data_1WK8 # _entry.id 1WK8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WK8 pdb_00001wk8 10.2210/pdb1wk8/pdb RCSB RCSB023668 ? ? WWPDB D_1000023668 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003000883.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WK8 _pdbx_database_status.recvd_initial_deposition_date 2004-05-30 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fukunaga, R.' 1 'Yokoyama, S.' 2 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 3 # _citation.id primary _citation.title 'Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 359 _citation.page_first 901 _citation.page_last 912 _citation.year 2006 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16697013 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2006.04.025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fukunaga, R.' 1 ? primary 'Yokoyama, S.' 2 ? # _cell.entry_id 1WK8 _cell.length_a 101.998 _cell.length_b 101.998 _cell.length_c 84.883 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1WK8 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Isoleucyl-tRNA synthetase' 21619.736 2 6.1.1.5 ? 'CP1 domain' ? 2 non-polymer syn "5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE" 445.451 1 ? ? ? ? 3 water nat water 18.015 274 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Isoleucine--tRNA ligase, IleRS, Fragment' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTP VLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPF KGLYFREANRAILRDLRGRGLLFKEESYLHSYPH ; _entity_poly.pdbx_seq_one_letter_code_can ;MGYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTP VLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPF KGLYFREANRAILRDLRGRGLLFKEESYLHSYPH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ttk003000883.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 TYR n 1 4 LYS n 1 5 GLU n 1 6 ILE n 1 7 GLN n 1 8 ASP n 1 9 PRO n 1 10 SER n 1 11 VAL n 1 12 TYR n 1 13 VAL n 1 14 ARG n 1 15 PHE n 1 16 PRO n 1 17 LEU n 1 18 LYS n 1 19 GLU n 1 20 PRO n 1 21 LYS n 1 22 LYS n 1 23 LEU n 1 24 GLY n 1 25 LEU n 1 26 GLU n 1 27 LYS n 1 28 ALA n 1 29 SER n 1 30 LEU n 1 31 LEU n 1 32 ILE n 1 33 TRP n 1 34 THR n 1 35 THR n 1 36 THR n 1 37 PRO n 1 38 TRP n 1 39 THR n 1 40 LEU n 1 41 PRO n 1 42 GLY n 1 43 ASN n 1 44 VAL n 1 45 ALA n 1 46 ALA n 1 47 ALA n 1 48 VAL n 1 49 HIS n 1 50 PRO n 1 51 GLU n 1 52 TYR n 1 53 THR n 1 54 TYR n 1 55 ALA n 1 56 ALA n 1 57 PHE n 1 58 GLN n 1 59 VAL n 1 60 GLY n 1 61 ASP n 1 62 GLU n 1 63 ALA n 1 64 LEU n 1 65 ILE n 1 66 LEU n 1 67 GLU n 1 68 GLU n 1 69 GLY n 1 70 LEU n 1 71 GLY n 1 72 ARG n 1 73 LYS n 1 74 LEU n 1 75 LEU n 1 76 GLY n 1 77 GLU n 1 78 GLY n 1 79 THR n 1 80 PRO n 1 81 VAL n 1 82 LEU n 1 83 LYS n 1 84 THR n 1 85 PHE n 1 86 PRO n 1 87 GLY n 1 88 LYS n 1 89 ALA n 1 90 LEU n 1 91 GLU n 1 92 GLY n 1 93 LEU n 1 94 PRO n 1 95 TYR n 1 96 THR n 1 97 PRO n 1 98 PRO n 1 99 TYR n 1 100 PRO n 1 101 GLN n 1 102 ALA n 1 103 LEU n 1 104 GLU n 1 105 LYS n 1 106 GLY n 1 107 TYR n 1 108 PHE n 1 109 VAL n 1 110 VAL n 1 111 LEU n 1 112 ALA n 1 113 ASP n 1 114 TYR n 1 115 VAL n 1 116 SER n 1 117 GLN n 1 118 GLU n 1 119 ASP n 1 120 GLY n 1 121 THR n 1 122 GLY n 1 123 ILE n 1 124 VAL n 1 125 HIS n 1 126 GLN n 1 127 ALA n 1 128 PRO n 1 129 ALA n 1 130 PHE n 1 131 GLY n 1 132 ALA n 1 133 GLU n 1 134 ASP n 1 135 LEU n 1 136 GLU n 1 137 THR n 1 138 ALA n 1 139 ARG n 1 140 VAL n 1 141 TYR n 1 142 GLY n 1 143 LEU n 1 144 PRO n 1 145 LEU n 1 146 LEU n 1 147 LYS n 1 148 THR n 1 149 VAL n 1 150 ASP n 1 151 GLU n 1 152 GLU n 1 153 GLY n 1 154 LYS n 1 155 LEU n 1 156 LEU n 1 157 VAL n 1 158 GLU n 1 159 PRO n 1 160 PHE n 1 161 LYS n 1 162 GLY n 1 163 LEU n 1 164 TYR n 1 165 PHE n 1 166 ARG n 1 167 GLU n 1 168 ALA n 1 169 ASN n 1 170 ARG n 1 171 ALA n 1 172 ILE n 1 173 LEU n 1 174 ARG n 1 175 ASP n 1 176 LEU n 1 177 ARG n 1 178 GLY n 1 179 ARG n 1 180 GLY n 1 181 LEU n 1 182 LEU n 1 183 PHE n 1 184 LYS n 1 185 GLU n 1 186 GLU n 1 187 SER n 1 188 TYR n 1 189 LEU n 1 190 HIS n 1 191 SER n 1 192 TYR n 1 193 PRO n 1 194 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ILES _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET26b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYI_THET8 _struct_ref.pdbx_db_accession P56690 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GYKEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQV LKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFK GLYFREANRAILRDLRGRGLLFKEESYLHSYPH ; _struct_ref.pdbx_align_begin 196 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WK8 A 2 ? 194 ? P56690 196 ? 388 ? 196 388 2 1 1WK8 B 2 ? 194 ? P56690 196 ? 388 ? 196 388 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WK8 MET A 1 ? UNP P56690 ? ? 'initiating methionine' 195 1 1 1WK8 PRO A 80 ? UNP P56690 GLN 274 'SEE REMARK 999' 274 2 2 1WK8 MET B 1 ? UNP P56690 ? ? 'initiating methionine' 195 3 2 1WK8 PRO B 80 ? UNP P56690 GLN 274 'SEE REMARK 999' 274 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 VMS 'L-peptide linking' . "5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE" ? 'C15 H23 N7 O7 S' 445.451 # _exptl.entry_id 1WK8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.55 _exptl_crystal.density_percent_sol 51.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.7 _exptl_crystal_grow.pdbx_details ;50mM ADA (pH6.7), 2M ammnium sulphate, 5% 2-propanol, 5mM 5'O-[N-(L-valyl)sulphamoyl]adenosine, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 1WK8 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.7 _reflns.number_obs 49525 _reflns.number_all 49725 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 25.3 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1WK8 _refine.ls_number_reflns_obs 49525 _refine.ls_number_reflns_all 49725 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1816280.05 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.62 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 99.6 _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.249 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 2512 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 41.0 _refine.aniso_B[1][1] -0.75 _refine.aniso_B[2][2] -0.75 _refine.aniso_B[3][3] 1.50 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.365608 _refine.solvent_model_param_bsol 70.9979 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1UDZ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1WK8 _refine_analyze.Luzzati_coordinate_error_obs 0.21 _refine_analyze.Luzzati_sigma_a_obs 0.23 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2901 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 274 _refine_hist.number_atoms_total 3205 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 45.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.96 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 5.02 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.93 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 7.96 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 10.40 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.81 _refine_ls_shell.number_reflns_R_work 7665 _refine_ls_shell.R_factor_R_work 0.336 _refine_ls_shell.percent_reflns_obs 99.6 _refine_ls_shell.R_factor_R_free 0.344 _refine_ls_shell.R_factor_R_free_error 0.017 _refine_ls_shell.percent_reflns_R_free 5.2 _refine_ls_shell.number_reflns_R_free 424 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 VALAMS_REP.PARAM VALAMS_REP.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1WK8 _struct.title 'Isoleucyl-tRNA synthetase editing domain complexed with the pre-transfer editing substrate analogue, Val-AMS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WK8 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;editing, cp1, isoleucyl-trna synthetase, fidelity, thermus thermophilus, translation, amino acid, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, NPPSFA, National Project on Protein Structural and Functional Analyses, LIGASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 19 ? GLY A 24 ? GLU A 213 GLY A 218 5 ? 6 HELX_P HELX_P2 2 THR A 36 ? ASN A 43 ? THR A 230 ASN A 237 5 ? 8 HELX_P HELX_P3 3 GLU A 68 ? GLY A 76 ? GLU A 262 GLY A 270 1 ? 9 HELX_P HELX_P4 4 LYS A 88 ? GLU A 91 ? LYS A 282 GLU A 285 5 ? 4 HELX_P HELX_P5 5 ALA A 127 ? PHE A 130 ? ALA A 321 PHE A 324 5 ? 4 HELX_P HELX_P6 6 GLY A 131 ? TYR A 141 ? GLY A 325 TYR A 335 1 ? 11 HELX_P HELX_P7 7 TYR A 164 ? ARG A 179 ? TYR A 358 ARG A 373 1 ? 16 HELX_P HELX_P8 8 GLU B 19 ? GLY B 24 ? GLU B 213 GLY B 218 5 ? 6 HELX_P HELX_P9 9 THR B 36 ? ASN B 43 ? THR B 230 ASN B 237 5 ? 8 HELX_P HELX_P10 10 GLU B 68 ? GLY B 76 ? GLU B 262 GLY B 270 1 ? 9 HELX_P HELX_P11 11 GLY B 87 ? GLU B 91 ? GLY B 281 GLU B 285 1 ? 5 HELX_P HELX_P12 12 GLY B 131 ? GLY B 142 ? GLY B 325 GLY B 336 1 ? 12 HELX_P HELX_P13 13 TYR B 164 ? ARG B 179 ? TYR B 358 ARG B 373 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 158 A . ? GLU 352 A PRO 159 A ? PRO 353 A 1 0.97 2 GLU 158 B . ? GLU 352 B PRO 159 B ? PRO 353 B 1 0.33 3 TYR 192 B . ? TYR 386 B PRO 193 B ? PRO 387 B 1 0.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 3 ? C ? 6 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 81 ? PRO A 86 ? VAL A 275 PRO A 280 A 2 THR A 53 ? VAL A 59 ? THR A 247 VAL A 253 A 3 GLU A 62 ? GLU A 67 ? GLU A 256 GLU A 261 A 4 ALA A 28 ? THR A 34 ? ALA A 222 THR A 228 A 5 SER A 10 ? PRO A 16 ? SER A 204 PRO A 210 A 6 LEU A 182 ? GLU A 186 ? LEU A 376 GLU A 380 B 1 VAL A 109 ? LEU A 111 ? VAL A 303 LEU A 305 B 2 ALA A 45 ? VAL A 48 ? ALA A 239 VAL A 242 B 3 VAL A 124 ? GLN A 126 ? VAL A 318 GLN A 320 C 1 VAL B 81 ? PRO B 86 ? VAL B 275 PRO B 280 C 2 THR B 53 ? VAL B 59 ? THR B 247 VAL B 253 C 3 GLU B 62 ? GLU B 67 ? GLU B 256 GLU B 261 C 4 ALA B 28 ? THR B 34 ? ALA B 222 THR B 228 C 5 SER B 10 ? PRO B 16 ? SER B 204 PRO B 210 C 6 LEU B 182 ? GLU B 186 ? LEU B 376 GLU B 380 D 1 VAL B 109 ? LEU B 111 ? VAL B 303 LEU B 305 D 2 ALA B 45 ? VAL B 48 ? ALA B 239 VAL B 242 D 3 ILE B 123 ? GLN B 126 ? ILE B 317 GLN B 320 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 85 ? O PHE A 279 N TYR A 54 ? N TYR A 248 A 2 3 N PHE A 57 ? N PHE A 251 O LEU A 64 ? O LEU A 258 A 3 4 O ILE A 65 ? O ILE A 259 N SER A 29 ? N SER A 223 A 4 5 O ILE A 32 ? O ILE A 226 N VAL A 13 ? N VAL A 207 A 5 6 N TYR A 12 ? N TYR A 206 O PHE A 183 ? O PHE A 377 B 1 2 O VAL A 110 ? O VAL A 304 N ALA A 46 ? N ALA A 240 B 2 3 N ALA A 47 ? N ALA A 241 O VAL A 124 ? O VAL A 318 C 1 2 O PHE B 85 ? O PHE B 279 N TYR B 54 ? N TYR B 248 C 2 3 N VAL B 59 ? N VAL B 253 O GLU B 62 ? O GLU B 256 C 3 4 O ILE B 65 ? O ILE B 259 N SER B 29 ? N SER B 223 C 4 5 O ILE B 32 ? O ILE B 226 N VAL B 13 ? N VAL B 207 C 5 6 N SER B 10 ? N SER B 204 O GLU B 186 ? O GLU B 380 D 1 2 O VAL B 110 ? O VAL B 304 N ALA B 46 ? N ALA B 240 D 2 3 N ALA B 47 ? N ALA B 241 O VAL B 124 ? O VAL B 318 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id VMS _struct_site.pdbx_auth_seq_id 999 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 17 _struct_site.details 'BINDING SITE FOR RESIDUE VMS B 999' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 TRP B 33 ? TRP B 227 . ? 1_555 ? 2 AC1 17 THR B 34 ? THR B 228 . ? 1_555 ? 3 AC1 17 THR B 35 ? THR B 229 . ? 1_555 ? 4 AC1 17 THR B 36 ? THR B 230 . ? 1_555 ? 5 AC1 17 TYR B 114 ? TYR B 308 . ? 1_555 ? 6 AC1 17 VAL B 115 ? VAL B 309 . ? 1_555 ? 7 AC1 17 SER B 116 ? SER B 310 . ? 1_555 ? 8 AC1 17 VAL B 124 ? VAL B 318 . ? 1_555 ? 9 AC1 17 HIS B 125 ? HIS B 319 . ? 1_555 ? 10 AC1 17 PHE B 130 ? PHE B 324 . ? 1_555 ? 11 AC1 17 GLU B 133 ? GLU B 327 . ? 8_665 ? 12 AC1 17 ASP B 134 ? ASP B 328 . ? 1_555 ? 13 AC1 17 HOH E . ? HOH B 1027 . ? 1_555 ? 14 AC1 17 HOH E . ? HOH B 1029 . ? 1_555 ? 15 AC1 17 HOH E . ? HOH B 1033 . ? 1_555 ? 16 AC1 17 HOH E . ? HOH B 1066 . ? 8_665 ? 17 AC1 17 HOH E . ? HOH B 1066 . ? 1_555 ? # _database_PDB_matrix.entry_id 1WK8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WK8 _atom_sites.fract_transf_matrix[1][1] 0.009804 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009804 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011781 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 195 ? ? ? A . n A 1 2 GLY 2 196 ? ? ? A . n A 1 3 TYR 3 197 ? ? ? A . n A 1 4 LYS 4 198 ? ? ? A . n A 1 5 GLU 5 199 ? ? ? A . n A 1 6 ILE 6 200 ? ? ? A . n A 1 7 GLN 7 201 201 GLN GLN A . n A 1 8 ASP 8 202 202 ASP ASP A . n A 1 9 PRO 9 203 203 PRO PRO A . n A 1 10 SER 10 204 204 SER SER A . n A 1 11 VAL 11 205 205 VAL VAL A . n A 1 12 TYR 12 206 206 TYR TYR A . n A 1 13 VAL 13 207 207 VAL VAL A . n A 1 14 ARG 14 208 208 ARG ARG A . n A 1 15 PHE 15 209 209 PHE PHE A . n A 1 16 PRO 16 210 210 PRO PRO A . n A 1 17 LEU 17 211 211 LEU LEU A . n A 1 18 LYS 18 212 212 LYS LYS A . n A 1 19 GLU 19 213 213 GLU GLU A . n A 1 20 PRO 20 214 214 PRO PRO A . n A 1 21 LYS 21 215 215 LYS LYS A . n A 1 22 LYS 22 216 216 LYS LYS A . n A 1 23 LEU 23 217 217 LEU LEU A . n A 1 24 GLY 24 218 218 GLY GLY A . n A 1 25 LEU 25 219 219 LEU LEU A . n A 1 26 GLU 26 220 220 GLU GLU A . n A 1 27 LYS 27 221 221 LYS LYS A . n A 1 28 ALA 28 222 222 ALA ALA A . n A 1 29 SER 29 223 223 SER SER A . n A 1 30 LEU 30 224 224 LEU LEU A . n A 1 31 LEU 31 225 225 LEU LEU A . n A 1 32 ILE 32 226 226 ILE ILE A . n A 1 33 TRP 33 227 227 TRP TRP A . n A 1 34 THR 34 228 228 THR THR A . n A 1 35 THR 35 229 229 THR THR A . n A 1 36 THR 36 230 230 THR THR A . n A 1 37 PRO 37 231 231 PRO PRO A . n A 1 38 TRP 38 232 232 TRP TRP A . n A 1 39 THR 39 233 233 THR THR A . n A 1 40 LEU 40 234 234 LEU LEU A . n A 1 41 PRO 41 235 235 PRO PRO A . n A 1 42 GLY 42 236 236 GLY GLY A . n A 1 43 ASN 43 237 237 ASN ASN A . n A 1 44 VAL 44 238 238 VAL VAL A . n A 1 45 ALA 45 239 239 ALA ALA A . n A 1 46 ALA 46 240 240 ALA ALA A . n A 1 47 ALA 47 241 241 ALA ALA A . n A 1 48 VAL 48 242 242 VAL VAL A . n A 1 49 HIS 49 243 243 HIS HIS A . n A 1 50 PRO 50 244 244 PRO PRO A . n A 1 51 GLU 51 245 245 GLU GLU A . n A 1 52 TYR 52 246 246 TYR TYR A . n A 1 53 THR 53 247 247 THR THR A . n A 1 54 TYR 54 248 248 TYR TYR A . n A 1 55 ALA 55 249 249 ALA ALA A . n A 1 56 ALA 56 250 250 ALA ALA A . n A 1 57 PHE 57 251 251 PHE PHE A . n A 1 58 GLN 58 252 252 GLN GLN A . n A 1 59 VAL 59 253 253 VAL VAL A . n A 1 60 GLY 60 254 254 GLY GLY A . n A 1 61 ASP 61 255 255 ASP ASP A . n A 1 62 GLU 62 256 256 GLU GLU A . n A 1 63 ALA 63 257 257 ALA ALA A . n A 1 64 LEU 64 258 258 LEU LEU A . n A 1 65 ILE 65 259 259 ILE ILE A . n A 1 66 LEU 66 260 260 LEU LEU A . n A 1 67 GLU 67 261 261 GLU GLU A . n A 1 68 GLU 68 262 262 GLU GLU A . n A 1 69 GLY 69 263 263 GLY GLY A . n A 1 70 LEU 70 264 264 LEU LEU A . n A 1 71 GLY 71 265 265 GLY GLY A . n A 1 72 ARG 72 266 266 ARG ARG A . n A 1 73 LYS 73 267 267 LYS LYS A . n A 1 74 LEU 74 268 268 LEU LEU A . n A 1 75 LEU 75 269 269 LEU LEU A . n A 1 76 GLY 76 270 270 GLY GLY A . n A 1 77 GLU 77 271 271 GLU GLU A . n A 1 78 GLY 78 272 272 GLY GLY A . n A 1 79 THR 79 273 273 THR THR A . n A 1 80 PRO 80 274 274 PRO PRO A . n A 1 81 VAL 81 275 275 VAL VAL A . n A 1 82 LEU 82 276 276 LEU LEU A . n A 1 83 LYS 83 277 277 LYS LYS A . n A 1 84 THR 84 278 278 THR THR A . n A 1 85 PHE 85 279 279 PHE PHE A . n A 1 86 PRO 86 280 280 PRO PRO A . n A 1 87 GLY 87 281 281 GLY GLY A . n A 1 88 LYS 88 282 282 LYS LYS A . n A 1 89 ALA 89 283 283 ALA ALA A . n A 1 90 LEU 90 284 284 LEU LEU A . n A 1 91 GLU 91 285 285 GLU GLU A . n A 1 92 GLY 92 286 286 GLY GLY A . n A 1 93 LEU 93 287 287 LEU LEU A . n A 1 94 PRO 94 288 288 PRO PRO A . n A 1 95 TYR 95 289 289 TYR TYR A . n A 1 96 THR 96 290 290 THR THR A . n A 1 97 PRO 97 291 291 PRO PRO A . n A 1 98 PRO 98 292 292 PRO PRO A . n A 1 99 TYR 99 293 293 TYR TYR A . n A 1 100 PRO 100 294 294 PRO PRO A . n A 1 101 GLN 101 295 295 GLN GLN A . n A 1 102 ALA 102 296 296 ALA ALA A . n A 1 103 LEU 103 297 297 LEU LEU A . n A 1 104 GLU 104 298 298 GLU GLU A . n A 1 105 LYS 105 299 299 LYS LYS A . n A 1 106 GLY 106 300 300 GLY GLY A . n A 1 107 TYR 107 301 301 TYR TYR A . n A 1 108 PHE 108 302 302 PHE PHE A . n A 1 109 VAL 109 303 303 VAL VAL A . n A 1 110 VAL 110 304 304 VAL VAL A . n A 1 111 LEU 111 305 305 LEU LEU A . n A 1 112 ALA 112 306 306 ALA ALA A . n A 1 113 ASP 113 307 307 ASP ASP A . n A 1 114 TYR 114 308 308 TYR TYR A . n A 1 115 VAL 115 309 309 VAL VAL A . n A 1 116 SER 116 310 310 SER SER A . n A 1 117 GLN 117 311 311 GLN GLN A . n A 1 118 GLU 118 312 312 GLU GLU A . n A 1 119 ASP 119 313 313 ASP ASP A . n A 1 120 GLY 120 314 314 GLY GLY A . n A 1 121 THR 121 315 315 THR THR A . n A 1 122 GLY 122 316 316 GLY GLY A . n A 1 123 ILE 123 317 317 ILE ILE A . n A 1 124 VAL 124 318 318 VAL VAL A . n A 1 125 HIS 125 319 319 HIS HIS A . n A 1 126 GLN 126 320 320 GLN GLN A . n A 1 127 ALA 127 321 321 ALA ALA A . n A 1 128 PRO 128 322 322 PRO PRO A . n A 1 129 ALA 129 323 323 ALA ALA A . n A 1 130 PHE 130 324 324 PHE PHE A . n A 1 131 GLY 131 325 325 GLY GLY A . n A 1 132 ALA 132 326 326 ALA ALA A . n A 1 133 GLU 133 327 327 GLU GLU A . n A 1 134 ASP 134 328 328 ASP ASP A . n A 1 135 LEU 135 329 329 LEU LEU A . n A 1 136 GLU 136 330 330 GLU GLU A . n A 1 137 THR 137 331 331 THR THR A . n A 1 138 ALA 138 332 332 ALA ALA A . n A 1 139 ARG 139 333 333 ARG ARG A . n A 1 140 VAL 140 334 334 VAL VAL A . n A 1 141 TYR 141 335 335 TYR TYR A . n A 1 142 GLY 142 336 336 GLY GLY A . n A 1 143 LEU 143 337 337 LEU LEU A . n A 1 144 PRO 144 338 338 PRO PRO A . n A 1 145 LEU 145 339 339 LEU LEU A . n A 1 146 LEU 146 340 340 LEU LEU A . n A 1 147 LYS 147 341 341 LYS LYS A . n A 1 148 THR 148 342 342 THR THR A . n A 1 149 VAL 149 343 343 VAL VAL A . n A 1 150 ASP 150 344 344 ASP ASP A . n A 1 151 GLU 151 345 345 GLU GLU A . n A 1 152 GLU 152 346 346 GLU GLU A . n A 1 153 GLY 153 347 347 GLY GLY A . n A 1 154 LYS 154 348 348 LYS LYS A . n A 1 155 LEU 155 349 349 LEU LEU A . n A 1 156 LEU 156 350 350 LEU LEU A . n A 1 157 VAL 157 351 351 VAL VAL A . n A 1 158 GLU 158 352 352 GLU GLU A . n A 1 159 PRO 159 353 353 PRO PRO A . n A 1 160 PHE 160 354 354 PHE PHE A . n A 1 161 LYS 161 355 355 LYS LYS A . n A 1 162 GLY 162 356 356 GLY GLY A . n A 1 163 LEU 163 357 357 LEU LEU A . n A 1 164 TYR 164 358 358 TYR TYR A . n A 1 165 PHE 165 359 359 PHE PHE A . n A 1 166 ARG 166 360 360 ARG ARG A . n A 1 167 GLU 167 361 361 GLU GLU A . n A 1 168 ALA 168 362 362 ALA ALA A . n A 1 169 ASN 169 363 363 ASN ASN A . n A 1 170 ARG 170 364 364 ARG ARG A . n A 1 171 ALA 171 365 365 ALA ALA A . n A 1 172 ILE 172 366 366 ILE ILE A . n A 1 173 LEU 173 367 367 LEU LEU A . n A 1 174 ARG 174 368 368 ARG ARG A . n A 1 175 ASP 175 369 369 ASP ASP A . n A 1 176 LEU 176 370 370 LEU LEU A . n A 1 177 ARG 177 371 371 ARG ARG A . n A 1 178 GLY 178 372 372 GLY GLY A . n A 1 179 ARG 179 373 373 ARG ARG A . n A 1 180 GLY 180 374 374 GLY GLY A . n A 1 181 LEU 181 375 375 LEU LEU A . n A 1 182 LEU 182 376 376 LEU LEU A . n A 1 183 PHE 183 377 377 PHE PHE A . n A 1 184 LYS 184 378 378 LYS LYS A . n A 1 185 GLU 185 379 379 GLU GLU A . n A 1 186 GLU 186 380 380 GLU GLU A . n A 1 187 SER 187 381 381 SER SER A . n A 1 188 TYR 188 382 382 TYR TYR A . n A 1 189 LEU 189 383 ? ? ? A . n A 1 190 HIS 190 384 ? ? ? A . n A 1 191 SER 191 385 ? ? ? A . n A 1 192 TYR 192 386 ? ? ? A . n A 1 193 PRO 193 387 ? ? ? A . n A 1 194 HIS 194 388 ? ? ? A . n B 1 1 MET 1 195 ? ? ? B . n B 1 2 GLY 2 196 ? ? ? B . n B 1 3 TYR 3 197 ? ? ? B . n B 1 4 LYS 4 198 ? ? ? B . n B 1 5 GLU 5 199 ? ? ? B . n B 1 6 ILE 6 200 ? ? ? B . n B 1 7 GLN 7 201 ? ? ? B . n B 1 8 ASP 8 202 202 ASP ASP B . n B 1 9 PRO 9 203 203 PRO PRO B . n B 1 10 SER 10 204 204 SER SER B . n B 1 11 VAL 11 205 205 VAL VAL B . n B 1 12 TYR 12 206 206 TYR TYR B . n B 1 13 VAL 13 207 207 VAL VAL B . n B 1 14 ARG 14 208 208 ARG ARG B . n B 1 15 PHE 15 209 209 PHE PHE B . n B 1 16 PRO 16 210 210 PRO PRO B . n B 1 17 LEU 17 211 211 LEU LEU B . n B 1 18 LYS 18 212 212 LYS LYS B . n B 1 19 GLU 19 213 213 GLU GLU B . n B 1 20 PRO 20 214 214 PRO PRO B . n B 1 21 LYS 21 215 215 LYS LYS B . n B 1 22 LYS 22 216 216 LYS LYS B . n B 1 23 LEU 23 217 217 LEU LEU B . n B 1 24 GLY 24 218 218 GLY GLY B . n B 1 25 LEU 25 219 219 LEU LEU B . n B 1 26 GLU 26 220 220 GLU GLU B . n B 1 27 LYS 27 221 221 LYS LYS B . n B 1 28 ALA 28 222 222 ALA ALA B . n B 1 29 SER 29 223 223 SER SER B . n B 1 30 LEU 30 224 224 LEU LEU B . n B 1 31 LEU 31 225 225 LEU LEU B . n B 1 32 ILE 32 226 226 ILE ILE B . n B 1 33 TRP 33 227 227 TRP TRP B . n B 1 34 THR 34 228 228 THR THR B . n B 1 35 THR 35 229 229 THR THR B . n B 1 36 THR 36 230 230 THR THR B . n B 1 37 PRO 37 231 231 PRO PRO B . n B 1 38 TRP 38 232 232 TRP TRP B . n B 1 39 THR 39 233 233 THR THR B . n B 1 40 LEU 40 234 234 LEU LEU B . n B 1 41 PRO 41 235 235 PRO PRO B . n B 1 42 GLY 42 236 236 GLY GLY B . n B 1 43 ASN 43 237 237 ASN ASN B . n B 1 44 VAL 44 238 238 VAL VAL B . n B 1 45 ALA 45 239 239 ALA ALA B . n B 1 46 ALA 46 240 240 ALA ALA B . n B 1 47 ALA 47 241 241 ALA ALA B . n B 1 48 VAL 48 242 242 VAL VAL B . n B 1 49 HIS 49 243 243 HIS HIS B . n B 1 50 PRO 50 244 244 PRO PRO B . n B 1 51 GLU 51 245 245 GLU GLU B . n B 1 52 TYR 52 246 246 TYR TYR B . n B 1 53 THR 53 247 247 THR THR B . n B 1 54 TYR 54 248 248 TYR TYR B . n B 1 55 ALA 55 249 249 ALA ALA B . n B 1 56 ALA 56 250 250 ALA ALA B . n B 1 57 PHE 57 251 251 PHE PHE B . n B 1 58 GLN 58 252 252 GLN GLN B . n B 1 59 VAL 59 253 253 VAL VAL B . n B 1 60 GLY 60 254 254 GLY GLY B . n B 1 61 ASP 61 255 255 ASP ASP B . n B 1 62 GLU 62 256 256 GLU GLU B . n B 1 63 ALA 63 257 257 ALA ALA B . n B 1 64 LEU 64 258 258 LEU LEU B . n B 1 65 ILE 65 259 259 ILE ILE B . n B 1 66 LEU 66 260 260 LEU LEU B . n B 1 67 GLU 67 261 261 GLU GLU B . n B 1 68 GLU 68 262 262 GLU GLU B . n B 1 69 GLY 69 263 263 GLY GLY B . n B 1 70 LEU 70 264 264 LEU LEU B . n B 1 71 GLY 71 265 265 GLY GLY B . n B 1 72 ARG 72 266 266 ARG ARG B . n B 1 73 LYS 73 267 267 LYS LYS B . n B 1 74 LEU 74 268 268 LEU LEU B . n B 1 75 LEU 75 269 269 LEU LEU B . n B 1 76 GLY 76 270 270 GLY GLY B . n B 1 77 GLU 77 271 271 GLU GLU B . n B 1 78 GLY 78 272 272 GLY GLY B . n B 1 79 THR 79 273 273 THR THR B . n B 1 80 PRO 80 274 274 PRO PRO B . n B 1 81 VAL 81 275 275 VAL VAL B . n B 1 82 LEU 82 276 276 LEU LEU B . n B 1 83 LYS 83 277 277 LYS LYS B . n B 1 84 THR 84 278 278 THR THR B . n B 1 85 PHE 85 279 279 PHE PHE B . n B 1 86 PRO 86 280 280 PRO PRO B . n B 1 87 GLY 87 281 281 GLY GLY B . n B 1 88 LYS 88 282 282 LYS LYS B . n B 1 89 ALA 89 283 283 ALA ALA B . n B 1 90 LEU 90 284 284 LEU LEU B . n B 1 91 GLU 91 285 285 GLU GLU B . n B 1 92 GLY 92 286 286 GLY GLY B . n B 1 93 LEU 93 287 287 LEU LEU B . n B 1 94 PRO 94 288 288 PRO PRO B . n B 1 95 TYR 95 289 289 TYR TYR B . n B 1 96 THR 96 290 290 THR THR B . n B 1 97 PRO 97 291 291 PRO PRO B . n B 1 98 PRO 98 292 292 PRO PRO B . n B 1 99 TYR 99 293 293 TYR TYR B . n B 1 100 PRO 100 294 294 PRO PRO B . n B 1 101 GLN 101 295 295 GLN GLN B . n B 1 102 ALA 102 296 296 ALA ALA B . n B 1 103 LEU 103 297 297 LEU LEU B . n B 1 104 GLU 104 298 298 GLU GLU B . n B 1 105 LYS 105 299 299 LYS LYS B . n B 1 106 GLY 106 300 300 GLY GLY B . n B 1 107 TYR 107 301 301 TYR TYR B . n B 1 108 PHE 108 302 302 PHE PHE B . n B 1 109 VAL 109 303 303 VAL VAL B . n B 1 110 VAL 110 304 304 VAL VAL B . n B 1 111 LEU 111 305 305 LEU LEU B . n B 1 112 ALA 112 306 306 ALA ALA B . n B 1 113 ASP 113 307 307 ASP ASP B . n B 1 114 TYR 114 308 308 TYR TYR B . n B 1 115 VAL 115 309 309 VAL VAL B . n B 1 116 SER 116 310 310 SER SER B . n B 1 117 GLN 117 311 311 GLN GLN B . n B 1 118 GLU 118 312 312 GLU GLU B . n B 1 119 ASP 119 313 313 ASP ASP B . n B 1 120 GLY 120 314 314 GLY GLY B . n B 1 121 THR 121 315 315 THR THR B . n B 1 122 GLY 122 316 316 GLY GLY B . n B 1 123 ILE 123 317 317 ILE ILE B . n B 1 124 VAL 124 318 318 VAL VAL B . n B 1 125 HIS 125 319 319 HIS HIS B . n B 1 126 GLN 126 320 320 GLN GLN B . n B 1 127 ALA 127 321 321 ALA ALA B . n B 1 128 PRO 128 322 322 PRO PRO B . n B 1 129 ALA 129 323 323 ALA ALA B . n B 1 130 PHE 130 324 324 PHE PHE B . n B 1 131 GLY 131 325 325 GLY GLY B . n B 1 132 ALA 132 326 326 ALA ALA B . n B 1 133 GLU 133 327 327 GLU GLU B . n B 1 134 ASP 134 328 328 ASP ASP B . n B 1 135 LEU 135 329 329 LEU LEU B . n B 1 136 GLU 136 330 330 GLU GLU B . n B 1 137 THR 137 331 331 THR THR B . n B 1 138 ALA 138 332 332 ALA ALA B . n B 1 139 ARG 139 333 333 ARG ARG B . n B 1 140 VAL 140 334 334 VAL VAL B . n B 1 141 TYR 141 335 335 TYR TYR B . n B 1 142 GLY 142 336 336 GLY GLY B . n B 1 143 LEU 143 337 337 LEU LEU B . n B 1 144 PRO 144 338 338 PRO PRO B . n B 1 145 LEU 145 339 339 LEU LEU B . n B 1 146 LEU 146 340 340 LEU LEU B . n B 1 147 LYS 147 341 341 LYS LYS B . n B 1 148 THR 148 342 342 THR THR B . n B 1 149 VAL 149 343 343 VAL VAL B . n B 1 150 ASP 150 344 344 ASP ASP B . n B 1 151 GLU 151 345 345 GLU GLU B . n B 1 152 GLU 152 346 346 GLU GLU B . n B 1 153 GLY 153 347 347 GLY GLY B . n B 1 154 LYS 154 348 348 LYS LYS B . n B 1 155 LEU 155 349 349 LEU LEU B . n B 1 156 LEU 156 350 350 LEU LEU B . n B 1 157 VAL 157 351 351 VAL VAL B . n B 1 158 GLU 158 352 352 GLU GLU B . n B 1 159 PRO 159 353 353 PRO PRO B . n B 1 160 PHE 160 354 354 PHE PHE B . n B 1 161 LYS 161 355 355 LYS LYS B . n B 1 162 GLY 162 356 356 GLY GLY B . n B 1 163 LEU 163 357 357 LEU LEU B . n B 1 164 TYR 164 358 358 TYR TYR B . n B 1 165 PHE 165 359 359 PHE PHE B . n B 1 166 ARG 166 360 360 ARG ARG B . n B 1 167 GLU 167 361 361 GLU GLU B . n B 1 168 ALA 168 362 362 ALA ALA B . n B 1 169 ASN 169 363 363 ASN ASN B . n B 1 170 ARG 170 364 364 ARG ARG B . n B 1 171 ALA 171 365 365 ALA ALA B . n B 1 172 ILE 172 366 366 ILE ILE B . n B 1 173 LEU 173 367 367 LEU LEU B . n B 1 174 ARG 174 368 368 ARG ARG B . n B 1 175 ASP 175 369 369 ASP ASP B . n B 1 176 LEU 176 370 370 LEU LEU B . n B 1 177 ARG 177 371 371 ARG ARG B . n B 1 178 GLY 178 372 372 GLY GLY B . n B 1 179 ARG 179 373 373 ARG ARG B . n B 1 180 GLY 180 374 374 GLY GLY B . n B 1 181 LEU 181 375 375 LEU LEU B . n B 1 182 LEU 182 376 376 LEU LEU B . n B 1 183 PHE 183 377 377 PHE PHE B . n B 1 184 LYS 184 378 378 LYS LYS B . n B 1 185 GLU 185 379 379 GLU GLU B . n B 1 186 GLU 186 380 380 GLU GLU B . n B 1 187 SER 187 381 381 SER SER B . n B 1 188 TYR 188 382 382 TYR TYR B . n B 1 189 LEU 189 383 383 LEU LEU B . n B 1 190 HIS 190 384 384 HIS HIS B . n B 1 191 SER 191 385 385 SER SER B . n B 1 192 TYR 192 386 386 TYR TYR B . n B 1 193 PRO 193 387 387 PRO PRO B . n B 1 194 HIS 194 388 388 HIS HIS B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VMS 1 999 999 VMS VMS B . D 3 HOH 1 389 1 HOH TIP A . D 3 HOH 2 390 2 HOH TIP A . D 3 HOH 3 391 5 HOH TIP A . D 3 HOH 4 392 7 HOH TIP A . D 3 HOH 5 393 9 HOH TIP A . D 3 HOH 6 394 10 HOH TIP A . D 3 HOH 7 395 11 HOH TIP A . D 3 HOH 8 396 14 HOH TIP A . D 3 HOH 9 397 16 HOH TIP A . D 3 HOH 10 398 17 HOH TIP A . D 3 HOH 11 399 18 HOH TIP A . D 3 HOH 12 400 19 HOH TIP A . D 3 HOH 13 401 20 HOH TIP A . D 3 HOH 14 402 21 HOH TIP A . D 3 HOH 15 403 22 HOH TIP A . D 3 HOH 16 404 24 HOH TIP A . D 3 HOH 17 405 25 HOH TIP A . D 3 HOH 18 406 26 HOH TIP A . D 3 HOH 19 407 27 HOH TIP A . D 3 HOH 20 408 28 HOH TIP A . D 3 HOH 21 409 29 HOH TIP A . D 3 HOH 22 410 30 HOH TIP A . D 3 HOH 23 411 31 HOH TIP A . D 3 HOH 24 412 32 HOH TIP A . D 3 HOH 25 413 33 HOH TIP A . D 3 HOH 26 414 35 HOH TIP A . D 3 HOH 27 415 38 HOH TIP A . D 3 HOH 28 416 40 HOH TIP A . D 3 HOH 29 417 41 HOH TIP A . D 3 HOH 30 418 43 HOH TIP A . D 3 HOH 31 419 45 HOH TIP A . D 3 HOH 32 420 47 HOH TIP A . D 3 HOH 33 421 48 HOH TIP A . D 3 HOH 34 422 49 HOH TIP A . D 3 HOH 35 423 50 HOH TIP A . D 3 HOH 36 424 51 HOH TIP A . D 3 HOH 37 425 53 HOH TIP A . D 3 HOH 38 426 54 HOH TIP A . D 3 HOH 39 427 55 HOH TIP A . D 3 HOH 40 428 56 HOH TIP A . D 3 HOH 41 429 58 HOH TIP A . D 3 HOH 42 430 59 HOH TIP A . D 3 HOH 43 431 60 HOH TIP A . D 3 HOH 44 432 61 HOH TIP A . D 3 HOH 45 433 62 HOH TIP A . D 3 HOH 46 434 64 HOH TIP A . D 3 HOH 47 435 65 HOH TIP A . D 3 HOH 48 436 67 HOH TIP A . D 3 HOH 49 437 70 HOH TIP A . D 3 HOH 50 438 72 HOH TIP A . D 3 HOH 51 439 73 HOH TIP A . D 3 HOH 52 440 74 HOH TIP A . D 3 HOH 53 441 76 HOH TIP A . D 3 HOH 54 442 77 HOH TIP A . D 3 HOH 55 443 79 HOH TIP A . D 3 HOH 56 444 80 HOH TIP A . D 3 HOH 57 445 81 HOH TIP A . D 3 HOH 58 446 82 HOH TIP A . D 3 HOH 59 447 86 HOH TIP A . D 3 HOH 60 448 87 HOH TIP A . D 3 HOH 61 449 88 HOH TIP A . D 3 HOH 62 450 91 HOH TIP A . D 3 HOH 63 451 92 HOH TIP A . D 3 HOH 64 452 94 HOH TIP A . D 3 HOH 65 453 96 HOH TIP A . D 3 HOH 66 454 97 HOH TIP A . D 3 HOH 67 455 98 HOH TIP A . D 3 HOH 68 456 100 HOH TIP A . D 3 HOH 69 457 101 HOH TIP A . D 3 HOH 70 458 102 HOH TIP A . D 3 HOH 71 459 103 HOH TIP A . D 3 HOH 72 460 104 HOH TIP A . D 3 HOH 73 461 106 HOH TIP A . D 3 HOH 74 462 108 HOH TIP A . D 3 HOH 75 463 111 HOH TIP A . D 3 HOH 76 464 112 HOH TIP A . D 3 HOH 77 465 114 HOH TIP A . D 3 HOH 78 466 116 HOH TIP A . D 3 HOH 79 467 117 HOH TIP A . D 3 HOH 80 468 118 HOH TIP A . D 3 HOH 81 469 120 HOH TIP A . D 3 HOH 82 470 121 HOH TIP A . D 3 HOH 83 471 123 HOH TIP A . D 3 HOH 84 472 124 HOH TIP A . D 3 HOH 85 473 127 HOH TIP A . D 3 HOH 86 474 129 HOH TIP A . D 3 HOH 87 475 131 HOH TIP A . D 3 HOH 88 476 132 HOH TIP A . D 3 HOH 89 477 135 HOH TIP A . D 3 HOH 90 478 136 HOH TIP A . D 3 HOH 91 479 138 HOH TIP A . D 3 HOH 92 480 140 HOH TIP A . D 3 HOH 93 481 141 HOH TIP A . D 3 HOH 94 482 143 HOH TIP A . D 3 HOH 95 483 144 HOH TIP A . D 3 HOH 96 484 145 HOH TIP A . D 3 HOH 97 485 146 HOH TIP A . D 3 HOH 98 486 149 HOH TIP A . D 3 HOH 99 487 150 HOH TIP A . D 3 HOH 100 488 152 HOH TIP A . D 3 HOH 101 489 156 HOH TIP A . D 3 HOH 102 490 158 HOH TIP A . D 3 HOH 103 491 159 HOH TIP A . D 3 HOH 104 492 162 HOH TIP A . D 3 HOH 105 493 164 HOH TIP A . D 3 HOH 106 494 165 HOH TIP A . D 3 HOH 107 495 169 HOH TIP A . D 3 HOH 108 496 172 HOH TIP A . D 3 HOH 109 497 174 HOH TIP A . D 3 HOH 110 498 177 HOH TIP A . D 3 HOH 111 499 180 HOH TIP A . D 3 HOH 112 500 185 HOH TIP A . D 3 HOH 113 501 188 HOH TIP A . D 3 HOH 114 502 189 HOH TIP A . D 3 HOH 115 503 195 HOH TIP A . D 3 HOH 116 504 197 HOH TIP A . D 3 HOH 117 505 200 HOH TIP A . D 3 HOH 118 506 201 HOH TIP A . D 3 HOH 119 507 202 HOH TIP A . D 3 HOH 120 508 203 HOH TIP A . D 3 HOH 121 509 204 HOH TIP A . D 3 HOH 122 510 206 HOH TIP A . D 3 HOH 123 511 207 HOH TIP A . D 3 HOH 124 512 210 HOH TIP A . D 3 HOH 125 513 213 HOH TIP A . D 3 HOH 126 514 214 HOH TIP A . D 3 HOH 127 515 215 HOH TIP A . D 3 HOH 128 516 216 HOH TIP A . D 3 HOH 129 517 217 HOH TIP A . D 3 HOH 130 518 218 HOH TIP A . D 3 HOH 131 519 221 HOH TIP A . D 3 HOH 132 520 224 HOH TIP A . D 3 HOH 133 521 227 HOH TIP A . D 3 HOH 134 522 229 HOH TIP A . D 3 HOH 135 523 234 HOH TIP A . D 3 HOH 136 524 235 HOH TIP A . D 3 HOH 137 525 237 HOH TIP A . D 3 HOH 138 526 239 HOH TIP A . D 3 HOH 139 527 240 HOH TIP A . D 3 HOH 140 528 242 HOH TIP A . D 3 HOH 141 529 243 HOH TIP A . D 3 HOH 142 530 244 HOH TIP A . D 3 HOH 143 531 245 HOH TIP A . D 3 HOH 144 532 246 HOH TIP A . D 3 HOH 145 533 248 HOH TIP A . D 3 HOH 146 534 249 HOH TIP A . D 3 HOH 147 535 250 HOH TIP A . D 3 HOH 148 536 251 HOH TIP A . D 3 HOH 149 537 252 HOH TIP A . D 3 HOH 150 538 253 HOH TIP A . D 3 HOH 151 539 254 HOH TIP A . D 3 HOH 152 540 256 HOH TIP A . D 3 HOH 153 541 257 HOH TIP A . D 3 HOH 154 542 258 HOH TIP A . D 3 HOH 155 543 259 HOH TIP A . D 3 HOH 156 544 261 HOH TIP A . D 3 HOH 157 545 262 HOH TIP A . D 3 HOH 158 546 263 HOH TIP A . D 3 HOH 159 547 264 HOH TIP A . D 3 HOH 160 548 265 HOH TIP A . D 3 HOH 161 549 266 HOH TIP A . D 3 HOH 162 550 268 HOH TIP A . D 3 HOH 163 551 269 HOH TIP A . D 3 HOH 164 552 270 HOH TIP A . D 3 HOH 165 553 271 HOH TIP A . D 3 HOH 166 554 272 HOH TIP A . D 3 HOH 167 555 273 HOH TIP A . D 3 HOH 168 556 274 HOH TIP A . E 3 HOH 1 1000 3 HOH TIP B . E 3 HOH 2 1001 4 HOH TIP B . E 3 HOH 3 1002 6 HOH TIP B . E 3 HOH 4 1003 8 HOH TIP B . E 3 HOH 5 1004 12 HOH TIP B . E 3 HOH 6 1005 13 HOH TIP B . E 3 HOH 7 1006 15 HOH TIP B . E 3 HOH 8 1007 23 HOH TIP B . E 3 HOH 9 1008 34 HOH TIP B . E 3 HOH 10 1009 36 HOH TIP B . E 3 HOH 11 1010 37 HOH TIP B . E 3 HOH 12 1011 39 HOH TIP B . E 3 HOH 13 1012 42 HOH TIP B . E 3 HOH 14 1013 44 HOH TIP B . E 3 HOH 15 1014 46 HOH TIP B . E 3 HOH 16 1015 52 HOH TIP B . E 3 HOH 17 1016 57 HOH TIP B . E 3 HOH 18 1017 63 HOH TIP B . E 3 HOH 19 1018 66 HOH TIP B . E 3 HOH 20 1019 68 HOH TIP B . E 3 HOH 21 1020 69 HOH TIP B . E 3 HOH 22 1021 71 HOH TIP B . E 3 HOH 23 1022 75 HOH TIP B . E 3 HOH 24 1023 78 HOH TIP B . E 3 HOH 25 1024 83 HOH TIP B . E 3 HOH 26 1025 84 HOH TIP B . E 3 HOH 27 1026 85 HOH TIP B . E 3 HOH 28 1027 89 HOH TIP B . E 3 HOH 29 1028 90 HOH TIP B . E 3 HOH 30 1029 93 HOH TIP B . E 3 HOH 31 1030 95 HOH TIP B . E 3 HOH 32 1031 99 HOH TIP B . E 3 HOH 33 1032 105 HOH TIP B . E 3 HOH 34 1033 107 HOH TIP B . E 3 HOH 35 1034 109 HOH TIP B . E 3 HOH 36 1035 110 HOH TIP B . E 3 HOH 37 1036 113 HOH TIP B . E 3 HOH 38 1037 115 HOH TIP B . E 3 HOH 39 1038 119 HOH TIP B . E 3 HOH 40 1039 122 HOH TIP B . E 3 HOH 41 1040 125 HOH TIP B . E 3 HOH 42 1041 126 HOH TIP B . E 3 HOH 43 1042 128 HOH TIP B . E 3 HOH 44 1043 130 HOH TIP B . E 3 HOH 45 1044 133 HOH TIP B . E 3 HOH 46 1045 134 HOH TIP B . E 3 HOH 47 1046 137 HOH TIP B . E 3 HOH 48 1047 139 HOH TIP B . E 3 HOH 49 1048 142 HOH TIP B . E 3 HOH 50 1049 147 HOH TIP B . E 3 HOH 51 1050 148 HOH TIP B . E 3 HOH 52 1051 151 HOH TIP B . E 3 HOH 53 1052 153 HOH TIP B . E 3 HOH 54 1053 154 HOH TIP B . E 3 HOH 55 1054 155 HOH TIP B . E 3 HOH 56 1055 157 HOH TIP B . E 3 HOH 57 1056 160 HOH TIP B . E 3 HOH 58 1057 161 HOH TIP B . E 3 HOH 59 1058 163 HOH TIP B . E 3 HOH 60 1059 166 HOH TIP B . E 3 HOH 61 1060 167 HOH TIP B . E 3 HOH 62 1061 168 HOH TIP B . E 3 HOH 63 1062 170 HOH TIP B . E 3 HOH 64 1063 171 HOH TIP B . E 3 HOH 65 1064 173 HOH TIP B . E 3 HOH 66 1065 175 HOH TIP B . E 3 HOH 67 1066 176 HOH TIP B . E 3 HOH 68 1067 178 HOH TIP B . E 3 HOH 69 1068 179 HOH TIP B . E 3 HOH 70 1069 181 HOH TIP B . E 3 HOH 71 1070 182 HOH TIP B . E 3 HOH 72 1071 183 HOH TIP B . E 3 HOH 73 1072 184 HOH TIP B . E 3 HOH 74 1073 186 HOH TIP B . E 3 HOH 75 1074 187 HOH TIP B . E 3 HOH 76 1075 190 HOH TIP B . E 3 HOH 77 1076 191 HOH TIP B . E 3 HOH 78 1077 192 HOH TIP B . E 3 HOH 79 1078 193 HOH TIP B . E 3 HOH 80 1079 194 HOH TIP B . E 3 HOH 81 1080 196 HOH TIP B . E 3 HOH 82 1081 198 HOH TIP B . E 3 HOH 83 1082 199 HOH TIP B . E 3 HOH 84 1083 205 HOH TIP B . E 3 HOH 85 1084 208 HOH TIP B . E 3 HOH 86 1085 209 HOH TIP B . E 3 HOH 87 1086 211 HOH TIP B . E 3 HOH 88 1087 212 HOH TIP B . E 3 HOH 89 1088 219 HOH TIP B . E 3 HOH 90 1089 220 HOH TIP B . E 3 HOH 91 1090 222 HOH TIP B . E 3 HOH 92 1091 223 HOH TIP B . E 3 HOH 93 1092 225 HOH TIP B . E 3 HOH 94 1093 226 HOH TIP B . E 3 HOH 95 1094 228 HOH TIP B . E 3 HOH 96 1095 230 HOH TIP B . E 3 HOH 97 1096 231 HOH TIP B . E 3 HOH 98 1097 232 HOH TIP B . E 3 HOH 99 1098 233 HOH TIP B . E 3 HOH 100 1099 236 HOH TIP B . E 3 HOH 101 1100 238 HOH TIP B . E 3 HOH 102 1101 241 HOH TIP B . E 3 HOH 103 1102 247 HOH TIP B . E 3 HOH 104 1103 255 HOH TIP B . E 3 HOH 105 1104 260 HOH TIP B . E 3 HOH 106 1105 267 HOH TIP B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 2 1 B,C,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1066 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-27 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 444 ? ? O A HOH 502 ? ? 2.14 2 1 OG1 B THR 228 ? ? OAZ B VMS 999 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 555 ? ? 1_555 O A HOH 555 ? ? 7_645 1.86 2 1 O A HOH 421 ? ? 1_555 O A HOH 467 ? ? 4_564 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 371 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 371 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 371 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 115.94 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -4.36 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 202 ? ? -36.25 128.27 2 1 GLU B 213 ? ? -153.86 73.85 3 1 LYS B 216 ? ? -55.30 3.36 4 1 GLU B 220 ? ? -101.30 -64.79 5 1 LEU B 340 ? ? 49.22 81.02 6 1 PRO B 353 ? ? -97.80 33.79 7 1 LEU B 383 ? ? -62.37 -128.36 8 1 HIS B 384 ? ? 71.00 -29.35 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 195 ? A MET 1 2 1 Y 1 A GLY 196 ? A GLY 2 3 1 Y 1 A TYR 197 ? A TYR 3 4 1 Y 1 A LYS 198 ? A LYS 4 5 1 Y 1 A GLU 199 ? A GLU 5 6 1 Y 1 A ILE 200 ? A ILE 6 7 1 Y 1 A LEU 383 ? A LEU 189 8 1 Y 1 A HIS 384 ? A HIS 190 9 1 Y 1 A SER 385 ? A SER 191 10 1 Y 1 A TYR 386 ? A TYR 192 11 1 Y 1 A PRO 387 ? A PRO 193 12 1 Y 1 A HIS 388 ? A HIS 194 13 1 Y 1 B MET 195 ? B MET 1 14 1 Y 1 B GLY 196 ? B GLY 2 15 1 Y 1 B TYR 197 ? B TYR 3 16 1 Y 1 B LYS 198 ? B LYS 4 17 1 Y 1 B GLU 199 ? B GLU 5 18 1 Y 1 B ILE 200 ? B ILE 6 19 1 Y 1 B GLN 201 ? B GLN 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 VMS CG2 C N N 377 VMS CB C N N 378 VMS CG1 C N N 379 VMS CA C N S 380 VMS N N N N 381 VMS C C N N 382 VMS O O N N 383 VMS NAS N N N 384 VMS SBD S N N 385 VMS OAZ O N N 386 VMS OBC O N N 387 VMS "O5'" O N N 388 VMS "C5'" C N N 389 VMS "C4'" C N R 390 VMS "O4'" O N N 391 VMS "C3'" C N S 392 VMS "O3'" O N N 393 VMS "C2'" C N R 394 VMS "O2'" O N N 395 VMS "C1'" C N R 396 VMS N9 N Y N 397 VMS C8 C Y N 398 VMS N7 N Y N 399 VMS C5 C Y N 400 VMS C4 C Y N 401 VMS N3 N Y N 402 VMS C2 C Y N 403 VMS N1 N Y N 404 VMS C6 C Y N 405 VMS N6 N N N 406 VMS HG21 H N N 407 VMS HG22 H N N 408 VMS HG23 H N N 409 VMS HB H N N 410 VMS HG11 H N N 411 VMS HG12 H N N 412 VMS HG13 H N N 413 VMS HA H N N 414 VMS H H N N 415 VMS H2 H N N 416 VMS HAS H N N 417 VMS "H5'1" H N N 418 VMS "H5'2" H N N 419 VMS "H4'" H N N 420 VMS "H3'" H N N 421 VMS "HO3'" H N N 422 VMS H1 H N N 423 VMS "H2'" H N N 424 VMS "H1'" H N N 425 VMS H8 H N N 426 VMS H3 H N N 427 VMS HN61 H N N 428 VMS HN62 H N N 429 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 VMS CG2 CB sing N N 363 VMS CG2 HG21 sing N N 364 VMS CG2 HG22 sing N N 365 VMS CG2 HG23 sing N N 366 VMS CB CG1 sing N N 367 VMS CB CA sing N N 368 VMS CB HB sing N N 369 VMS CG1 HG11 sing N N 370 VMS CG1 HG12 sing N N 371 VMS CG1 HG13 sing N N 372 VMS CA N sing N N 373 VMS CA C sing N N 374 VMS CA HA sing N N 375 VMS N H sing N N 376 VMS N H2 sing N N 377 VMS C O doub N N 378 VMS C NAS sing N N 379 VMS NAS SBD sing N N 380 VMS NAS HAS sing N N 381 VMS SBD OAZ doub N N 382 VMS SBD OBC doub N N 383 VMS SBD "O5'" sing N N 384 VMS "O5'" "C5'" sing N N 385 VMS "C5'" "C4'" sing N N 386 VMS "C5'" "H5'1" sing N N 387 VMS "C5'" "H5'2" sing N N 388 VMS "C4'" "O4'" sing N N 389 VMS "C4'" "C3'" sing N N 390 VMS "C4'" "H4'" sing N N 391 VMS "O4'" "C1'" sing N N 392 VMS "C3'" "O3'" sing N N 393 VMS "C3'" "C2'" sing N N 394 VMS "C3'" "H3'" sing N N 395 VMS "O3'" "HO3'" sing N N 396 VMS "C2'" "O2'" sing N N 397 VMS "C2'" "C1'" sing N N 398 VMS "C2'" H1 sing N N 399 VMS "O2'" "H2'" sing N N 400 VMS "C1'" N9 sing N N 401 VMS "C1'" "H1'" sing N N 402 VMS N9 C8 sing Y N 403 VMS N9 C4 sing Y N 404 VMS C8 N7 doub Y N 405 VMS C8 H8 sing N N 406 VMS N7 C5 sing Y N 407 VMS C5 C4 doub Y N 408 VMS C5 C6 sing Y N 409 VMS C4 N3 sing Y N 410 VMS N3 C2 doub Y N 411 VMS C2 N1 sing Y N 412 VMS C2 H3 sing N N 413 VMS N1 C6 doub Y N 414 VMS C6 N6 sing N N 415 VMS N6 HN61 sing N N 416 VMS N6 HN62 sing N N 417 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE" VMS 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1UDZ _pdbx_initial_refinement_model.details ? #