HEADER HYDROLASE 05-JUL-04 1WM9 TITLE STRUCTURE OF GTP CYCLOHYDROLASE I FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP CYCLOHYDROLASE I; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 EC: 3.5.4.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS BETA BARREL, HYDROLASE, PTERIDINE, TETRAHYDROBIOPTERIN, STRUCTURAL KEYWDS 2 GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 13-MAR-24 1WM9 1 REMARK LINK REVDAT 4 13-JUL-11 1WM9 1 VERSN REVDAT 3 24-FEB-09 1WM9 1 VERSN REVDAT 2 04-OCT-05 1WM9 1 JRNL DBREF REVDAT 1 19-JUL-05 1WM9 0 JRNL AUTH Y.TANAKA,N.NAKAGAWA,S.KURAMITSU,S.YOKOYAMA,R.MASUI JRNL TITL NOVEL REACTION MECHANISM OF GTP CYCLOHYDROLASE I. JRNL TITL 2 HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHY OF THERMUS JRNL TITL 3 THERMOPHILUS HB8 ENZYME COMPLEXED WITH A TRANSITION STATE JRNL TITL 4 ANALOGUE, THE 8-OXOGUANINE DERIVATIVE. JRNL REF J.BIOCHEM.(TOKYO) V. 138 263 2005 JRNL REFN ISSN 0021-924X JRNL PMID 16169877 JRNL DOI 10.1093/JB/MVI120 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 55492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7326 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45PX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.11000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.23850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.11000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 55.23850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 49820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -643.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 PRO A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLN A 10 REMARK 465 GLU A 11 REMARK 465 ARG A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 MET A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 MET A 19 REMARK 465 VAL A 20 REMARK 465 GLU A 21 REMARK 465 LEU A 22 REMARK 465 GLU A 23 REMARK 465 ASP A 24 REMARK 465 THR A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 THR A 28 REMARK 465 PHE A 29 REMARK 465 ALA A 30 REMARK 465 THR A 31 REMARK 465 ASP A 217 REMARK 465 GLY A 218 REMARK 465 THR A 219 REMARK 465 ALA A 220 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 GLY B 4 REMARK 465 PRO B 5 REMARK 465 GLN B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 GLY B 9 REMARK 465 GLN B 10 REMARK 465 GLU B 11 REMARK 465 ARG B 12 REMARK 465 GLY B 13 REMARK 465 SER B 14 REMARK 465 MET B 15 REMARK 465 GLU B 16 REMARK 465 ARG B 17 REMARK 465 LYS B 18 REMARK 465 MET B 19 REMARK 465 VAL B 20 REMARK 465 GLU B 21 REMARK 465 LEU B 22 REMARK 465 GLU B 23 REMARK 465 ASP B 24 REMARK 465 THR B 25 REMARK 465 GLY B 26 REMARK 465 LEU B 27 REMARK 465 THR B 28 REMARK 465 PHE B 29 REMARK 465 ALA B 30 REMARK 465 THR B 31 REMARK 465 ASP B 217 REMARK 465 GLY B 218 REMARK 465 THR B 219 REMARK 465 ALA B 220 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 PRO C 3 REMARK 465 GLY C 4 REMARK 465 PRO C 5 REMARK 465 GLN C 6 REMARK 465 SER C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 9 REMARK 465 GLN C 10 REMARK 465 GLU C 11 REMARK 465 ARG C 12 REMARK 465 GLY C 13 REMARK 465 SER C 14 REMARK 465 MET C 15 REMARK 465 GLU C 16 REMARK 465 ARG C 17 REMARK 465 LYS C 18 REMARK 465 MET C 19 REMARK 465 VAL C 20 REMARK 465 GLU C 21 REMARK 465 LEU C 22 REMARK 465 GLU C 23 REMARK 465 ASP C 24 REMARK 465 THR C 25 REMARK 465 GLY C 26 REMARK 465 LEU C 27 REMARK 465 THR C 28 REMARK 465 PHE C 29 REMARK 465 ALA C 30 REMARK 465 THR C 31 REMARK 465 ASP C 217 REMARK 465 GLY C 218 REMARK 465 THR C 219 REMARK 465 ALA C 220 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 PRO D 3 REMARK 465 GLY D 4 REMARK 465 PRO D 5 REMARK 465 GLN D 6 REMARK 465 SER D 7 REMARK 465 GLY D 8 REMARK 465 GLY D 9 REMARK 465 GLN D 10 REMARK 465 GLU D 11 REMARK 465 ARG D 12 REMARK 465 GLY D 13 REMARK 465 SER D 14 REMARK 465 MET D 15 REMARK 465 GLU D 16 REMARK 465 ARG D 17 REMARK 465 LYS D 18 REMARK 465 MET D 19 REMARK 465 VAL D 20 REMARK 465 GLU D 21 REMARK 465 LEU D 22 REMARK 465 GLU D 23 REMARK 465 ASP D 24 REMARK 465 THR D 25 REMARK 465 GLY D 26 REMARK 465 LEU D 27 REMARK 465 THR D 28 REMARK 465 PHE D 29 REMARK 465 ALA D 30 REMARK 465 THR D 31 REMARK 465 ASP D 217 REMARK 465 GLY D 218 REMARK 465 THR D 219 REMARK 465 ALA D 220 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 PRO E 3 REMARK 465 GLY E 4 REMARK 465 PRO E 5 REMARK 465 GLN E 6 REMARK 465 SER E 7 REMARK 465 GLY E 8 REMARK 465 GLY E 9 REMARK 465 GLN E 10 REMARK 465 GLU E 11 REMARK 465 ARG E 12 REMARK 465 GLY E 13 REMARK 465 SER E 14 REMARK 465 MET E 15 REMARK 465 GLU E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 MET E 19 REMARK 465 VAL E 20 REMARK 465 GLU E 21 REMARK 465 LEU E 22 REMARK 465 GLU E 23 REMARK 465 ASP E 24 REMARK 465 THR E 25 REMARK 465 GLY E 26 REMARK 465 LEU E 27 REMARK 465 THR E 28 REMARK 465 PHE E 29 REMARK 465 ALA E 30 REMARK 465 THR E 31 REMARK 465 GLU E 32 REMARK 465 ASP E 217 REMARK 465 GLY E 218 REMARK 465 THR E 219 REMARK 465 ALA E 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 87 42.82 -103.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 108 SG REMARK 620 2 HIS A 111 ND1 105.1 REMARK 620 3 CYS A 179 SG 110.9 109.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 108 SG REMARK 620 2 HIS B 111 ND1 112.4 REMARK 620 3 CYS B 179 SG 119.6 104.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 108 SG REMARK 620 2 HIS C 111 ND1 108.6 REMARK 620 3 CYS C 179 SG 117.4 111.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 108 SG REMARK 620 2 HIS D 111 ND1 106.1 REMARK 620 3 CYS D 179 SG 112.0 112.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E1005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 108 SG REMARK 620 2 HIS E 111 ND1 110.7 REMARK 620 3 CYS E 179 SG 107.4 110.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN E 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000188.1 RELATED DB: TARGETDB DBREF 1WM9 A 1 220 UNP Q5SH52 Q5SH52_THET8 1 220 DBREF 1WM9 B 1 220 UNP Q5SH52 Q5SH52_THET8 1 220 DBREF 1WM9 C 1 220 UNP Q5SH52 Q5SH52_THET8 1 220 DBREF 1WM9 D 1 220 UNP Q5SH52 Q5SH52_THET8 1 220 DBREF 1WM9 E 1 220 UNP Q5SH52 Q5SH52_THET8 1 220 SEQRES 1 A 220 MET SER PRO GLY PRO GLN SER GLY GLY GLN GLU ARG GLY SEQRES 2 A 220 SER MET GLU ARG LYS MET VAL GLU LEU GLU ASP THR GLY SEQRES 3 A 220 LEU THR PHE ALA THR GLU VAL ASP LEU GLU ARG LEU GLN SEQRES 4 A 220 ALA LEU ALA ALA GLU TRP LEU GLN VAL ILE GLY GLU ASP SEQRES 5 A 220 PRO GLY ARG GLU GLY LEU LEU LYS THR PRO GLU ARG VAL SEQRES 6 A 220 ALA LYS ALA TRP ALA PHE LEU THR ARG GLY TYR ARG GLN SEQRES 7 A 220 ARG LEU GLU GLU VAL VAL GLY GLY ALA VAL PHE PRO ALA SEQRES 8 A 220 GLU GLY SER GLU MET VAL VAL VAL LYS GLY VAL GLU PHE SEQRES 9 A 220 TYR SER MET CYS GLU HIS HIS LEU LEU PRO PHE PHE GLY SEQRES 10 A 220 LYS VAL HIS ILE GLY TYR ILE PRO ASP GLY LYS ILE LEU SEQRES 11 A 220 GLY LEU SER LYS PHE ALA ARG ILE VAL ASP MET PHE ALA SEQRES 12 A 220 ARG ARG LEU GLN VAL GLN GLU ARG LEU ALA VAL GLN ILE SEQRES 13 A 220 ALA GLU ALA ILE GLN GLU VAL LEU GLU PRO GLN GLY VAL SEQRES 14 A 220 GLY VAL VAL VAL GLU GLY VAL HIS LEU CYS MET MET MET SEQRES 15 A 220 ARG GLY VAL GLU LYS GLN HIS SER ARG THR VAL THR SER SEQRES 16 A 220 ALA MET LEU GLY VAL PHE ARG GLU ASN GLN LYS THR ARG SEQRES 17 A 220 GLU GLU PHE LEU SER HIS LEU ARG ASP GLY THR ALA SEQRES 1 B 220 MET SER PRO GLY PRO GLN SER GLY GLY GLN GLU ARG GLY SEQRES 2 B 220 SER MET GLU ARG LYS MET VAL GLU LEU GLU ASP THR GLY SEQRES 3 B 220 LEU THR PHE ALA THR GLU VAL ASP LEU GLU ARG LEU GLN SEQRES 4 B 220 ALA LEU ALA ALA GLU TRP LEU GLN VAL ILE GLY GLU ASP SEQRES 5 B 220 PRO GLY ARG GLU GLY LEU LEU LYS THR PRO GLU ARG VAL SEQRES 6 B 220 ALA LYS ALA TRP ALA PHE LEU THR ARG GLY TYR ARG GLN SEQRES 7 B 220 ARG LEU GLU GLU VAL VAL GLY GLY ALA VAL PHE PRO ALA SEQRES 8 B 220 GLU GLY SER GLU MET VAL VAL VAL LYS GLY VAL GLU PHE SEQRES 9 B 220 TYR SER MET CYS GLU HIS HIS LEU LEU PRO PHE PHE GLY SEQRES 10 B 220 LYS VAL HIS ILE GLY TYR ILE PRO ASP GLY LYS ILE LEU SEQRES 11 B 220 GLY LEU SER LYS PHE ALA ARG ILE VAL ASP MET PHE ALA SEQRES 12 B 220 ARG ARG LEU GLN VAL GLN GLU ARG LEU ALA VAL GLN ILE SEQRES 13 B 220 ALA GLU ALA ILE GLN GLU VAL LEU GLU PRO GLN GLY VAL SEQRES 14 B 220 GLY VAL VAL VAL GLU GLY VAL HIS LEU CYS MET MET MET SEQRES 15 B 220 ARG GLY VAL GLU LYS GLN HIS SER ARG THR VAL THR SER SEQRES 16 B 220 ALA MET LEU GLY VAL PHE ARG GLU ASN GLN LYS THR ARG SEQRES 17 B 220 GLU GLU PHE LEU SER HIS LEU ARG ASP GLY THR ALA SEQRES 1 C 220 MET SER PRO GLY PRO GLN SER GLY GLY GLN GLU ARG GLY SEQRES 2 C 220 SER MET GLU ARG LYS MET VAL GLU LEU GLU ASP THR GLY SEQRES 3 C 220 LEU THR PHE ALA THR GLU VAL ASP LEU GLU ARG LEU GLN SEQRES 4 C 220 ALA LEU ALA ALA GLU TRP LEU GLN VAL ILE GLY GLU ASP SEQRES 5 C 220 PRO GLY ARG GLU GLY LEU LEU LYS THR PRO GLU ARG VAL SEQRES 6 C 220 ALA LYS ALA TRP ALA PHE LEU THR ARG GLY TYR ARG GLN SEQRES 7 C 220 ARG LEU GLU GLU VAL VAL GLY GLY ALA VAL PHE PRO ALA SEQRES 8 C 220 GLU GLY SER GLU MET VAL VAL VAL LYS GLY VAL GLU PHE SEQRES 9 C 220 TYR SER MET CYS GLU HIS HIS LEU LEU PRO PHE PHE GLY SEQRES 10 C 220 LYS VAL HIS ILE GLY TYR ILE PRO ASP GLY LYS ILE LEU SEQRES 11 C 220 GLY LEU SER LYS PHE ALA ARG ILE VAL ASP MET PHE ALA SEQRES 12 C 220 ARG ARG LEU GLN VAL GLN GLU ARG LEU ALA VAL GLN ILE SEQRES 13 C 220 ALA GLU ALA ILE GLN GLU VAL LEU GLU PRO GLN GLY VAL SEQRES 14 C 220 GLY VAL VAL VAL GLU GLY VAL HIS LEU CYS MET MET MET SEQRES 15 C 220 ARG GLY VAL GLU LYS GLN HIS SER ARG THR VAL THR SER SEQRES 16 C 220 ALA MET LEU GLY VAL PHE ARG GLU ASN GLN LYS THR ARG SEQRES 17 C 220 GLU GLU PHE LEU SER HIS LEU ARG ASP GLY THR ALA SEQRES 1 D 220 MET SER PRO GLY PRO GLN SER GLY GLY GLN GLU ARG GLY SEQRES 2 D 220 SER MET GLU ARG LYS MET VAL GLU LEU GLU ASP THR GLY SEQRES 3 D 220 LEU THR PHE ALA THR GLU VAL ASP LEU GLU ARG LEU GLN SEQRES 4 D 220 ALA LEU ALA ALA GLU TRP LEU GLN VAL ILE GLY GLU ASP SEQRES 5 D 220 PRO GLY ARG GLU GLY LEU LEU LYS THR PRO GLU ARG VAL SEQRES 6 D 220 ALA LYS ALA TRP ALA PHE LEU THR ARG GLY TYR ARG GLN SEQRES 7 D 220 ARG LEU GLU GLU VAL VAL GLY GLY ALA VAL PHE PRO ALA SEQRES 8 D 220 GLU GLY SER GLU MET VAL VAL VAL LYS GLY VAL GLU PHE SEQRES 9 D 220 TYR SER MET CYS GLU HIS HIS LEU LEU PRO PHE PHE GLY SEQRES 10 D 220 LYS VAL HIS ILE GLY TYR ILE PRO ASP GLY LYS ILE LEU SEQRES 11 D 220 GLY LEU SER LYS PHE ALA ARG ILE VAL ASP MET PHE ALA SEQRES 12 D 220 ARG ARG LEU GLN VAL GLN GLU ARG LEU ALA VAL GLN ILE SEQRES 13 D 220 ALA GLU ALA ILE GLN GLU VAL LEU GLU PRO GLN GLY VAL SEQRES 14 D 220 GLY VAL VAL VAL GLU GLY VAL HIS LEU CYS MET MET MET SEQRES 15 D 220 ARG GLY VAL GLU LYS GLN HIS SER ARG THR VAL THR SER SEQRES 16 D 220 ALA MET LEU GLY VAL PHE ARG GLU ASN GLN LYS THR ARG SEQRES 17 D 220 GLU GLU PHE LEU SER HIS LEU ARG ASP GLY THR ALA SEQRES 1 E 220 MET SER PRO GLY PRO GLN SER GLY GLY GLN GLU ARG GLY SEQRES 2 E 220 SER MET GLU ARG LYS MET VAL GLU LEU GLU ASP THR GLY SEQRES 3 E 220 LEU THR PHE ALA THR GLU VAL ASP LEU GLU ARG LEU GLN SEQRES 4 E 220 ALA LEU ALA ALA GLU TRP LEU GLN VAL ILE GLY GLU ASP SEQRES 5 E 220 PRO GLY ARG GLU GLY LEU LEU LYS THR PRO GLU ARG VAL SEQRES 6 E 220 ALA LYS ALA TRP ALA PHE LEU THR ARG GLY TYR ARG GLN SEQRES 7 E 220 ARG LEU GLU GLU VAL VAL GLY GLY ALA VAL PHE PRO ALA SEQRES 8 E 220 GLU GLY SER GLU MET VAL VAL VAL LYS GLY VAL GLU PHE SEQRES 9 E 220 TYR SER MET CYS GLU HIS HIS LEU LEU PRO PHE PHE GLY SEQRES 10 E 220 LYS VAL HIS ILE GLY TYR ILE PRO ASP GLY LYS ILE LEU SEQRES 11 E 220 GLY LEU SER LYS PHE ALA ARG ILE VAL ASP MET PHE ALA SEQRES 12 E 220 ARG ARG LEU GLN VAL GLN GLU ARG LEU ALA VAL GLN ILE SEQRES 13 E 220 ALA GLU ALA ILE GLN GLU VAL LEU GLU PRO GLN GLY VAL SEQRES 14 E 220 GLY VAL VAL VAL GLU GLY VAL HIS LEU CYS MET MET MET SEQRES 15 E 220 ARG GLY VAL GLU LYS GLN HIS SER ARG THR VAL THR SER SEQRES 16 E 220 ALA MET LEU GLY VAL PHE ARG GLU ASN GLN LYS THR ARG SEQRES 17 E 220 GLU GLU PHE LEU SER HIS LEU ARG ASP GLY THR ALA HET ZN A1001 1 HET ZN B1002 1 HET ZN C1003 1 HET ZN D1004 1 HET ZN E1005 1 HETNAM ZN ZINC ION FORMUL 6 ZN 5(ZN 2+) FORMUL 11 HOH *346(H2 O) HELIX 1 1 ASP A 34 GLY A 50 1 17 HELIX 2 2 LYS A 60 THR A 73 1 14 HELIX 3 3 ARG A 79 GLY A 85 1 7 HELIX 4 4 GLY A 131 ARG A 144 1 14 HELIX 5 5 VAL A 148 GLU A 165 1 18 HELIX 6 6 LEU A 178 MET A 182 1 5 HELIX 7 7 VAL A 200 ASN A 204 1 5 HELIX 8 8 ASN A 204 ARG A 216 1 13 HELIX 9 9 ASP B 34 GLY B 50 1 17 HELIX 10 10 LYS B 60 THR B 73 1 14 HELIX 11 11 ARG B 74 GLN B 78 5 5 HELIX 12 12 ARG B 79 GLY B 85 1 7 HELIX 13 13 GLY B 131 ARG B 144 1 14 HELIX 14 14 VAL B 148 GLU B 165 1 18 HELIX 15 15 LEU B 178 MET B 182 1 5 HELIX 16 16 VAL B 200 ASN B 204 1 5 HELIX 17 17 ASN B 204 LEU B 215 1 12 HELIX 18 18 ASP C 34 ILE C 49 1 16 HELIX 19 19 LYS C 60 THR C 73 1 14 HELIX 20 20 ARG C 74 GLN C 78 5 5 HELIX 21 21 ARG C 79 GLY C 85 1 7 HELIX 22 22 GLY C 131 ARG C 144 1 14 HELIX 23 23 VAL C 148 GLU C 165 1 18 HELIX 24 24 LEU C 178 MET C 182 1 5 HELIX 25 25 VAL C 200 ASN C 204 1 5 HELIX 26 26 ASN C 204 LEU C 215 1 12 HELIX 27 27 ASP D 34 ILE D 49 1 16 HELIX 28 28 LYS D 60 LEU D 72 1 13 HELIX 29 29 THR D 73 GLN D 78 5 6 HELIX 30 30 ARG D 79 GLY D 85 1 7 HELIX 31 31 GLY D 131 ARG D 144 1 14 HELIX 32 32 VAL D 148 LEU D 164 1 17 HELIX 33 33 LEU D 178 MET D 182 1 5 HELIX 34 34 VAL D 200 ASN D 204 1 5 HELIX 35 35 ASN D 204 LEU D 215 1 12 HELIX 36 36 VAL E 33 ILE E 49 1 17 HELIX 37 37 ARG E 55 LEU E 59 5 5 HELIX 38 38 LYS E 60 THR E 73 1 14 HELIX 39 39 ARG E 74 GLN E 78 5 5 HELIX 40 40 ARG E 79 GLY E 85 1 7 HELIX 41 41 GLY E 131 ARG E 144 1 14 HELIX 42 42 VAL E 148 GLU E 165 1 18 HELIX 43 43 LEU E 178 MET E 182 1 5 HELIX 44 44 VAL E 200 ASN E 204 1 5 HELIX 45 45 ASN E 204 LEU E 215 1 12 SHEET 1 A 2 VAL A 88 PRO A 90 0 SHEET 2 A 2 LYS A 128 LEU A 130 -1 N ILE A 129 O PHE A 89 SHEET 1 B30 LEU A 146 GLN A 147 0 SHEET 2 B30 VAL A 97 CYS A 108 1 O MET A 107 N GLN A 147 SHEET 3 B30 PRO A 114 ILE A 124 -1 O PHE A 115 N SER A 106 SHEET 4 B30 GLY A 168 HIS A 177 -1 O GLY A 168 N ILE A 124 SHEET 5 B30 ARG A 191 GLY A 199 -1 N THR A 192 O GLY A 175 SHEET 6 B30 VAL B 97 CYS B 108 -1 O VAL B 98 N VAL A 193 SHEET 7 B30 LEU B 146 GLN B 147 1 N GLN B 147 O MET B 107 SHEET 8 B30 VAL B 97 CYS B 108 1 O MET B 107 N GLN B 147 SHEET 9 B30 PRO B 114 ILE B 124 -1 N PHE B 115 O SER B 106 SHEET 10 B30 GLY B 168 HIS B 177 -1 O GLY B 168 N ILE B 124 SHEET 11 B30 ARG B 191 GLY B 199 -1 N THR B 192 O GLY B 175 SHEET 12 B30 VAL C 97 CYS C 108 -1 O VAL C 98 N VAL B 193 SHEET 13 B30 LEU C 146 GLN C 147 1 N GLN C 147 O MET C 107 SHEET 14 B30 VAL C 97 CYS C 108 1 O MET C 107 N GLN C 147 SHEET 15 B30 PRO C 114 ILE C 124 -1 O PHE C 115 N SER C 106 SHEET 16 B30 GLY C 168 HIS C 177 -1 O GLY C 168 N ILE C 124 SHEET 17 B30 ARG C 191 GLY C 199 -1 N THR C 192 O GLY C 175 SHEET 18 B30 VAL D 97 CYS D 108 -1 O VAL D 98 N VAL C 193 SHEET 19 B30 LEU D 146 GLN D 147 1 N GLN D 147 O MET D 107 SHEET 20 B30 VAL D 97 CYS D 108 1 O MET D 107 N GLN D 147 SHEET 21 B30 PRO D 114 ILE D 124 -1 O PHE D 115 N SER D 106 SHEET 22 B30 GLY D 168 HIS D 177 -1 O GLY D 168 N ILE D 124 SHEET 23 B30 ARG D 191 GLY D 199 -1 N THR D 192 O GLY D 175 SHEET 24 B30 VAL E 97 CYS E 108 -1 O VAL E 98 N VAL D 193 SHEET 25 B30 LEU E 146 GLN E 147 1 N GLN E 147 O MET E 107 SHEET 26 B30 VAL E 97 CYS E 108 1 O MET E 107 N GLN E 147 SHEET 27 B30 PRO E 114 ILE E 124 -1 O PHE E 115 N SER E 106 SHEET 28 B30 GLY E 168 HIS E 177 -1 O GLY E 168 N ILE E 124 SHEET 29 B30 ARG E 191 GLY E 199 -1 N THR E 192 O GLY E 175 SHEET 30 B30 VAL A 97 CYS A 108 -1 O VAL A 98 N VAL E 193 SHEET 1 C 2 VAL B 88 PRO B 90 0 SHEET 2 C 2 LYS B 128 LEU B 130 -1 N ILE B 129 O PHE B 89 SHEET 1 D 2 VAL C 88 PRO C 90 0 SHEET 2 D 2 LYS C 128 LEU C 130 -1 N ILE C 129 O PHE C 89 SHEET 1 E 2 VAL D 88 PRO D 90 0 SHEET 2 E 2 LYS D 128 LEU D 130 -1 N ILE D 129 O PHE D 89 SHEET 1 F 2 VAL E 88 PRO E 90 0 SHEET 2 F 2 LYS E 128 LEU E 130 -1 N ILE E 129 O PHE E 89 LINK SG CYS A 108 ZN ZN A1001 1555 1555 2.59 LINK ND1 HIS A 111 ZN ZN A1001 1555 1555 2.46 LINK SG CYS A 179 ZN ZN A1001 1555 1555 2.28 LINK SG CYS B 108 ZN ZN B1002 1555 1555 2.60 LINK ND1 HIS B 111 ZN ZN B1002 1555 1555 2.41 LINK SG CYS B 179 ZN ZN B1002 1555 1555 2.38 LINK SG CYS C 108 ZN ZN C1003 1555 1555 2.42 LINK ND1 HIS C 111 ZN ZN C1003 1555 1555 2.61 LINK SG CYS C 179 ZN ZN C1003 1555 1555 2.52 LINK SG CYS D 108 ZN ZN D1004 1555 1555 2.70 LINK ND1 HIS D 111 ZN ZN D1004 1555 1555 2.27 LINK SG CYS D 179 ZN ZN D1004 1555 1555 2.50 LINK SG CYS E 108 ZN ZN E1005 1555 1555 2.54 LINK ND1 HIS E 111 ZN ZN E1005 1555 1555 2.55 LINK SG CYS E 179 ZN ZN E1005 1555 1555 2.47 SITE 1 AC1 3 CYS A 108 HIS A 111 CYS A 179 SITE 1 AC2 3 CYS B 108 HIS B 111 CYS B 179 SITE 1 AC3 4 CYS C 108 HIS C 111 CYS C 179 HOH C1018 SITE 1 AC4 3 CYS D 108 HIS D 111 CYS D 179 SITE 1 AC5 3 CYS E 108 HIS E 111 CYS E 179 CRYST1 160.220 110.477 70.650 90.00 105.27 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006241 0.000000 0.001704 0.00000 SCALE2 0.000000 0.009052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014672 0.00000