HEADER LYASE 12-AUG-04 1WO8 TITLE CRYSTAL STRUCTURE OF METHYLGLYOXAL SYNTHASE FROM THERMUS THERMOPHILUS TITLE 2 HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLGLYOXAL SYNTHASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 4.2.3.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS METHYLGLYOXAL SYNTHASE, THERMUS THERMOPHILUS HB8, STRUCTURAL KEYWDS 2 GENOMICS, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 3 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SUGAHARA,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 13-MAR-24 1WO8 1 REMARK REVDAT 2 24-FEB-09 1WO8 1 VERSN REVDAT 1 23-AUG-05 1WO8 0 JRNL AUTH M.SUGAHARA,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF METHYLGLYOXAL SYNTHASE FROM THERMUS JRNL TITL 2 THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 104336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5144 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 510 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5506 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 816 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : -1.14000 REMARK 3 B33 (A**2) : 2.29000 REMARK 3 B12 (A**2) : -0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-04; 27-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : SPRING-8; ROTATING ANODE REMARK 200 BEAMLINE : BL26B1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 1.54178 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V; RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104491 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : 0.40500 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, PH 4.6, MICROBATCH, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.21767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.43533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.43533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.21767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER(CHAIN A,B,C,D,E,F) IN REMARK 300 THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -199.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -410.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 32.21767 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C1101 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1102 LIES ON A SPECIAL POSITION. REMARK 375 HOH E1121 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 124 REMARK 465 PRO B 125 REMARK 465 GLN B 126 REMARK 465 THR C 124 REMARK 465 PRO C 125 REMARK 465 GLN C 126 REMARK 465 THR D 124 REMARK 465 PRO D 125 REMARK 465 GLN D 126 REMARK 465 MET E 1 REMARK 465 THR E 124 REMARK 465 PRO E 125 REMARK 465 GLN E 126 REMARK 465 THR F 124 REMARK 465 PRO F 125 REMARK 465 GLN F 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP F 119 NE1 TRP F 119 CE2 0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 99 N - CA - CB ANGL. DEV. = 15.6 DEGREES REMARK 500 LYS D 122 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 53 -168.61 -105.18 REMARK 500 VAL B 53 -169.08 -112.83 REMARK 500 VAL C 53 -159.61 -95.95 REMARK 500 VAL D 53 -167.59 -105.76 REMARK 500 VAL E 53 -167.09 -103.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG C 67 -10.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000488.1 RELATED DB: TARGETDB DBREF 1WO8 A 1 126 UNP Q5SHD6 Q5SHD6_THET8 1 126 DBREF 1WO8 B 1 126 UNP Q5SHD6 Q5SHD6_THET8 1 126 DBREF 1WO8 C 1 126 UNP Q5SHD6 Q5SHD6_THET8 1 126 DBREF 1WO8 D 1 126 UNP Q5SHD6 Q5SHD6_THET8 1 126 DBREF 1WO8 E 1 126 UNP Q5SHD6 Q5SHD6_THET8 1 126 DBREF 1WO8 F 1 126 UNP Q5SHD6 Q5SHD6_THET8 1 126 SEQRES 1 A 126 MET LYS ALA LEU ALA LEU ILE ALA HIS ASP ALA LYS LYS SEQRES 2 A 126 ASP GLU MET VAL ALA PHE CYS LEU ARG HIS LYS ASP VAL SEQRES 3 A 126 LEU ALA ARG TYR PRO LEU LEU ALA THR GLY THR THR GLY SEQRES 4 A 126 ALA ARG ILE GLN GLU ALA THR GLY LEU ALA VAL GLU ARG SEQRES 5 A 126 VAL LEU SER GLY PRO LEU GLY GLY ASP LEU GLN ILE GLY SEQRES 6 A 126 ALA ARG VAL ALA GLU GLY LYS VAL LEU ALA VAL VAL PHE SEQRES 7 A 126 LEU GLN ASP PRO LEU THR ALA LYS PRO HIS GLU PRO ASP SEQRES 8 A 126 VAL GLN ALA LEU MET ARG VAL CYS ASN VAL HIS GLY VAL SEQRES 9 A 126 PRO LEU ALA THR ASN LEU VAL ALA ALA GLU ALA LEU ILE SEQRES 10 A 126 ALA TRP ILE ARG LYS GLY THR PRO GLN SEQRES 1 B 126 MET LYS ALA LEU ALA LEU ILE ALA HIS ASP ALA LYS LYS SEQRES 2 B 126 ASP GLU MET VAL ALA PHE CYS LEU ARG HIS LYS ASP VAL SEQRES 3 B 126 LEU ALA ARG TYR PRO LEU LEU ALA THR GLY THR THR GLY SEQRES 4 B 126 ALA ARG ILE GLN GLU ALA THR GLY LEU ALA VAL GLU ARG SEQRES 5 B 126 VAL LEU SER GLY PRO LEU GLY GLY ASP LEU GLN ILE GLY SEQRES 6 B 126 ALA ARG VAL ALA GLU GLY LYS VAL LEU ALA VAL VAL PHE SEQRES 7 B 126 LEU GLN ASP PRO LEU THR ALA LYS PRO HIS GLU PRO ASP SEQRES 8 B 126 VAL GLN ALA LEU MET ARG VAL CYS ASN VAL HIS GLY VAL SEQRES 9 B 126 PRO LEU ALA THR ASN LEU VAL ALA ALA GLU ALA LEU ILE SEQRES 10 B 126 ALA TRP ILE ARG LYS GLY THR PRO GLN SEQRES 1 C 126 MET LYS ALA LEU ALA LEU ILE ALA HIS ASP ALA LYS LYS SEQRES 2 C 126 ASP GLU MET VAL ALA PHE CYS LEU ARG HIS LYS ASP VAL SEQRES 3 C 126 LEU ALA ARG TYR PRO LEU LEU ALA THR GLY THR THR GLY SEQRES 4 C 126 ALA ARG ILE GLN GLU ALA THR GLY LEU ALA VAL GLU ARG SEQRES 5 C 126 VAL LEU SER GLY PRO LEU GLY GLY ASP LEU GLN ILE GLY SEQRES 6 C 126 ALA ARG VAL ALA GLU GLY LYS VAL LEU ALA VAL VAL PHE SEQRES 7 C 126 LEU GLN ASP PRO LEU THR ALA LYS PRO HIS GLU PRO ASP SEQRES 8 C 126 VAL GLN ALA LEU MET ARG VAL CYS ASN VAL HIS GLY VAL SEQRES 9 C 126 PRO LEU ALA THR ASN LEU VAL ALA ALA GLU ALA LEU ILE SEQRES 10 C 126 ALA TRP ILE ARG LYS GLY THR PRO GLN SEQRES 1 D 126 MET LYS ALA LEU ALA LEU ILE ALA HIS ASP ALA LYS LYS SEQRES 2 D 126 ASP GLU MET VAL ALA PHE CYS LEU ARG HIS LYS ASP VAL SEQRES 3 D 126 LEU ALA ARG TYR PRO LEU LEU ALA THR GLY THR THR GLY SEQRES 4 D 126 ALA ARG ILE GLN GLU ALA THR GLY LEU ALA VAL GLU ARG SEQRES 5 D 126 VAL LEU SER GLY PRO LEU GLY GLY ASP LEU GLN ILE GLY SEQRES 6 D 126 ALA ARG VAL ALA GLU GLY LYS VAL LEU ALA VAL VAL PHE SEQRES 7 D 126 LEU GLN ASP PRO LEU THR ALA LYS PRO HIS GLU PRO ASP SEQRES 8 D 126 VAL GLN ALA LEU MET ARG VAL CYS ASN VAL HIS GLY VAL SEQRES 9 D 126 PRO LEU ALA THR ASN LEU VAL ALA ALA GLU ALA LEU ILE SEQRES 10 D 126 ALA TRP ILE ARG LYS GLY THR PRO GLN SEQRES 1 E 126 MET LYS ALA LEU ALA LEU ILE ALA HIS ASP ALA LYS LYS SEQRES 2 E 126 ASP GLU MET VAL ALA PHE CYS LEU ARG HIS LYS ASP VAL SEQRES 3 E 126 LEU ALA ARG TYR PRO LEU LEU ALA THR GLY THR THR GLY SEQRES 4 E 126 ALA ARG ILE GLN GLU ALA THR GLY LEU ALA VAL GLU ARG SEQRES 5 E 126 VAL LEU SER GLY PRO LEU GLY GLY ASP LEU GLN ILE GLY SEQRES 6 E 126 ALA ARG VAL ALA GLU GLY LYS VAL LEU ALA VAL VAL PHE SEQRES 7 E 126 LEU GLN ASP PRO LEU THR ALA LYS PRO HIS GLU PRO ASP SEQRES 8 E 126 VAL GLN ALA LEU MET ARG VAL CYS ASN VAL HIS GLY VAL SEQRES 9 E 126 PRO LEU ALA THR ASN LEU VAL ALA ALA GLU ALA LEU ILE SEQRES 10 E 126 ALA TRP ILE ARG LYS GLY THR PRO GLN SEQRES 1 F 126 MET LYS ALA LEU ALA LEU ILE ALA HIS ASP ALA LYS LYS SEQRES 2 F 126 ASP GLU MET VAL ALA PHE CYS LEU ARG HIS LYS ASP VAL SEQRES 3 F 126 LEU ALA ARG TYR PRO LEU LEU ALA THR GLY THR THR GLY SEQRES 4 F 126 ALA ARG ILE GLN GLU ALA THR GLY LEU ALA VAL GLU ARG SEQRES 5 F 126 VAL LEU SER GLY PRO LEU GLY GLY ASP LEU GLN ILE GLY SEQRES 6 F 126 ALA ARG VAL ALA GLU GLY LYS VAL LEU ALA VAL VAL PHE SEQRES 7 F 126 LEU GLN ASP PRO LEU THR ALA LYS PRO HIS GLU PRO ASP SEQRES 8 F 126 VAL GLN ALA LEU MET ARG VAL CYS ASN VAL HIS GLY VAL SEQRES 9 F 126 PRO LEU ALA THR ASN LEU VAL ALA ALA GLU ALA LEU ILE SEQRES 10 F 126 ALA TRP ILE ARG LYS GLY THR PRO GLN HET SO4 A1001 5 HET SO4 B1002 5 HET SO4 C1003 5 HET SO4 D1004 5 HET SO4 D1007 5 HET SO4 E1005 5 HET SO4 F1006 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 7(O4 S 2-) FORMUL 14 HOH *816(H2 O) HELIX 1 1 LYS A 12 HIS A 23 1 12 HELIX 2 2 HIS A 23 ALA A 28 1 6 HELIX 3 3 THR A 35 GLY A 47 1 13 HELIX 4 4 GLY A 59 GLU A 70 1 12 HELIX 5 5 HIS A 88 HIS A 102 1 15 HELIX 6 6 ASN A 109 GLY A 123 1 15 HELIX 7 7 LYS B 12 HIS B 23 1 12 HELIX 8 8 HIS B 23 ALA B 28 1 6 HELIX 9 9 THR B 35 GLY B 47 1 13 HELIX 10 10 GLY B 59 GLU B 70 1 12 HELIX 11 11 HIS B 88 HIS B 102 1 15 HELIX 12 12 ASN B 109 GLY B 123 1 15 HELIX 13 13 LYS C 12 HIS C 23 1 12 HELIX 14 14 HIS C 23 ALA C 28 1 6 HELIX 15 15 THR C 35 GLY C 47 1 13 HELIX 16 16 SER C 55 LEU C 58 5 4 HELIX 17 17 GLY C 59 GLU C 70 1 12 HELIX 18 18 HIS C 88 HIS C 102 1 15 HELIX 19 19 ASN C 109 GLY C 123 1 15 HELIX 20 20 LYS D 12 HIS D 23 1 12 HELIX 21 21 HIS D 23 ALA D 28 1 6 HELIX 22 22 THR D 35 GLY D 47 1 13 HELIX 23 23 GLY D 59 GLU D 70 1 12 HELIX 24 24 HIS D 88 HIS D 102 1 15 HELIX 25 25 ASN D 109 LYS D 122 1 14 HELIX 26 26 LYS E 12 HIS E 23 1 12 HELIX 27 27 HIS E 23 ALA E 28 1 6 HELIX 28 28 THR E 35 GLY E 47 1 13 HELIX 29 29 GLY E 59 GLU E 70 1 12 HELIX 30 30 HIS E 88 HIS E 102 1 15 HELIX 31 31 ASN E 109 GLY E 123 1 15 HELIX 32 32 LYS F 12 HIS F 23 1 12 HELIX 33 33 HIS F 23 ALA F 28 1 6 HELIX 34 34 GLY F 36 GLY F 47 1 12 HELIX 35 35 GLY F 59 GLY F 71 1 13 HELIX 36 36 HIS F 88 HIS F 102 1 15 HELIX 37 37 ASN F 109 GLY F 123 1 15 SHEET 1 A 5 GLU A 51 ARG A 52 0 SHEET 2 A 5 LEU A 32 ALA A 34 1 N LEU A 32 O GLU A 51 SHEET 3 A 5 ALA A 3 ALA A 8 1 N LEU A 6 O LEU A 33 SHEET 4 A 5 VAL A 73 LEU A 79 1 O VAL A 77 N ILE A 7 SHEET 5 A 5 LEU A 106 ALA A 107 1 O ALA A 107 N PHE A 78 SHEET 1 B 5 VAL B 50 ARG B 52 0 SHEET 2 B 5 LEU B 32 ALA B 34 1 N LEU B 32 O GLU B 51 SHEET 3 B 5 ALA B 3 ALA B 8 1 N LEU B 6 O LEU B 33 SHEET 4 B 5 VAL B 73 LEU B 79 1 O VAL B 77 N ILE B 7 SHEET 5 B 5 LEU B 106 ALA B 107 1 O ALA B 107 N PHE B 78 SHEET 1 C 5 GLU C 51 ARG C 52 0 SHEET 2 C 5 LEU C 32 ALA C 34 1 N LEU C 32 O GLU C 51 SHEET 3 C 5 ALA C 3 ALA C 8 1 N LEU C 6 O LEU C 33 SHEET 4 C 5 VAL C 73 LEU C 79 1 O VAL C 77 N ALA C 5 SHEET 5 C 5 LEU C 106 ALA C 107 1 O ALA C 107 N PHE C 78 SHEET 1 D 5 GLU D 51 ARG D 52 0 SHEET 2 D 5 LEU D 32 ALA D 34 1 N LEU D 32 O GLU D 51 SHEET 3 D 5 ALA D 3 ALA D 8 1 N LEU D 6 O LEU D 33 SHEET 4 D 5 VAL D 73 LEU D 79 1 O VAL D 77 N ALA D 5 SHEET 5 D 5 LEU D 106 ALA D 107 1 O ALA D 107 N PHE D 78 SHEET 1 E 5 GLU E 51 ARG E 52 0 SHEET 2 E 5 LEU E 32 ALA E 34 1 N LEU E 32 O GLU E 51 SHEET 3 E 5 ALA E 3 ALA E 8 1 N LEU E 6 O LEU E 33 SHEET 4 E 5 VAL E 73 LEU E 79 1 O LEU E 74 N ALA E 3 SHEET 5 E 5 LEU E 106 ALA E 107 1 O ALA E 107 N PHE E 78 SHEET 1 F 5 GLU F 51 VAL F 53 0 SHEET 2 F 5 LEU F 32 THR F 35 1 N LEU F 32 O GLU F 51 SHEET 3 F 5 ALA F 3 ALA F 8 1 N LEU F 6 O LEU F 33 SHEET 4 F 5 VAL F 73 LEU F 79 1 O VAL F 77 N ALA F 5 SHEET 5 F 5 LEU F 106 ALA F 107 1 O ALA F 107 N PHE F 78 SITE 1 AC1 9 LYS A 13 THR A 35 THR A 37 THR A 38 SITE 2 AC1 9 SER A 55 GLY A 56 HOH A1061 HOH A1073 SITE 3 AC1 9 HOH A1143 SITE 1 AC2 10 LYS B 13 THR B 35 GLY B 36 THR B 37 SITE 2 AC2 10 THR B 38 SER B 55 GLY B 56 HOH B1066 SITE 3 AC2 10 HOH B1083 HOH B1118 SITE 1 AC3 9 LYS C 13 THR C 35 THR C 37 THR C 38 SITE 2 AC3 9 SER C 55 GLY C 56 HOH C1021 HOH C1062 SITE 3 AC3 9 HOH C1099 SITE 1 AC4 8 LYS D 13 THR D 35 THR D 37 THR D 38 SITE 2 AC4 8 SER D 55 GLY D 56 HOH D1111 HOH D1144 SITE 1 AC5 8 LYS E 13 THR E 35 THR E 37 THR E 38 SITE 2 AC5 8 SER E 55 GLY E 56 HOH E1037 HOH E1102 SITE 1 AC6 9 LYS F 13 THR F 35 GLY F 36 THR F 37 SITE 2 AC6 9 THR F 38 SER F 55 GLY F 56 HOH F1077 SITE 3 AC6 9 HOH F1083 SITE 1 AC7 4 GLN D 43 ARG D 52 HOH D1028 HOH D1131 CRYST1 130.612 130.612 96.653 90.00 90.00 120.00 P 31 2 1 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007656 0.004420 0.000000 0.00000 SCALE2 0.000000 0.008841 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010346 0.00000