data_1WOT # _entry.id 1WOT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WOT pdb_00001wot 10.2210/pdb1wot/pdb RCSB RCSB023826 ? ? WWPDB D_1000023826 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2004-09-07 _pdbx_database_PDB_obs_spr.pdb_id 1WOT _pdbx_database_PDB_obs_spr.replace_pdb_id 1J0L _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1J0L ;The coordinates in this entry 1WOT are essentially the same as those in the entry 1J0L, except that the ensemble of NMR models in 1J0L was not superimposed by mistake. ; unspecified TargetDB ttk003001464.1 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WOT _pdbx_database_status.recvd_initial_deposition_date 2004-08-25 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, S.' 1 'Hatanaka, H.' 2 'Hondoh, T.' 3 'Okumura, A.' 4 'Kuroda, Y.' 5 'Kuramitsu, S.' 6 'Shibata, T.' 7 'Inoue, Y.' 8 'Yokoyama, S.' 9 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 10 # _citation.id primary _citation.title 'Structure of Putative Minimal Nucleotidyltransferase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, S.' 1 ? primary 'Hatanaka, H.' 2 ? primary 'Hondoh, T.' 3 ? primary 'Okumura, A.' 4 ? primary 'Kuroda, Y.' 5 ? primary 'Kuramitsu, S.' 6 ? primary 'Shibata, T.' 7 ? primary 'Inoue, Y.' 8 ? primary 'Yokoyama, S.' 9 ? # _cell.entry_id 1WOT _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WOT _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'PUTATIVE MINIMAL NUCLEOTIDYLTRANSFERASE' _entity.formula_weight 10882.579 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMDLETLRARREAVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLLDHARLKLALEGLLGVRVDIVSE RGLAPRLREQVLREAIPL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMDLETLRARREAVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLLDHARLKLALEGLLGVRVDIVSE RGLAPRLREQVLREAIPL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003001464.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASP n 1 6 LEU n 1 7 GLU n 1 8 THR n 1 9 LEU n 1 10 ARG n 1 11 ALA n 1 12 ARG n 1 13 ARG n 1 14 GLU n 1 15 ALA n 1 16 VAL n 1 17 LEU n 1 18 SER n 1 19 LEU n 1 20 CYS n 1 21 ALA n 1 22 ARG n 1 23 HIS n 1 24 GLY n 1 25 ALA n 1 26 VAL n 1 27 ARG n 1 28 VAL n 1 29 ARG n 1 30 VAL n 1 31 PHE n 1 32 GLY n 1 33 SER n 1 34 VAL n 1 35 ALA n 1 36 ARG n 1 37 GLY n 1 38 GLU n 1 39 ALA n 1 40 ARG n 1 41 GLU n 1 42 ASP n 1 43 SER n 1 44 ASP n 1 45 LEU n 1 46 ASP n 1 47 LEU n 1 48 LEU n 1 49 VAL n 1 50 ALA n 1 51 PHE n 1 52 GLU n 1 53 GLU n 1 54 GLY n 1 55 ARG n 1 56 THR n 1 57 LEU n 1 58 LEU n 1 59 ASP n 1 60 HIS n 1 61 ALA n 1 62 ARG n 1 63 LEU n 1 64 LYS n 1 65 LEU n 1 66 ALA n 1 67 LEU n 1 68 GLU n 1 69 GLY n 1 70 LEU n 1 71 LEU n 1 72 GLY n 1 73 VAL n 1 74 ARG n 1 75 VAL n 1 76 ASP n 1 77 ILE n 1 78 VAL n 1 79 SER n 1 80 GLU n 1 81 ARG n 1 82 GLY n 1 83 LEU n 1 84 ALA n 1 85 PRO n 1 86 ARG n 1 87 LEU n 1 88 ARG n 1 89 GLU n 1 90 GLN n 1 91 VAL n 1 92 LEU n 1 93 ARG n 1 94 GLU n 1 95 ALA n 1 96 ILE n 1 97 PRO n 1 98 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code P83814_THETH _struct_ref.pdbx_db_accession P83814 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WOT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 98 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P83814 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 95 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 95 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-SEPARATED_NOESY 1 2 1 '3D_ 15N-SEPARATED_NOESY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.12 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20MM NAPI, 100MM NACL' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 600 ? 2 INOVA Varian 800 ? # _pdbx_nmr_refine.entry_id 1WOT _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1WOT _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY.' # _pdbx_nmr_ensemble.entry_id 1WOT _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WOT _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CYANA 1.0.7 'GUNTERT, P.' 1 'structure solution' NMRPipe 2.1 'Delaglio, F.' 2 'structure solution' VNMR 6.1B Varian 3 'structure solution' CYANA 1.0.7 'Guntert, P.' 4 # _exptl.entry_id 1WOT _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1WOT _struct.title 'Structure of putative minimal nucleotidyltransferase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WOT _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'ALPHA AND BETA, STRUCTURAL GENOMICS, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 5 ? GLY A 24 ? ASP A 2 GLY A 21 1 ? 20 HELX_P HELX_P2 2 GLY A 32 ? GLY A 37 ? GLY A 29 GLY A 34 1 ? 6 HELX_P HELX_P3 3 THR A 56 ? GLY A 72 ? THR A 53 GLY A 69 1 ? 17 HELX_P HELX_P4 4 ALA A 84 ? ALA A 95 ? ALA A 81 ALA A 92 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 75 ? SER A 79 ? VAL A 72 SER A 76 A 2 LEU A 45 ? ALA A 50 ? LEU A 42 ALA A 47 A 3 ARG A 27 ? VAL A 30 ? ARG A 24 VAL A 27 A 4 ILE A 96 ? PRO A 97 ? ILE A 93 PRO A 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 76 ? O ASP A 73 N LEU A 45 ? N LEU A 42 A 2 3 O LEU A 48 ? O LEU A 45 N ARG A 29 ? N ARG A 26 A 3 4 N VAL A 30 ? N VAL A 27 O ILE A 96 ? O ILE A 93 # _database_PDB_matrix.entry_id 1WOT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WOT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -2 GLY GLY A . n A 1 2 SER 2 -1 -1 SER SER A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 ASP 5 2 2 ASP ASP A . n A 1 6 LEU 6 3 3 LEU LEU A . n A 1 7 GLU 7 4 4 GLU GLU A . n A 1 8 THR 8 5 5 THR THR A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 ARG 10 7 7 ARG ARG A . n A 1 11 ALA 11 8 8 ALA ALA A . n A 1 12 ARG 12 9 9 ARG ARG A . n A 1 13 ARG 13 10 10 ARG ARG A . n A 1 14 GLU 14 11 11 GLU GLU A . n A 1 15 ALA 15 12 12 ALA ALA A . n A 1 16 VAL 16 13 13 VAL VAL A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 SER 18 15 15 SER SER A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 CYS 20 17 17 CYS CYS A . n A 1 21 ALA 21 18 18 ALA ALA A . n A 1 22 ARG 22 19 19 ARG ARG A . n A 1 23 HIS 23 20 20 HIS HIS A . n A 1 24 GLY 24 21 21 GLY GLY A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 VAL 26 23 23 VAL VAL A . n A 1 27 ARG 27 24 24 ARG ARG A . n A 1 28 VAL 28 25 25 VAL VAL A . n A 1 29 ARG 29 26 26 ARG ARG A . n A 1 30 VAL 30 27 27 VAL VAL A . n A 1 31 PHE 31 28 28 PHE PHE A . n A 1 32 GLY 32 29 29 GLY GLY A . n A 1 33 SER 33 30 30 SER SER A . n A 1 34 VAL 34 31 31 VAL VAL A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 ARG 36 33 33 ARG ARG A . n A 1 37 GLY 37 34 34 GLY GLY A . n A 1 38 GLU 38 35 35 GLU GLU A . n A 1 39 ALA 39 36 36 ALA ALA A . n A 1 40 ARG 40 37 37 ARG ARG A . n A 1 41 GLU 41 38 38 GLU GLU A . n A 1 42 ASP 42 39 39 ASP ASP A . n A 1 43 SER 43 40 40 SER SER A . n A 1 44 ASP 44 41 41 ASP ASP A . n A 1 45 LEU 45 42 42 LEU LEU A . n A 1 46 ASP 46 43 43 ASP ASP A . n A 1 47 LEU 47 44 44 LEU LEU A . n A 1 48 LEU 48 45 45 LEU LEU A . n A 1 49 VAL 49 46 46 VAL VAL A . n A 1 50 ALA 50 47 47 ALA ALA A . n A 1 51 PHE 51 48 48 PHE PHE A . n A 1 52 GLU 52 49 49 GLU GLU A . n A 1 53 GLU 53 50 50 GLU GLU A . n A 1 54 GLY 54 51 51 GLY GLY A . n A 1 55 ARG 55 52 52 ARG ARG A . n A 1 56 THR 56 53 53 THR THR A . n A 1 57 LEU 57 54 54 LEU LEU A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 ASP 59 56 56 ASP ASP A . n A 1 60 HIS 60 57 57 HIS HIS A . n A 1 61 ALA 61 58 58 ALA ALA A . n A 1 62 ARG 62 59 59 ARG ARG A . n A 1 63 LEU 63 60 60 LEU LEU A . n A 1 64 LYS 64 61 61 LYS LYS A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 ALA 66 63 63 ALA ALA A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 GLU 68 65 65 GLU GLU A . n A 1 69 GLY 69 66 66 GLY GLY A . n A 1 70 LEU 70 67 67 LEU LEU A . n A 1 71 LEU 71 68 68 LEU LEU A . n A 1 72 GLY 72 69 69 GLY GLY A . n A 1 73 VAL 73 70 70 VAL VAL A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 VAL 75 72 72 VAL VAL A . n A 1 76 ASP 76 73 73 ASP ASP A . n A 1 77 ILE 77 74 74 ILE ILE A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 SER 79 76 76 SER SER A . n A 1 80 GLU 80 77 77 GLU GLU A . n A 1 81 ARG 81 78 78 ARG ARG A . n A 1 82 GLY 82 79 79 GLY GLY A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 ALA 84 81 81 ALA ALA A . n A 1 85 PRO 85 82 82 PRO PRO A . n A 1 86 ARG 86 83 83 ARG ARG A . n A 1 87 LEU 87 84 84 LEU LEU A . n A 1 88 ARG 88 85 85 ARG ARG A . n A 1 89 GLU 89 86 86 GLU GLU A . n A 1 90 GLN 90 87 87 GLN GLN A . n A 1 91 VAL 91 88 88 VAL VAL A . n A 1 92 LEU 92 89 89 LEU LEU A . n A 1 93 ARG 93 90 90 ARG ARG A . n A 1 94 GLU 94 91 91 GLU GLU A . n A 1 95 ALA 95 92 92 ALA ALA A . n A 1 96 ILE 96 93 93 ILE ILE A . n A 1 97 PRO 97 94 94 PRO PRO A . n A 1 98 LEU 98 95 95 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-07 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_exptl_sample_conditions 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_exptl_sample_conditions.pressure_units' 4 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ARG 9 ? ? H A VAL 13 ? ? 1.43 2 1 O A VAL 88 ? ? H A ALA 92 ? ? 1.54 3 1 O A LEU 6 ? ? H A ARG 10 ? ? 1.57 4 1 O A HIS 57 ? ? H A LYS 61 ? ? 1.57 5 1 O A VAL 13 ? ? H A CYS 17 ? ? 1.60 6 2 O A VAL 88 ? ? H A ALA 92 ? ? 1.50 7 2 O A LEU 64 ? ? H A LEU 68 ? ? 1.51 8 2 O A VAL 13 ? ? H A CYS 17 ? ? 1.55 9 2 O A LEU 84 ? ? H A VAL 88 ? ? 1.60 10 3 O A VAL 88 ? ? H A ALA 92 ? ? 1.51 11 3 O A VAL 13 ? ? H A CYS 17 ? ? 1.59 12 4 O A VAL 13 ? ? H A CYS 17 ? ? 1.47 13 4 O A VAL 88 ? ? H A ALA 92 ? ? 1.50 14 4 O A LEU 64 ? ? H A LEU 68 ? ? 1.55 15 5 O A VAL 13 ? ? H A CYS 17 ? ? 1.45 16 5 O A ARG 9 ? ? H A VAL 13 ? ? 1.56 17 6 O A VAL 88 ? ? H A ALA 92 ? ? 1.48 18 6 O A LEU 54 ? ? H A ALA 58 ? ? 1.49 19 6 O A ARG 9 ? ? H A VAL 13 ? ? 1.56 20 6 O A LEU 84 ? ? H A VAL 88 ? ? 1.57 21 7 O A VAL 13 ? ? H A CYS 17 ? ? 1.49 22 7 O A ARG 59 ? ? H A ALA 63 ? ? 1.54 23 7 O A VAL 31 ? ? H A GLY 34 ? ? 1.57 24 7 O A GLY 21 ? ? H A GLU 49 ? ? 1.59 25 7 O A VAL 88 ? ? H A ALA 92 ? ? 1.59 26 8 O A VAL 88 ? ? H A ALA 92 ? ? 1.47 27 8 O A ARG 9 ? ? H A VAL 13 ? ? 1.55 28 8 O A VAL 13 ? ? H A CYS 17 ? ? 1.58 29 9 O A VAL 88 ? ? H A ALA 92 ? ? 1.46 30 9 O A LEU 44 ? ? H A VAL 75 ? ? 1.57 31 9 O A LEU 16 ? ? H A HIS 20 ? ? 1.58 32 9 O A CYS 17 ? ? H A ALA 22 ? ? 1.60 33 10 O A VAL 88 ? ? H A ALA 92 ? ? 1.48 34 10 O A VAL 13 ? ? H A CYS 17 ? ? 1.49 35 10 O A ARG 9 ? ? H A VAL 13 ? ? 1.55 36 10 O A GLY 21 ? ? H A GLU 49 ? ? 1.59 37 11 O A GLY 21 ? ? H A GLU 49 ? ? 1.48 38 11 O A VAL 88 ? ? H A ALA 92 ? ? 1.53 39 11 O A ARG 9 ? ? H A VAL 13 ? ? 1.55 40 11 O A LYS 61 ? ? H A GLU 65 ? ? 1.58 41 11 O A VAL 13 ? ? H A CYS 17 ? ? 1.59 42 11 O A LEU 6 ? ? H A ARG 10 ? ? 1.60 43 12 O A VAL 13 ? ? H A CYS 17 ? ? 1.44 44 12 O A ARG 9 ? ? H A VAL 13 ? ? 1.45 45 12 O A VAL 88 ? ? H A ALA 92 ? ? 1.46 46 12 O A LEU 64 ? ? H A LEU 68 ? ? 1.53 47 12 O A LEU 84 ? ? H A VAL 88 ? ? 1.56 48 13 O A VAL 13 ? ? H A CYS 17 ? ? 1.43 49 13 O A VAL 88 ? ? H A ALA 92 ? ? 1.46 50 13 O A ARG 9 ? ? H A VAL 13 ? ? 1.59 51 14 O A VAL 13 ? ? H A CYS 17 ? ? 1.54 52 14 O A VAL 88 ? ? H A ALA 92 ? ? 1.55 53 15 O A VAL 13 ? ? H A CYS 17 ? ? 1.43 54 15 O A ARG 9 ? ? H A VAL 13 ? ? 1.47 55 15 O A ARG 85 ? ? H A LEU 89 ? ? 1.49 56 15 O A ARG 59 ? ? H A ALA 63 ? ? 1.50 57 15 O A LEU 6 ? ? H A ARG 10 ? ? 1.52 58 15 O A ASP 56 ? ? H A LEU 60 ? ? 1.53 59 15 O A VAL 31 ? ? H A GLY 34 ? ? 1.58 60 16 O A VAL 13 ? ? H A CYS 17 ? ? 1.41 61 16 O A VAL 88 ? ? H A ALA 92 ? ? 1.46 62 16 O A ARG 9 ? ? H A VAL 13 ? ? 1.50 63 16 O A ARG 10 ? ? H A LEU 14 ? ? 1.58 64 16 H A ARG 37 ? ? OG A SER 40 ? ? 1.58 65 16 O A LEU 84 ? ? H A VAL 88 ? ? 1.58 66 17 O A VAL 88 ? ? H A ALA 92 ? ? 1.48 67 17 O A ARG 9 ? ? H A VAL 13 ? ? 1.49 68 17 O A LEU 6 ? ? H A ARG 10 ? ? 1.50 69 17 O A VAL 13 ? ? H A CYS 17 ? ? 1.52 70 17 O A LEU 84 ? ? H A VAL 88 ? ? 1.58 71 18 O A LEU 84 ? ? H A VAL 88 ? ? 1.49 72 18 O A ARG 85 ? ? H A LEU 89 ? ? 1.50 73 18 O A THR 5 ? ? H A ARG 9 ? ? 1.55 74 18 O A LEU 60 ? ? H A LEU 64 ? ? 1.59 75 19 O A VAL 13 ? ? H A CYS 17 ? ? 1.44 76 19 O A ASP 56 ? ? H A LEU 60 ? ? 1.48 77 19 O A LEU 64 ? ? H A LEU 68 ? ? 1.48 78 19 O A VAL 88 ? ? H A ALA 92 ? ? 1.53 79 19 O A ARG 9 ? ? H A VAL 13 ? ? 1.56 80 19 O A VAL 31 ? ? H A GLY 34 ? ? 1.57 81 19 O A ARG 10 ? ? H A LEU 14 ? ? 1.58 82 20 O A ARG 9 ? ? H A VAL 13 ? ? 1.30 83 20 O A VAL 88 ? ? H A ALA 92 ? ? 1.51 84 20 O A LEU 6 ? ? H A ARG 10 ? ? 1.56 85 20 O A VAL 13 ? ? H A CYS 17 ? ? 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A -1 ? ? 68.80 154.47 2 1 HIS A 0 ? ? 90.21 7.63 3 1 ALA A 36 ? ? 169.76 114.59 4 1 GLU A 49 ? ? -66.82 -155.70 5 1 ARG A 78 ? ? -58.88 -73.60 6 1 LEU A 80 ? ? -55.40 -175.66 7 2 HIS A 0 ? ? -173.10 98.34 8 2 MET A 1 ? ? -176.37 86.96 9 2 ALA A 36 ? ? -175.68 105.95 10 2 ARG A 37 ? ? -40.58 160.05 11 2 ARG A 71 ? ? -38.75 140.18 12 2 LEU A 80 ? ? -55.73 178.87 13 3 HIS A 0 ? ? -171.76 137.96 14 3 ALA A 36 ? ? 170.66 91.62 15 3 ARG A 37 ? ? -52.06 -174.80 16 3 GLU A 49 ? ? -65.59 -174.38 17 4 HIS A 0 ? ? -148.50 19.92 18 4 ALA A 36 ? ? 169.69 109.65 19 4 ARG A 37 ? ? -59.87 -172.31 20 4 GLU A 49 ? ? -53.71 -171.35 21 4 ALA A 92 ? ? -39.75 158.09 22 5 MET A 1 ? ? 54.49 97.48 23 5 ARG A 24 ? ? -83.34 49.64 24 5 ALA A 36 ? ? -175.64 111.14 25 5 ARG A 37 ? ? -40.81 160.64 26 5 GLU A 49 ? ? -61.18 -172.22 27 5 GLU A 77 ? ? -38.40 -30.16 28 6 SER A -1 ? ? 40.54 79.97 29 6 HIS A 0 ? ? -178.04 137.30 30 6 GLU A 49 ? ? -61.69 -156.72 31 7 SER A -1 ? ? 39.41 86.63 32 7 HIS A 0 ? ? -175.40 133.05 33 7 MET A 1 ? ? -178.38 111.31 34 7 VAL A 23 ? ? -139.03 -47.84 35 7 ARG A 24 ? ? -69.31 58.64 36 7 ALA A 36 ? ? 169.34 104.31 37 7 ARG A 37 ? ? -63.25 -166.12 38 7 ASP A 39 ? ? -151.30 22.14 39 7 GLU A 49 ? ? -79.63 -143.75 40 7 LEU A 80 ? ? -56.29 172.64 41 8 SER A -1 ? ? 44.72 76.76 42 8 HIS A 0 ? ? -171.23 130.70 43 8 MET A 1 ? ? 165.96 105.17 44 8 ALA A 36 ? ? 162.32 161.32 45 8 ASP A 41 ? ? 52.07 173.46 46 8 GLU A 49 ? ? -63.02 -168.16 47 8 LEU A 80 ? ? -62.31 -177.74 48 9 SER A -1 ? ? 54.54 83.56 49 9 HIS A 0 ? ? -172.53 119.86 50 9 ALA A 36 ? ? 162.07 109.07 51 9 ARG A 37 ? ? -68.63 -172.98 52 9 GLU A 49 ? ? -55.39 -173.54 53 9 LEU A 80 ? ? -62.61 -175.16 54 10 SER A -1 ? ? -151.36 89.01 55 10 VAL A 23 ? ? -130.08 -49.88 56 10 ALA A 36 ? ? -177.57 81.68 57 10 ARG A 37 ? ? -49.90 178.58 58 10 GLU A 50 ? ? 71.98 -146.39 59 10 ALA A 92 ? ? -39.26 130.63 60 11 SER A -1 ? ? -59.01 102.50 61 11 MET A 1 ? ? 162.49 132.10 62 11 ALA A 22 ? ? -47.62 156.46 63 11 ARG A 24 ? ? 84.58 -51.45 64 11 VAL A 25 ? ? 56.22 106.33 65 11 ALA A 36 ? ? 173.42 106.52 66 11 ARG A 37 ? ? -54.91 177.60 67 11 GLU A 49 ? ? -100.01 -162.10 68 11 GLU A 50 ? ? 49.70 -150.24 69 12 SER A -1 ? ? -64.39 83.15 70 12 HIS A 0 ? ? -170.93 132.31 71 12 MET A 1 ? ? 168.93 97.55 72 12 ALA A 36 ? ? -175.42 86.43 73 12 GLU A 50 ? ? 38.01 -151.72 74 12 ARG A 71 ? ? -36.84 133.39 75 12 LEU A 80 ? ? -59.89 -178.35 76 13 HIS A 0 ? ? -171.00 100.82 77 13 ARG A 37 ? ? -40.59 161.20 78 13 GLU A 49 ? ? -54.39 -162.28 79 13 LEU A 80 ? ? -66.19 -175.52 80 14 HIS A 0 ? ? -145.85 18.52 81 14 ALA A 22 ? ? -43.67 158.84 82 14 VAL A 23 ? ? -147.03 -49.04 83 14 ARG A 24 ? ? -110.48 65.50 84 14 ALA A 36 ? ? -174.97 -165.90 85 14 ASP A 39 ? ? -110.29 62.63 86 14 GLU A 49 ? ? -58.13 -164.01 87 15 HIS A 0 ? ? -171.60 113.78 88 15 ASP A 2 ? ? 171.62 -179.06 89 15 VAL A 23 ? ? -133.36 -50.13 90 15 ALA A 36 ? ? 171.41 99.71 91 15 ARG A 37 ? ? -59.19 -173.68 92 15 GLU A 49 ? ? -84.92 -151.71 93 15 ALA A 81 ? ? -45.15 161.74 94 16 MET A 1 ? ? 64.12 144.10 95 16 ALA A 22 ? ? -156.76 89.76 96 16 ARG A 24 ? ? -91.28 54.25 97 16 ALA A 36 ? ? -175.39 148.61 98 16 GLU A 49 ? ? -93.96 -157.58 99 16 GLU A 50 ? ? 38.87 -147.39 100 16 LEU A 80 ? ? -62.81 -176.42 101 17 HIS A 0 ? ? -164.40 112.15 102 17 MET A 1 ? ? 170.76 122.52 103 17 ALA A 36 ? ? 175.45 125.43 104 17 GLU A 50 ? ? 42.15 -154.64 105 17 LEU A 80 ? ? -67.39 -175.51 106 17 ALA A 92 ? ? -39.06 115.37 107 18 SER A -1 ? ? -180.00 120.03 108 18 HIS A 0 ? ? 163.41 140.37 109 18 MET A 1 ? ? -178.19 99.86 110 18 VAL A 23 ? ? -120.45 -158.36 111 18 ARG A 24 ? ? 37.37 31.74 112 18 VAL A 25 ? ? -49.14 103.31 113 18 ALA A 36 ? ? 173.73 122.31 114 18 GLU A 49 ? ? -67.18 -162.34 115 18 LEU A 80 ? ? -60.54 -175.66 116 19 SER A -1 ? ? -67.13 84.52 117 19 HIS A 0 ? ? -173.08 30.39 118 19 MET A 1 ? ? -61.77 -171.70 119 19 ARG A 24 ? ? -90.65 52.80 120 19 ALA A 36 ? ? -160.31 94.17 121 19 ARG A 37 ? ? -39.99 158.56 122 19 GLU A 50 ? ? -36.81 133.04 123 20 HIS A 0 ? ? -160.14 110.46 124 20 ALA A 36 ? ? 170.08 93.28 125 20 ARG A 37 ? ? -62.73 -175.15 126 20 GLU A 49 ? ? -44.76 170.17 127 20 ARG A 71 ? ? -39.78 127.81 #