HEADER OXIDOREDUCTASE 09-JUL-04 1WMJ TITLE SOLUTION STRUCTURE OF THIOREDOXIN TYPE H FROM ORYZA SATIVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN H-TYPE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRX-H, PHLOEM SAP 13 KDA PROTEIN-1; COMPND 5 EC: 1.8.4.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST32A KEYWDS STRUCTURAL GENOMICS, PROGRAM FOR RICE GENOME RESEARCH, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.KUMETA,H.OGURA,K.AKAGI,E.KATOH,F.INAGAKI REVDAT 3 02-MAR-22 1WMJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WMJ 1 VERSN REVDAT 1 25-OCT-05 1WMJ 0 JRNL AUTH H.KUMETA,H.OGURA,K.AKAGI,E.KATOH,F.INAGAKI JRNL TITL SOLUTION STRUCTURE OF THIOREDOXIN TYPE H FROM ORYZA SATIVA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.06 REMARK 3 AUTHORS : WELCH (VNMR), GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WMJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023745. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.77MM U-13C,15N;20MM TRIS-HCL REMARK 210 PH 7.4; 100MM NACL; 1MM DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 23, SPARKY 3.110, CYANA REMARK 210 1.06 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 MET A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 GLU A -2 REMARK 465 GLU A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 3 39.28 33.58 REMARK 500 1 GLU A 4 93.08 60.40 REMARK 500 1 GLU A 5 -155.93 -92.47 REMARK 500 1 VAL A 8 95.49 -52.95 REMARK 500 1 ILE A 9 168.29 -43.39 REMARK 500 1 CYS A 11 159.93 -47.48 REMARK 500 1 HIS A 12 36.29 -165.26 REMARK 500 1 ASN A 13 26.90 -178.77 REMARK 500 1 LYS A 14 -69.11 64.90 REMARK 500 1 PHE A 35 -164.24 -61.73 REMARK 500 1 THR A 36 136.02 161.71 REMARK 500 1 SER A 38 -34.36 -167.06 REMARK 500 1 CYS A 40 -59.00 77.78 REMARK 500 1 CYS A 43 31.27 35.02 REMARK 500 1 ARG A 44 -48.92 -158.43 REMARK 500 1 PRO A 48 4.23 -69.74 REMARK 500 1 PHE A 50 -71.92 -63.16 REMARK 500 1 PHE A 62 152.86 58.31 REMARK 500 1 LEU A 63 149.07 170.48 REMARK 500 1 VAL A 67 34.29 -82.56 REMARK 500 1 LYS A 71 -34.57 -32.67 REMARK 500 1 GLU A 72 -28.86 -36.13 REMARK 500 1 ASN A 78 72.36 72.75 REMARK 500 1 GLU A 80 -70.34 86.22 REMARK 500 1 ALA A 81 97.75 169.11 REMARK 500 1 MET A 82 168.69 174.93 REMARK 500 1 PRO A 83 36.31 -69.82 REMARK 500 1 PHE A 85 40.41 -81.78 REMARK 500 1 LEU A 86 142.11 -33.12 REMARK 500 1 ASP A 90 -6.98 81.49 REMARK 500 1 ALA A 92 -86.36 -145.67 REMARK 500 1 GLU A 93 103.64 -177.60 REMARK 500 1 ASP A 95 179.85 159.18 REMARK 500 1 VAL A 97 -95.31 -141.44 REMARK 500 1 VAL A 98 144.57 159.32 REMARK 500 1 ALA A 100 14.22 -155.50 REMARK 500 1 LEU A 105 -75.53 -78.72 REMARK 500 1 GLN A 106 -18.33 -48.86 REMARK 500 1 ALA A 115 14.80 54.92 REMARK 500 1 THR A 116 -32.50 -133.95 REMARK 500 1 ALA A 117 86.03 53.39 REMARK 500 1 SER A 119 89.89 -158.84 REMARK 500 1 ALA A 120 168.64 56.29 REMARK 500 1 SER A 121 -45.72 -136.11 REMARK 500 2 ALA A 2 -99.78 51.82 REMARK 500 2 ALA A 3 69.88 72.14 REMARK 500 2 GLU A 4 98.18 50.50 REMARK 500 2 GLU A 5 -153.24 -103.73 REMARK 500 2 VAL A 8 94.68 -50.89 REMARK 500 2 ILE A 9 167.31 -42.36 REMARK 500 REMARK 500 THIS ENTRY HAS 840 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EP7 RELATED DB: PDB REMARK 900 A SAME PROTEIN FROM CHLAMYDOMONAS REINHARDTII REMARK 900 RELATED ID: 1ERT RELATED DB: PDB REMARK 900 A SAME PROTEIN FROM HUMAN (REDUCED FORM) REMARK 900 RELATED ID: 1ERU RELATED DB: PDB REMARK 900 A SAME PROTEIN FROM HUMAN (OXIDIZED FORM) REMARK 900 RELATED ID: 1SRX RELATED DB: PDB REMARK 900 A SAME PROTEIN FROM E. COLI DBREF 1WMJ A 1 122 UNP Q42443 TRXH_ORYSA 1 122 SEQADV 1WMJ GLY A -7 UNP Q42443 CLONING ARTIFACT SEQADV 1WMJ PRO A -6 UNP Q42443 CLONING ARTIFACT SEQADV 1WMJ MET A -5 UNP Q42443 CLONING ARTIFACT SEQADV 1WMJ ALA A -4 UNP Q42443 CLONING ARTIFACT SEQADV 1WMJ ALA A -3 UNP Q42443 CLONING ARTIFACT SEQADV 1WMJ GLU A -2 UNP Q42443 CLONING ARTIFACT SEQADV 1WMJ GLU A -1 UNP Q42443 CLONING ARTIFACT SEQADV 1WMJ GLY A 0 UNP Q42443 CLONING ARTIFACT SEQRES 1 A 130 GLY PRO MET ALA ALA GLU GLU GLY MET ALA ALA GLU GLU SEQRES 2 A 130 GLY VAL VAL ILE ALA CYS HIS ASN LYS ASP GLU PHE ASP SEQRES 3 A 130 ALA GLN MET THR LYS ALA LYS GLU ALA GLY LYS VAL VAL SEQRES 4 A 130 ILE ILE ASP PHE THR ALA SER TRP CYS GLY PRO CYS ARG SEQRES 5 A 130 PHE ILE ALA PRO VAL PHE ALA GLU TYR ALA LYS LYS PHE SEQRES 6 A 130 PRO GLY ALA VAL PHE LEU LYS VAL ASP VAL ASP GLU LEU SEQRES 7 A 130 LYS GLU VAL ALA GLU LYS TYR ASN VAL GLU ALA MET PRO SEQRES 8 A 130 THR PHE LEU PHE ILE LYS ASP GLY ALA GLU ALA ASP LYS SEQRES 9 A 130 VAL VAL GLY ALA ARG LYS ASP ASP LEU GLN ASN THR ILE SEQRES 10 A 130 VAL LYS HIS VAL GLY ALA THR ALA ALA SER ALA SER ALA HELIX 1 1 LYS A 14 GLU A 26 1 13 HELIX 2 2 ILE A 46 PHE A 57 1 12 HELIX 3 3 LEU A 70 GLU A 72 5 3 HELIX 4 4 VAL A 73 ASN A 78 1 6 HELIX 5 5 ASP A 104 VAL A 113 1 10 SHEET 1 A 2 ILE A 33 ASP A 34 0 SHEET 2 A 2 LEU A 63 LYS A 64 1 O LEU A 63 N ASP A 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1