASP SEQRES 8 A 123 GLY LYS GLU TYR LEU PHE GLN ALA LYS ASP GLU ALA GLU SEQRES 9 A 123 MET SER SER TRP LEU ARG VAL VAL ASN ALA ALA ILE ALA SEQRES 10 A 123 SER GLY PRO SER SER GLY HELIX 1 1 ASP A 49 SER A 54 1 6 HELIX 2 2 ASP A 101 GLY A 119 1 19 SHEET 1 A 5 LYS A 25 LYS A 26 0 SHEET 2 A 5 MET A 10 ALA A 22 -1 N ALA A 22 O LYS A 25 SHEET 3 A 5 GLN A 33 ARG A 40 -1 O LEU A 39 N MET A 10 SHEET 4 A 5 SER A 43 TYR A 47 -1 O GLY A 45 N VAL A 38 SHEET 5 A 5 VAL A 65 SER A 66 -1 O VAL A 65 N LEU A 44 SHEET 1 B 5 LYS A 25 LYS A 26 0 SHEET 2 B 5 MET A 10 ALA A 22 -1 N ALA A 22 O LYS A 25 SHEET 3 B 5 GLU A 94 GLN A 98 -1 O GLU A 94 N GLU A 19 SHEET 4 B 5 VAL A 84 GLY A 88 -1 N LEU A 87 O TYR A 95 SHEET 5 B 5 GLN A 71 VAL A 74 -1 N GLN A 71 O GLY A 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1