HEADER SUGAR BINDING PROTEIN 21-JUL-04 1WMX TITLE CRYSTAL STRUCTURE OF FAMILY 30 CARBOHYDRATE BINDING MODULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COG3291: FOG: PKD REPEAT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-205; COMPND 5 SYNONYM: FAMILY 30 CARBOHYDRATE BINDING MODULE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCBM KEYWDS CBM30, CARBOHYDRATE BINDING MODULE FAMILY30, CELJ, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HORIGUCHI,M.KONO,A.SUZUKI,T.YAMANE,M.ARAI,K.SAKKA,K.OMIYA REVDAT 4 13-MAR-24 1WMX 1 REMARK REVDAT 3 13-JUL-11 1WMX 1 VERSN REVDAT 2 24-FEB-09 1WMX 1 VERSN REVDAT 1 03-AUG-04 1WMX 0 JRNL AUTH Y.HORIGUCHI,M.KONO,A.SUZUKI,T.YAMANE,M.ARAI,K.SAKKA,K.OMIYA JRNL TITL CRYSTAL STRUCTURE OF FAMILY 30 CARBOHYDRATE BINDING MODULE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 27136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1322 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2940 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.63000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 1.55000 REMARK 3 B13 (A**2) : 4.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.44 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.610 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28642 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 66.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS BUFFER(PH7.5), 10MM NICKEL REMARK 280 CHLORIDE, 1.0M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 TYR A 5 REMARK 465 ARG A 6 REMARK 465 LYS A 7 REMARK 465 ASP A 181 REMARK 465 ASN A 182 REMARK 465 GLU A 183 REMARK 465 LYS A 184 REMARK 465 SER A 185 REMARK 465 ALA A 186 REMARK 465 PRO A 187 REMARK 465 ALA A 188 REMARK 465 ILE A 189 REMARK 465 LYS A 190 REMARK 465 VAL A 191 REMARK 465 ASN A 192 REMARK 465 GLN A 193 REMARK 465 LEU A 194 REMARK 465 GLY A 195 REMARK 465 PHE A 196 REMARK 465 ILE A 197 REMARK 465 PRO A 198 REMARK 465 GLU A 199 REMARK 465 ALA A 200 REMARK 465 GLU A 201 REMARK 465 LYS A 202 REMARK 465 TYR A 203 REMARK 465 ALA A 204 REMARK 465 LEU A 205 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 199 REMARK 465 ALA B 200 REMARK 465 GLU B 201 REMARK 465 LYS B 202 REMARK 465 TYR B 203 REMARK 465 ALA B 204 REMARK 465 LEU B 205 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 46 CG OD1 ND2 REMARK 480 GLU A 83 CG REMARK 480 ASN A 84 CB REMARK 480 THR A 131 OG1 CG2 REMARK 480 GLU B 29 CB REMARK 480 GLN B 80 CG CD OE1 NE2 REMARK 480 GLU B 95 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 184 O HOH B 376 0.88 REMARK 500 N LYS B 190 NE2 GLN B 193 1.85 REMARK 500 OE2 GLU A 110 O HOH A 257 1.88 REMARK 500 C LYS B 184 O HOH B 376 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU B 116 NZ LYS B 190 3656 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 86 C LEU A 87 N -0.169 REMARK 500 GLY A 96 C GLY A 97 N 0.205 REMARK 500 ARG B 6 CD ARG B 6 NE -0.159 REMARK 500 ARG B 6 CZ ARG B 6 NH2 -0.099 REMARK 500 GLU B 95 C GLY B 96 N -0.284 REMARK 500 PRO B 139 C LEU B 140 N -0.319 REMARK 500 CYS B 157 C LEU B 158 N -0.163 REMARK 500 GLU B 183 C LYS B 184 N -0.192 REMARK 500 PRO B 187 C ALA B 188 N -0.211 REMARK 500 GLN B 193 C LEU B 194 N -0.280 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 GLU A 110 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG B 6 CD - NE - CZ ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG B 6 NE - CZ - NH1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 6 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 GLU B 110 CB - CG - CD ANGL. DEV. = 16.6 DEGREES REMARK 500 ILE B 138 O - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO B 139 C - N - CA ANGL. DEV. = 27.1 DEGREES REMARK 500 PRO B 139 C - N - CD ANGL. DEV. = -27.6 DEGREES REMARK 500 PRO B 139 CA - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 PRO B 139 O - C - N ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG B 141 CD - NE - CZ ANGL. DEV. = 18.9 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG B 141 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 MET B 144 CG - SD - CE ANGL. DEV. = 10.2 DEGREES REMARK 500 GLU B 183 O - C - N ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 15 -64.16 -134.92 REMARK 500 TYR A 45 132.31 -174.11 REMARK 500 TRP A 73 -14.28 92.42 REMARK 500 PHE A 89 164.42 177.23 REMARK 500 GLU A 95 -31.10 -130.45 REMARK 500 LYS A 145 72.64 -107.07 REMARK 500 ASN A 147 38.75 -91.10 REMARK 500 ARG A 163 -53.08 -125.51 REMARK 500 SER A 179 -163.04 -120.98 REMARK 500 LYS B 15 -63.31 -134.35 REMARK 500 ASP B 16 -3.86 -145.67 REMARK 500 ARG B 71 46.42 -140.41 REMARK 500 TRP B 73 -12.19 92.01 REMARK 500 GLU B 95 -60.28 -120.49 REMARK 500 MET B 144 37.69 -88.77 REMARK 500 LYS B 145 75.83 -112.21 REMARK 500 ILE B 146 -139.05 -40.08 REMARK 500 ASN B 147 -12.77 104.34 REMARK 500 GLU B 180 -155.71 -122.40 REMARK 500 LYS B 184 164.21 -20.62 REMARK 500 LEU B 194 -8.07 84.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 141 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 96 -13.70 REMARK 500 VAL A 136 22.08 REMARK 500 GLN B 60 -17.22 REMARK 500 GLU B 95 17.26 REMARK 500 GLU B 183 16.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 300 DBREF 1WMX A 1 205 UNP P71140 P71140_CLOTM 31 235 DBREF 1WMX B 1 205 UNP P71140 P71140_CLOTM 31 235 SEQRES 1 A 205 ALA PRO GLU GLY TYR ARG LYS LEU LEU ASP VAL GLN ILE SEQRES 2 A 205 PHE LYS ASP SER PRO VAL VAL GLY TRP SER GLY SER GLY SEQRES 3 A 205 MET GLY GLU LEU GLU THR ILE GLY ASP THR LEU PRO VAL SEQRES 4 A 205 ASP THR THR VAL THR TYR ASN GLY LEU PRO THR LEU ARG SEQRES 5 A 205 LEU ASN VAL GLN THR THR VAL GLN SER GLY TRP TRP ILE SEQRES 6 A 205 SER LEU LEU THR LEU ARG GLY TRP ASN THR HIS ASP LEU SEQRES 7 A 205 SER GLN TYR VAL GLU ASN GLY TYR LEU GLU PHE ASP ILE SEQRES 8 A 205 LYS GLY LYS GLU GLY GLY GLU ASP PHE VAL ILE GLY PHE SEQRES 9 A 205 ARG ASP LYS VAL TYR GLU ARG VAL TYR GLY LEU GLU ILE SEQRES 10 A 205 ASP VAL THR THR VAL ILE SER ASN TYR VAL THR VAL THR SEQRES 11 A 205 THR ASP TRP GLN HIS VAL LYS ILE PRO LEU ARG ASP LEU SEQRES 12 A 205 MET LYS ILE ASN ASN GLY PHE ASP PRO SER SER VAL THR SEQRES 13 A 205 CYS LEU VAL PHE SER LYS ARG TYR ALA ASP PRO PHE THR SEQRES 14 A 205 VAL TRP PHE SER ASP ILE LYS ILE THR SER GLU ASP ASN SEQRES 15 A 205 GLU LYS SER ALA PRO ALA ILE LYS VAL ASN GLN LEU GLY SEQRES 16 A 205 PHE ILE PRO GLU ALA GLU LYS TYR ALA LEU SEQRES 1 B 205 ALA PRO GLU GLY TYR ARG LYS LEU LEU ASP VAL GLN ILE SEQRES 2 B 205 PHE LYS ASP SER PRO VAL VAL GLY TRP SER GLY SER GLY SEQRES 3 B 205 MET GLY GLU LEU GLU THR ILE GLY ASP THR LEU PRO VAL SEQRES 4 B 205 ASP THR THR VAL THR TYR ASN GLY LEU PRO THR LEU ARG SEQRES 5 B 205 LEU ASN VAL GLN THR THR VAL GLN SER GLY TRP TRP ILE SEQRES 6 B 205 SER LEU LEU THR LEU ARG GLY TRP ASN THR HIS ASP LEU SEQRES 7 B 205 SER GLN TYR VAL GLU ASN GLY TYR LEU GLU PHE ASP ILE SEQRES 8 B 205 LYS GLY LYS GLU GLY GLY GLU ASP PHE VAL ILE GLY PHE SEQRES 9 B 205 ARG ASP LYS VAL TYR GLU ARG VAL TYR GLY LEU GLU ILE SEQRES 10 B 205 ASP VAL THR THR VAL ILE SER ASN TYR VAL THR VAL THR SEQRES 11 B 205 THR ASP TRP GLN HIS VAL LYS ILE PRO LEU ARG ASP LEU SEQRES 12 B 205 MET LYS ILE ASN ASN GLY PHE ASP PRO SER SER VAL THR SEQRES 13 B 205 CYS LEU VAL PHE SER LYS ARG TYR ALA ASP PRO PHE THR SEQRES 14 B 205 VAL TRP PHE SER ASP ILE LYS ILE THR SER GLU ASP ASN SEQRES 15 B 205 GLU LYS SER ALA PRO ALA ILE LYS VAL ASN GLN LEU GLY SEQRES 16 B 205 PHE ILE PRO GLU ALA GLU LYS TYR ALA LEU HET SO4 B 300 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *203(H2 O) HELIX 1 1 LEU A 78 VAL A 82 5 5 HELIX 2 2 SER A 124 TYR A 126 5 3 HELIX 3 3 ARG A 141 LEU A 143 5 3 HELIX 4 4 LEU B 78 VAL B 82 5 5 HELIX 5 5 SER B 124 TYR B 126 5 3 HELIX 6 6 LEU B 140 MET B 144 1 5 HELIX 7 7 ASP B 151 SER B 153 5 3 SHEET 1 A 4 VAL A 11 PHE A 14 0 SHEET 2 A 4 PHE A 168 THR A 178 -1 O ILE A 175 N ILE A 13 SHEET 3 A 4 LEU A 48 VAL A 55 -1 N LEU A 51 O PHE A 172 SHEET 4 A 4 VAL A 39 TYR A 45 -1 N ASP A 40 O THR A 50 SHEET 1 B 4 VAL A 11 PHE A 14 0 SHEET 2 B 4 PHE A 168 THR A 178 -1 O ILE A 175 N ILE A 13 SHEET 3 B 4 TYR A 86 GLY A 93 -1 N TYR A 86 O THR A 178 SHEET 4 B 4 GLN A 134 PRO A 139 -1 O GLN A 134 N ILE A 91 SHEET 1 C 5 GLY A 21 SER A 25 0 SHEET 2 C 5 TRP A 64 THR A 69 -1 O ILE A 65 N GLY A 24 SHEET 3 C 5 VAL A 155 SER A 161 -1 O LEU A 158 N LEU A 68 SHEET 4 C 5 VAL A 101 ASP A 106 -1 N GLY A 103 O VAL A 159 SHEET 5 C 5 ASP A 118 VAL A 122 -1 O THR A 121 N ILE A 102 SHEET 1 D 4 VAL B 11 PHE B 14 0 SHEET 2 D 4 PHE B 168 THR B 178 -1 O ILE B 175 N ILE B 13 SHEET 3 D 4 LEU B 48 VAL B 55 -1 N LEU B 51 O PHE B 172 SHEET 4 D 4 VAL B 39 TYR B 45 -1 N TYR B 45 O LEU B 48 SHEET 1 E 4 VAL B 11 PHE B 14 0 SHEET 2 E 4 PHE B 168 THR B 178 -1 O ILE B 175 N ILE B 13 SHEET 3 E 4 TYR B 86 GLY B 93 -1 N GLU B 88 O LYS B 176 SHEET 4 E 4 GLN B 134 PRO B 139 -1 O ILE B 138 N LEU B 87 SHEET 1 F 5 GLY B 21 SER B 25 0 SHEET 2 F 5 TRP B 64 THR B 69 -1 O LEU B 67 N TRP B 22 SHEET 3 F 5 VAL B 155 SER B 161 -1 O PHE B 160 N SER B 66 SHEET 4 F 5 VAL B 101 ASP B 106 -1 N VAL B 101 O SER B 161 SHEET 5 F 5 ASP B 118 VAL B 122 -1 O THR B 121 N ILE B 102 SITE 1 AC1 4 ASP B 10 GLN B 12 ARG B 71 HOH B 410 CRYST1 66.720 81.860 86.930 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011504 0.00000