HEADER LIGASE 30-MAY-04 1WKB TITLE CRYSTAL STRUCTURE OF LEUCYL-TRNA SYNTHETASE FROM THE ARCHAEON TITLE 2 PYROCOCCUS HORIKOSHII REVEALS A NOVEL EDITING DOMAIN ORIENTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUE 1-810; COMPND 5 SYNONYM: LEUCINE--TRNA LIGASE, LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS LEUCYL-TRNA SYNTHETASE, LEUCINE, AMINOACYL-TRNA, EDITING, AMINO ACID, KEYWDS 2 AMINOACYLATION, PYROCOCCUS HORIKOSHII, TRNALEU, STRUCTURAL GENOMICS, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.FUKUNAGA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 2 (RSGI) REVDAT 3 13-MAR-24 1WKB 1 REMARK REVDAT 2 24-FEB-09 1WKB 1 VERSN REVDAT 1 08-FEB-05 1WKB 0 JRNL AUTH R.FUKUNAGA,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF LEUCYL-TRNA SYNTHETASE FROM THE JRNL TITL 2 ARCHAEON PYROCOCCUS HORIKOSHII REVEALS A NOVEL EDITING JRNL TITL 3 DOMAIN ORIENTATION JRNL REF J.MOL.BIOL. V. 346 57 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15663927 JRNL DOI 10.1016/J.JMB.2004.11.060 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3296585.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 73341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3752 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10952 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 591 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 825 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : 1.71000 REMARK 3 B12 (A**2) : 1.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.020 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.970 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.630 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.090 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 74.66 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000023671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790, 0.9793, 0.9830, 0.9760 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73341 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM ADA(6.7), 1.9M AMMONIUM SULPHATE, REMARK 280 5% PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH REMARK 280 6.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 93.09800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.75016 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.47600 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 93.09800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 53.75016 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.47600 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 93.09800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 53.75016 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.47600 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 107.50031 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 60.95200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 107.50031 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 60.95200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 107.50031 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.95200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 357 REMARK 465 ASN A 358 REMARK 465 ILE A 359 REMARK 465 THR A 360 REMARK 465 TYR A 361 REMARK 465 ILE A 362 REMARK 465 SER A 363 REMARK 465 LEU A 364 REMARK 465 ILE A 365 REMARK 465 LYS A 366 REMARK 465 LEU A 367 REMARK 465 GLU A 368 REMARK 465 GLY A 369 REMARK 465 TYR A 370 REMARK 465 GLY A 371 REMARK 465 ASP A 372 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1016 O HOH A 1559 2.05 REMARK 500 O HOH A 1066 O HOH A 1549 2.10 REMARK 500 O HOH A 1149 O HOH A 1357 2.10 REMARK 500 O HOH A 1139 O HOH A 1169 2.12 REMARK 500 O HOH A 1113 O HOH A 1135 2.13 REMARK 500 OE2 GLU A 490 O HOH A 1677 2.13 REMARK 500 O SER A 301 N ASP A 303 2.14 REMARK 500 O HOH A 1083 O HOH A 1419 2.15 REMARK 500 O HOH A 1209 O HOH A 1558 2.18 REMARK 500 O HOH A 1116 O HOH A 1135 2.19 REMARK 500 O HOH A 1083 O HOH A 1160 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 153 175.19 72.40 REMARK 500 GLU A 218 97.13 -167.68 REMARK 500 ASN A 219 -17.55 53.11 REMARK 500 LYS A 257 -91.06 66.26 REMARK 500 GLN A 276 63.48 -108.80 REMARK 500 GLU A 284 151.70 177.85 REMARK 500 LYS A 287 -148.86 45.56 REMARK 500 PRO A 299 -4.55 -57.72 REMARK 500 ALA A 310 108.51 -173.97 REMARK 500 ALA A 318 -132.80 53.60 REMARK 500 LEU A 339 38.73 175.43 REMARK 500 GLU A 342 -126.76 41.51 REMARK 500 GLU A 347 -178.98 -51.95 REMARK 500 LYS A 348 -12.31 65.26 REMARK 500 ASP A 350 115.99 65.17 REMARK 500 ILE A 355 21.63 -141.12 REMARK 500 GLU A 377 75.51 -42.36 REMARK 500 LYS A 381 6.85 -62.48 REMARK 500 LEU A 382 11.68 -146.39 REMARK 500 ILE A 384 15.59 -148.21 REMARK 500 LYS A 385 -175.63 75.64 REMARK 500 SER A 386 -125.85 -158.36 REMARK 500 GLN A 387 113.08 100.40 REMARK 500 LYS A 388 -50.11 -4.75 REMARK 500 GLU A 391 -174.70 58.91 REMARK 500 LYS A 392 1.94 59.20 REMARK 500 HIS A 406 -84.85 -55.27 REMARK 500 LYS A 407 -124.48 -85.10 REMARK 500 VAL A 412 143.16 -32.44 REMARK 500 LYS A 434 -22.62 -172.80 REMARK 500 ASN A 447 45.83 -99.67 REMARK 500 ASP A 521 67.66 -158.33 REMARK 500 PRO A 522 -15.74 -45.53 REMARK 500 ASN A 616 -98.55 -124.17 REMARK 500 HIS A 683 -143.39 56.36 REMARK 500 LYS A 717 -131.19 -86.90 REMARK 500 PHE A 757 -65.21 -104.65 REMARK 500 ASP A 775 95.70 -160.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 105 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 908 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001000965.1 RELATED DB: TARGETDB DBREF 1WKB A 1 810 UNP O58698 SYL_PYRHO 1 810 SEQRES 1 A 810 MET ALA GLU LEU ASN PHE LYS ALA ILE GLU GLU LYS TRP SEQRES 2 A 810 GLN LYS ARG TRP LEU GLU ALA LYS ILE PHE GLU PRO ASN SEQRES 3 A 810 ILE ARG ASP LYS PRO LYS GLU LYS LYS PHE TYR ILE THR SEQRES 4 A 810 VAL ALA PHE PRO TYR LEU SER GLY HIS LEU HIS VAL GLY SEQRES 5 A 810 HIS ALA ARG THR TYR THR ILE PRO ASP VAL ILE ALA ARG SEQRES 6 A 810 PHE LYS ARG MET GLN GLY TYR ASN VAL LEU PHE PRO MET SEQRES 7 A 810 ALA TRP HIS ILE THR GLY SER PRO ILE VAL GLY ILE ALA SEQRES 8 A 810 GLU ARG ILE LYS ASN ARG ASP PRO LYS THR ILE TRP ILE SEQRES 9 A 810 TYR ARG ASP VAL TYR LYS VAL PRO GLU GLU ILE LEU TRP SEQRES 10 A 810 THR PHE GLU ASP PRO ILE ASN ILE VAL LYS TYR PHE MET SEQRES 11 A 810 LYS ALA ALA LYS GLU THR PHE ILE ARG ALA GLY PHE SER SEQRES 12 A 810 VAL ASP TRP SER ARG GLU PHE TYR THR THR SER LEU PHE SEQRES 13 A 810 PRO PRO PHE SER LYS PHE ILE GLU TRP GLN PHE TRP LYS SEQRES 14 A 810 LEU LYS GLU LYS GLY TYR ILE VAL LYS GLY ALA HIS ARG SEQRES 15 A 810 VAL ARG TRP ASP PRO VAL VAL GLY THR PRO LEU GLY ASP SEQRES 16 A 810 HIS ASP LEU MET GLU GLY GLU ASP VAL PRO ILE LEU ASP SEQRES 17 A 810 TYR ILE ILE ILE LYS PHE GLU LEU ARG GLU ASN GLY GLU SEQRES 18 A 810 VAL ILE TYR LEU PRO ALA ALA THR LEU ARG PRO GLU THR SEQRES 19 A 810 VAL TYR GLY VAL THR ASN MET TRP VAL ASN PRO ASN ALA SEQRES 20 A 810 THR TYR VAL LYS ALA LYS VAL ARG ARG LYS ASP LYS GLU SEQRES 21 A 810 GLU THR TRP ILE VAL SER LYS GLU ALA ALA TYR LYS LEU SEQRES 22 A 810 SER PHE GLN ASP ARG GLU ILE GLU VAL ILE GLU GLU PHE SEQRES 23 A 810 LYS GLY GLU LYS LEU ILE GLY LYS TYR VAL ARG ASN PRO SEQRES 24 A 810 VAL SER GLY ASP GLU VAL ILE ILE LEU PRO ALA GLU PHE SEQRES 25 A 810 VAL ASP PRO ASP ASN ALA THR GLY VAL VAL MET SER VAL SEQRES 26 A 810 PRO ALA HIS ALA PRO PHE ASP HIS VAL ALA LEU GLU ASP SEQRES 27 A 810 LEU LYS ARG GLU THR GLU ILE LEU GLU LYS TYR ASP ILE SEQRES 28 A 810 ASP PRO ARG ILE VAL GLU ASN ILE THR TYR ILE SER LEU SEQRES 29 A 810 ILE LYS LEU GLU GLY TYR GLY ASP PHE PRO ALA VAL GLU SEQRES 30 A 810 GLU VAL ASN LYS LEU GLY ILE LYS SER GLN LYS ASP LYS SEQRES 31 A 810 GLU LYS LEU GLU GLN ALA THR LYS THR ILE TYR LYS ALA SEQRES 32 A 810 GLU TYR HIS LYS GLY ILE PHE LYS VAL PRO PRO TYR GLU SEQRES 33 A 810 GLY LYS PRO VAL GLN GLU VAL LYS GLU ALA ILE ALA LYS SEQRES 34 A 810 GLU MET LEU GLU LYS GLY ILE ALA GLU ILE MET TYR GLU SEQRES 35 A 810 PHE ALA GLU LYS ASN VAL ILE SER ARG PHE GLY ASN ARG SEQRES 36 A 810 ALA VAL ILE LYS ILE ILE HIS ASP GLN TRP PHE ILE ASP SEQRES 37 A 810 TYR GLY ASN PRO GLU TRP LYS GLU LYS ALA ARG LYS ALA SEQRES 38 A 810 LEU GLU ARG MET LYS ILE LEU PRO GLU THR ARG ARG ALA SEQRES 39 A 810 GLN PHE GLU ALA ILE ILE ASP TRP LEU ASP LYS LYS ALA SEQRES 40 A 810 CYS ALA ARG LYS ILE GLY LEU GLY THR PRO LEU PRO TRP SEQRES 41 A 810 ASP PRO GLU TRP VAL ILE GLU SER LEU SER ASP SER THR SEQRES 42 A 810 ILE TYR MET ALA TYR TYR THR ILE SER ARG HIS ILE ASN SEQRES 43 A 810 LYS LEU ARG GLN GLU GLY LYS LEU ASP PRO GLU LYS LEU SEQRES 44 A 810 THR PRO GLU PHE PHE ASP TYR ILE PHE LEU GLU GLU PHE SEQRES 45 A 810 SER GLU ASP LYS GLU LYS GLU LEU GLU LYS LYS THR GLY SEQRES 46 A 810 ILE PRO ALA GLU ILE ILE HIS GLU MET LYS GLU GLU PHE SEQRES 47 A 810 GLU TYR TRP TYR PRO LEU ASP TRP ARG CYS SER GLY LYS SEQRES 48 A 810 ASP LEU ILE PRO ASN HIS LEU THR PHE PHE ILE PHE ASN SEQRES 49 A 810 HIS VAL ALA ILE PHE ARG GLU GLU HIS TRP PRO LYS GLY SEQRES 50 A 810 ILE ALA VAL ASN GLY PHE GLY THR LEU GLU GLY GLN LYS SEQRES 51 A 810 MET SER LYS SER LYS GLY ASN VAL LEU ASN PHE ILE ASP SEQRES 52 A 810 ALA ILE GLU GLU ASN GLY ALA ASP VAL VAL ARG LEU TYR SEQRES 53 A 810 ILE MET SER LEU ALA GLU HIS ASP SER ASP PHE ASP TRP SEQRES 54 A 810 ARG ARG LYS GLU VAL GLY LYS LEU ARG LYS GLN ILE GLU SEQRES 55 A 810 ARG PHE TYR GLU LEU ILE SER GLN PHE ALA GLU TYR GLU SEQRES 56 A 810 VAL LYS GLY ASN VAL GLU LEU LYS ASP ILE ASP ARG TRP SEQRES 57 A 810 MET LEU HIS ARG LEU ASN LYS ALA ILE LYS GLU THR THR SEQRES 58 A 810 ASN ALA LEU GLU GLU PHE ARG THR ARG THR ALA VAL GLN SEQRES 59 A 810 TRP ALA PHE TYR SER ILE MET ASN ASP LEU ARG TRP TYR SEQRES 60 A 810 LEU ARG ARG THR GLU GLY ARG ASP ASP GLU ALA LYS ARG SEQRES 61 A 810 TYR VAL LEU ARG THR LEU ALA ASP VAL TRP VAL ARG LEU SEQRES 62 A 810 MET ALA PRO PHE THR PRO HIS ILE CYS GLU GLU LEU TRP SEQRES 63 A 810 GLU LYS LEU GLY HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HET SO4 A 905 5 HET SO4 A 906 5 HET SO4 A 907 5 HET SO4 A 908 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 8(O4 S 2-) FORMUL 10 HOH *825(H2 O) HELIX 1 1 PHE A 6 ALA A 20 1 15 HELIX 2 2 ASN A 26 LYS A 30 5 5 HELIX 3 3 PRO A 31 GLU A 33 5 3 HELIX 4 4 HIS A 50 GLY A 71 1 22 HELIX 5 5 SER A 85 ASN A 96 1 12 HELIX 6 6 ASP A 98 VAL A 108 1 11 HELIX 7 7 PRO A 112 THR A 118 1 7 HELIX 8 8 ASP A 121 ALA A 140 1 20 HELIX 9 9 ASP A 145 GLU A 149 5 5 HELIX 10 10 PHE A 156 LYS A 173 1 18 HELIX 11 11 ARG A 231 VAL A 238 5 8 HELIX 12 12 LYS A 267 SER A 274 1 8 HELIX 13 13 ALA A 329 GLU A 337 1 9 HELIX 14 14 VAL A 379 GLY A 383 5 5 HELIX 15 15 LEU A 393 LYS A 407 1 15 HELIX 16 16 VAL A 412 GLU A 416 5 5 HELIX 17 17 VAL A 420 GLU A 433 1 14 HELIX 18 18 ASN A 471 ARG A 484 1 14 HELIX 19 19 PRO A 489 THR A 491 5 3 HELIX 20 20 ARG A 492 LEU A 503 1 12 HELIX 21 21 ILE A 534 GLU A 551 1 18 HELIX 22 22 ASP A 555 LEU A 559 5 5 HELIX 23 23 THR A 560 GLU A 570 1 11 HELIX 24 24 SER A 573 GLY A 585 1 13 HELIX 25 25 PRO A 587 TYR A 602 1 16 HELIX 26 26 ASP A 612 ILE A 614 5 3 HELIX 27 27 ASN A 616 PHE A 629 1 14 HELIX 28 28 ARG A 630 TRP A 634 5 5 HELIX 29 29 ASN A 660 GLY A 669 1 10 HELIX 30 30 GLY A 669 ALA A 681 1 13 HELIX 31 31 ARG A 690 GLU A 713 1 24 HELIX 32 32 LYS A 723 GLU A 746 1 24 HELIX 33 33 ARG A 748 PHE A 757 1 10 HELIX 34 34 PHE A 757 THR A 771 1 15 HELIX 35 35 ASP A 776 ALA A 795 1 20 HELIX 36 36 THR A 798 LEU A 809 1 12 SHEET 1 A 5 ASN A 73 LEU A 75 0 SHEET 2 A 5 LYS A 35 VAL A 40 1 N PHE A 36 O LEU A 75 SHEET 3 A 5 TRP A 606 GLY A 610 1 O TRP A 606 N THR A 39 SHEET 4 A 5 GLY A 637 ASN A 641 1 O ALA A 639 N ARG A 607 SHEET 5 A 5 LYS A 486 LEU A 488 1 N LEU A 488 O VAL A 640 SHEET 1 B 4 THR A 191 PRO A 192 0 SHEET 2 B 4 ILE A 176 ASP A 186 -1 N ASP A 186 O THR A 191 SHEET 3 B 4 VAL A 457 ILE A 467 -1 O PHE A 466 N VAL A 177 SHEET 4 B 4 LYS A 506 ALA A 507 -1 O LYS A 506 N ILE A 467 SHEET 1 C 3 TYR A 224 THR A 229 0 SHEET 2 C 3 ILE A 206 GLU A 215 -1 N ILE A 212 O ALA A 227 SHEET 3 C 3 ALA A 437 PHE A 443 -1 O GLU A 438 N ILE A 211 SHEET 1 D 4 TYR A 295 ARG A 297 0 SHEET 2 D 4 GLU A 304 PRO A 309 -1 O VAL A 305 N VAL A 296 SHEET 3 D 4 ASN A 240 VAL A 243 1 N MET A 241 O ILE A 306 SHEET 4 D 4 VAL A 322 SER A 324 -1 O VAL A 322 N TRP A 242 SHEET 1 E 3 LYS A 259 SER A 266 0 SHEET 2 E 3 TYR A 249 ARG A 256 -1 N ALA A 252 O TRP A 263 SHEET 3 E 3 GLU A 279 GLU A 285 -1 O ILE A 283 N LYS A 251 SHEET 1 F 2 ILE A 409 PHE A 410 0 SHEET 2 F 2 LYS A 418 PRO A 419 -1 O LYS A 418 N PHE A 410 SHEET 1 G 3 ALA A 509 ARG A 510 0 SHEET 2 G 3 ASP A 521 ILE A 526 -1 O VAL A 525 N ARG A 510 SHEET 3 G 3 PRO A 517 LEU A 518 -1 N LEU A 518 O TRP A 524 SHEET 1 H 2 GLY A 644 LEU A 646 0 SHEET 2 H 2 PHE A 687 TRP A 689 1 O TRP A 689 N THR A 645 CISPEP 1 LEU A 488 PRO A 489 0 -0.43 CISPEP 2 TYR A 602 PRO A 603 0 0.01 SITE 1 AC1 9 GLY A 84 SER A 85 PRO A 86 HIS A 196 SITE 2 AC1 9 ARG A 510 HOH A 943 HOH A 994 HOH A1059 SITE 3 AC1 9 HOH A1189 SITE 1 AC2 4 SER A 652 LYS A 653 SER A 654 HOH A1715 SITE 1 AC3 5 ARG A 93 GLU A 200 GLY A 201 GLU A 202 SITE 2 AC3 5 ASP A 203 SITE 1 AC4 4 ARG A 492 LYS A 611 HOH A1101 HOH A1235 SITE 1 AC5 5 LYS A 506 ARG A 510 HOH A1079 HOH A1260 SITE 2 AC5 5 HOH A1475 SITE 1 AC6 5 ARG A 182 ARG A 184 ILE A 206 HOH A1046 SITE 2 AC6 5 HOH A1515 SITE 1 AC7 5 THR A 229 LEU A 230 ARG A 231 TYR A 401 SITE 2 AC7 5 HOH A1488 SITE 1 AC8 7 TRP A 185 GLY A 190 PHE A 275 LYS A 459 SITE 2 AC8 7 HOH A 971 HOH A1104 HOH A1484 CRYST1 186.196 186.196 91.428 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005371 0.003101 0.000000 0.00000 SCALE2 0.000000 0.006202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010938 0.00000