HEADER OXIDOREDUCTASE 10-AUG-04 1WNX TITLE D136E MUTANT OF HEME OXYGENASE FROM CORYNEBACTERIUM DIPHTHERIAE (HMUO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEME OXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.99.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 1717; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMW172 KEYWDS HEME, ALPHA-HELIX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.UNNO,T.MATSUI,M.IKEDA-SAITO REVDAT 4 10-NOV-21 1WNX 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1WNX 1 VERSN REVDAT 2 08-FEB-05 1WNX 1 JRNL REVDAT 1 09-NOV-04 1WNX 0 JRNL AUTH T.MATSUI,M.FURUKAWA,M.UNNO,T.TOMITA,M.IKEDA-SAITO JRNL TITL ROLES OF DISTAL ASP IN HEME OXYGENASE FROM CORYNEBACTERIUM JRNL TITL 2 DIPHTHERIAE, HMUO: A WATER-DRIVEN OXYGEN ACTIVATION JRNL TITL 3 MECHANISM JRNL REF J.BIOL.CHEM. V. 280 2981 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15528205 JRNL DOI 10.1074/JBC.M410263200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3443 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2269 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3321 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 142 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : -1.58000 REMARK 3 B33 (A**2) : 1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.67000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3534 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3112 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4810 ; 1.888 ; 2.037 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7188 ; 0.944 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 415 ; 5.055 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3927 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 725 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 857 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3643 ; 0.251 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1898 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 276 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.114 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.179 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 112 ; 0.312 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2066 ; 1.182 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3283 ; 2.008 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 3.340 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1527 ; 5.293 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8090 -0.0520 2.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.0652 T22: 0.1110 REMARK 3 T33: 0.0648 T12: -0.0123 REMARK 3 T13: 0.0571 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.5366 L22: 0.5218 REMARK 3 L33: 1.4101 L12: -0.0086 REMARK 3 L13: 0.1094 L23: 0.3025 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.0065 S13: -0.0045 REMARK 3 S21: -0.0132 S22: -0.0175 S23: 0.0486 REMARK 3 S31: -0.0388 S32: -0.0022 S33: 0.0265 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): -52.4080 15.4320 32.9490 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.1081 REMARK 3 T33: 0.0492 T12: 0.0115 REMARK 3 T13: 0.0639 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.2423 L22: 0.6183 REMARK 3 L33: 0.9466 L12: 0.4553 REMARK 3 L13: 0.6117 L23: 0.4247 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: 0.0071 S13: 0.0713 REMARK 3 S21: -0.0213 S22: 0.0183 S23: 0.0175 REMARK 3 S31: -0.0537 S32: -0.0110 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 901 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): -29.0310 9.9770 0.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.1344 REMARK 3 T33: 0.0857 T12: -0.0366 REMARK 3 T13: 0.0526 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 12.9458 L22: 6.3462 REMARK 3 L33: 11.5701 L12: -4.5157 REMARK 3 L13: -3.5948 L23: 2.9052 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.8586 S13: 0.7394 REMARK 3 S21: -0.0519 S22: 0.0843 S23: -0.2536 REMARK 3 S31: -0.1957 S32: 0.8608 S33: -0.1231 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 902 B 902 REMARK 3 ORIGIN FOR THE GROUP (A): -53.6340 25.2430 32.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.0567 REMARK 3 T33: 0.1818 T12: -0.0041 REMARK 3 T13: 0.0223 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 15.2126 L22: 9.3718 REMARK 3 L33: 16.9481 L12: 7.0594 REMARK 3 L13: -2.3157 L23: 11.6088 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.6955 S13: 1.1090 REMARK 3 S21: -0.5590 S22: 0.1580 S23: 0.1751 REMARK 3 S31: -1.2760 S32: 0.6582 S33: -0.1824 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1WNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, SODIUM IODIDE, AMMONIUM SULFATE, REMARK 280 PH 6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.07550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.86100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.07550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.86100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 214 REMARK 465 LEU A 215 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LYS B 213 REMARK 465 GLY B 214 REMARK 465 LEU B 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1097 O HOH B 1138 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 41 CD GLU A 41 OE1 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 29 CG - SD - CE ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 108 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TYR A 109 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 109 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 154 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 MET B 29 CG - SD - CE ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 37 -118.00 -114.40 REMARK 500 SER A 93 -179.05 -171.33 REMARK 500 LEU B 37 -125.66 -111.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 901 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 20 NE2 REMARK 620 2 HEM A 901 NA 90.4 REMARK 620 3 HEM A 901 NB 90.6 86.1 REMARK 620 4 HEM A 901 NC 98.0 171.6 94.4 REMARK 620 5 HEM A 901 ND 96.5 90.4 172.1 88.1 REMARK 620 6 HOH A3017 O 178.4 88.0 89.4 83.7 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 902 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 20 NE2 REMARK 620 2 HEM B 902 NA 83.6 REMARK 620 3 HEM B 902 NB 96.0 89.1 REMARK 620 4 HEM B 902 NC 101.7 172.8 85.6 REMARK 620 5 HEM B 902 ND 92.3 92.1 171.6 92.5 REMARK 620 6 HOH B1196 O 173.1 90.1 86.7 84.8 85.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WNV RELATED DB: PDB REMARK 900 ANOTHER VARIANT OF THE SAME PROTEIN REMARK 900 RELATED ID: 1WNW RELATED DB: PDB REMARK 900 ANOTHER VARIANT OF THE SAME PROTEIN REMARK 900 RELATED ID: 1IW0 RELATED DB: PDB REMARK 900 FERRIC WILD TYPE REMARK 900 RELATED ID: 1IW1 RELATED DB: PDB REMARK 900 FERROUS WILD TYPE REMARK 900 RELATED ID: 1V8X RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH DIOXYGEN DBREF 1WNX A 1 215 UNP P71119 HMUO_CORDI 1 215 DBREF 1WNX B 1 215 UNP P71119 HMUO_CORDI 1 215 SEQADV 1WNX LYS A 34 UNP P71119 GLU 34 SEE REMARK 999 SEQADV 1WNX VAL A 60 UNP P71119 ALA 60 SEE REMARK 999 SEQADV 1WNX GLY A 92 UNP P71119 ASP 92 SEE REMARK 999 SEQADV 1WNX SER A 93 UNP P71119 GLY 93 SEE REMARK 999 SEQADV 1WNX GLU A 136 UNP P71119 ASP 136 ENGINEERED MUTATION SEQADV 1WNX HIS A 192 UNP P71119 ASN 192 SEE REMARK 999 SEQADV 1WNX LYS B 34 UNP P71119 GLU 34 SEE REMARK 999 SEQADV 1WNX VAL B 60 UNP P71119 ALA 60 SEE REMARK 999 SEQADV 1WNX GLY B 92 UNP P71119 ASP 92 SEE REMARK 999 SEQADV 1WNX SER B 93 UNP P71119 GLY 93 SEE REMARK 999 SEQADV 1WNX GLU B 136 UNP P71119 ASP 136 ENGINEERED MUTATION SEQADV 1WNX HIS B 192 UNP P71119 ASN 192 SEE REMARK 999 SEQRES 1 A 215 MET THR THR ALA THR ALA GLY LEU ALA VAL GLU LEU LYS SEQRES 2 A 215 GLN SER THR ALA GLN ALA HIS GLU LYS ALA GLU HIS SER SEQRES 3 A 215 THR PHE MET SER ASP LEU LEU LYS GLY ARG LEU GLY VAL SEQRES 4 A 215 ALA GLU PHE THR ARG LEU GLN GLU GLN ALA TRP LEU PHE SEQRES 5 A 215 TYR THR ALA LEU GLU GLN ALA VAL ASP ALA VAL ARG ALA SEQRES 6 A 215 SER GLY PHE ALA GLU SER LEU LEU ASP PRO ALA LEU ASN SEQRES 7 A 215 ARG ALA GLU VAL LEU ALA ARG ASP LEU ASP LYS LEU ASN SEQRES 8 A 215 GLY SER SER GLU TRP ARG SER ARG ILE THR ALA SER PRO SEQRES 9 A 215 ALA VAL ILE ASP TYR VAL ASN ARG LEU GLU GLU ILE ARG SEQRES 10 A 215 ASP ASN VAL ASP GLY PRO ALA LEU VAL ALA HIS HIS TYR SEQRES 11 A 215 VAL ARG TYR LEU GLY GLU LEU SER GLY GLY GLN VAL ILE SEQRES 12 A 215 ALA ARG MET MET GLN ARG HIS TYR GLY VAL ASP PRO GLU SEQRES 13 A 215 ALA LEU GLY PHE TYR HIS PHE GLU GLY ILE ALA LYS LEU SEQRES 14 A 215 LYS VAL TYR LYS ASP GLU TYR ARG GLU LYS LEU ASN ASN SEQRES 15 A 215 LEU GLU LEU SER ASP GLU GLN ARG GLU HIS LEU LEU LYS SEQRES 16 A 215 GLU ALA THR ASP ALA PHE VAL PHE ASN HIS GLN VAL PHE SEQRES 17 A 215 ALA ASP LEU GLY LYS GLY LEU SEQRES 1 B 215 MET THR THR ALA THR ALA GLY LEU ALA VAL GLU LEU LYS SEQRES 2 B 215 GLN SER THR ALA GLN ALA HIS GLU LYS ALA GLU HIS SER SEQRES 3 B 215 THR PHE MET SER ASP LEU LEU LYS GLY ARG LEU GLY VAL SEQRES 4 B 215 ALA GLU PHE THR ARG LEU GLN GLU GLN ALA TRP LEU PHE SEQRES 5 B 215 TYR THR ALA LEU GLU GLN ALA VAL ASP ALA VAL ARG ALA SEQRES 6 B 215 SER GLY PHE ALA GLU SER LEU LEU ASP PRO ALA LEU ASN SEQRES 7 B 215 ARG ALA GLU VAL LEU ALA ARG ASP LEU ASP LYS LEU ASN SEQRES 8 B 215 GLY SER SER GLU TRP ARG SER ARG ILE THR ALA SER PRO SEQRES 9 B 215 ALA VAL ILE ASP TYR VAL ASN ARG LEU GLU GLU ILE ARG SEQRES 10 B 215 ASP ASN VAL ASP GLY PRO ALA LEU VAL ALA HIS HIS TYR SEQRES 11 B 215 VAL ARG TYR LEU GLY GLU LEU SER GLY GLY GLN VAL ILE SEQRES 12 B 215 ALA ARG MET MET GLN ARG HIS TYR GLY VAL ASP PRO GLU SEQRES 13 B 215 ALA LEU GLY PHE TYR HIS PHE GLU GLY ILE ALA LYS LEU SEQRES 14 B 215 LYS VAL TYR LYS ASP GLU TYR ARG GLU LYS LEU ASN ASN SEQRES 15 B 215 LEU GLU LEU SER ASP GLU GLN ARG GLU HIS LEU LEU LYS SEQRES 16 B 215 GLU ALA THR ASP ALA PHE VAL PHE ASN HIS GLN VAL PHE SEQRES 17 B 215 ALA ASP LEU GLY LYS GLY LEU HET SO4 A1001 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET NA A3001 1 HET HEM A 901 43 HET SO4 B1002 5 HET SO4 B1007 5 HET SO4 B1008 5 HET SO4 B1009 5 HET SO4 B1010 5 HET SO4 B1011 5 HET HEM B 902 43 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 SO4 11(O4 S 2-) FORMUL 8 NA NA 1+ FORMUL 9 HEM 2(C34 H32 FE N4 O4) FORMUL 17 HOH *367(H2 O) HELIX 1 1 GLY A 7 THR A 16 1 10 HELIX 2 2 THR A 16 HIS A 25 1 10 HELIX 3 3 SER A 26 LYS A 34 1 9 HELIX 4 4 GLY A 38 GLY A 67 1 30 HELIX 5 5 ASP A 74 ASN A 78 5 5 HELIX 6 6 ARG A 79 GLY A 92 1 14 HELIX 7 7 GLU A 95 ILE A 100 1 6 HELIX 8 8 SER A 103 ASN A 119 1 17 HELIX 9 9 ASP A 121 GLY A 152 1 32 HELIX 10 10 ASP A 154 HIS A 162 5 9 HELIX 11 11 LYS A 168 ASN A 182 1 15 HELIX 12 12 SER A 186 LYS A 213 1 28 HELIX 13 13 GLY B 7 THR B 16 1 10 HELIX 14 14 THR B 16 HIS B 25 1 10 HELIX 15 15 SER B 26 LYS B 34 1 9 HELIX 16 16 GLY B 38 SER B 66 1 29 HELIX 17 17 ASP B 74 ASN B 78 5 5 HELIX 18 18 ARG B 79 GLY B 92 1 14 HELIX 19 19 GLU B 95 ILE B 100 1 6 HELIX 20 20 SER B 103 VAL B 120 1 18 HELIX 21 21 ASP B 121 GLY B 152 1 32 HELIX 22 22 ASP B 154 HIS B 162 5 9 HELIX 23 23 LYS B 168 LEU B 183 1 16 HELIX 24 24 SER B 186 GLY B 212 1 27 LINK NE2 HIS A 20 FE HEM A 901 1555 1555 1.89 LINK OE2 GLU A 115 NA NA A3001 1555 1555 2.18 LINK FE HEM A 901 O HOH A3017 1555 1555 2.00 LINK NE2 HIS B 20 FE HEM B 902 1555 1555 2.04 LINK FE HEM B 902 O HOH B1196 1555 1555 2.06 SITE 1 AC1 3 SER A 26 THR A 27 HOH A3047 SITE 1 AC2 3 ARG B 112 HIS B 192 HOH B1079 SITE 1 AC3 8 GLN A 14 GLU A 81 ALA A 84 ARG A 97 SITE 2 AC3 8 HOH A3027 HOH A3115 HOH A3124 HOH B1099 SITE 1 AC4 5 GLN A 58 LYS A 173 ARG A 177 HEM A 901 SITE 2 AC4 5 HOH A3138 SITE 1 AC5 7 ALA A 69 GLU A 70 SER A 71 HOH A3048 SITE 2 AC5 7 HOH A3058 HOH A3068 LYS B 168 SITE 1 AC6 2 LEU A 169 LYS A 170 SITE 1 AC7 5 THR A 101 SER A 103 THR B 27 HOH B1072 SITE 2 AC7 5 HOH B1143 SITE 1 AC8 4 PRO B 75 ALA B 76 ASN B 78 HOH B1159 SITE 1 AC9 6 HIS A 162 ASN B 91 SER B 93 GLU B 95 SITE 2 AC9 6 TRP B 96 ARG B 99 SITE 1 BC1 6 ALA B 69 GLU B 70 SER B 71 HOH B1025 SITE 2 BC1 6 HOH B1034 HOH B1141 SITE 1 BC2 4 GLN B 58 ARG B 177 HOH B1119 HOH B1138 SITE 1 BC3 4 GLU A 115 VAL B 39 ALA B 40 HOH B1182 SITE 1 BC4 20 LYS A 13 HIS A 20 GLU A 24 LEU A 33 SITE 2 BC4 20 ARG A 117 TYR A 130 VAL A 131 GLY A 135 SITE 3 BC4 20 SER A 138 VAL A 142 LYS A 173 ARG A 177 SITE 4 BC4 20 PHE A 201 ASN A 204 PHE A 208 SO4 A1004 SITE 5 BC4 20 HOH A3005 HOH A3017 HOH A3107 HOH A3138 SITE 1 BC5 14 LYS B 13 HIS B 20 GLN B 58 TYR B 130 SITE 2 BC5 14 VAL B 131 GLY B 135 SER B 138 ARG B 177 SITE 3 BC5 14 PHE B 201 PHE B 208 HOH B1032 HOH B1059 SITE 4 BC5 14 HOH B1091 HOH B1196 CRYST1 106.151 63.722 79.296 90.00 130.28 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009421 0.000000 0.007984 0.00000 SCALE2 0.000000 0.015693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016531 0.00000