data_1WQ9 # _entry.id 1WQ9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1WQ9 RCSB RCSB023876 WWPDB D_1000023876 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1WQ8 _pdbx_database_related.details 'Vammin, a VEGF-F from a snake venom' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WQ9 _pdbx_database_status.recvd_initial_deposition_date 2004-09-24 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suto, K.' 1 'Yamazaki, Y.' 2 'Morita, T.' 3 'Mizuno, H.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Crystal structures of novel vascular endothelial growth factors (VEGF) from snake venoms: insight into selective VEGF binding to kinase insert domain-containing receptor but not to fms-like tyrosine kinase-1. ; J.Biol.Chem. 280 2126 2131 2005 JBCHA3 US 0021-9258 0071 ? 15542594 10.1074/jbc.M411395200 1 ;Snake venom vascular endothelial growth factors (VEGFs) exhibit potent activity through their specific recognition of KDR (VEGF receptor 2) ; J.Biol.Chem. 278 51985 51988 2003 JBCHA3 US 0021-9258 0071 ? 14600159 10.1074/jbc.C300454200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suto, K.' 1 ? primary 'Yamazaki, Y.' 2 ? primary 'Morita, T.' 3 ? primary 'Mizuno, H.' 4 ? 1 'Yamazaki, Y.' 5 ? 1 'Takani, K.' 6 ? 1 'Atoda, H.' 7 ? 1 'Morita, T.' 8 ? # _cell.entry_id 1WQ9 _cell.length_a 90.348 _cell.length_b 48.961 _cell.length_c 54.214 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WQ9 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Vascular endothelial growth factor' 10965.716 1 ? ? ? ? 2 polymer nat 'Vascular endothelial growth factor' 10947.701 1 ? ? ? ? 3 water nat water 18.015 143 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'VR-1, VEGF-F' 2 'VR-1, VEGF-F' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EVRPFLDVYQRSACQTRETLVSILQEHPDEISDIFRPSCVAVLRCSGCCTDESMKCTPVGKHTADIQIMRMNPRTHSSKM EVMKFMEHTACECRPA ; ;EVRPFLDVYQRSACQTRETLVSILQEHPDEISDIFRPSCVAVLRCSGCCTDESMKCTPVGKHTADIQIMRMNPRTHSSKM EVMKFMEHTACECRPA ; A ? 2 'polypeptide(L)' no yes ;(PCA)VRPFLDVYQRSACQTRETLVSILQEHPDEISDIFRPSCVAVLRCSGCCTDESMKCTPVGKHTADIQIMRMNPRTH SSKMEVMKFMEHTACECRPA ; ;QVRPFLDVYQRSACQTRETLVSILQEHPDEISDIFRPSCVAVLRCSGCCTDESMKCTPVGKHTADIQIMRMNPRTHSSKM EVMKFMEHTACECRPA ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 ARG n 1 4 PRO n 1 5 PHE n 1 6 LEU n 1 7 ASP n 1 8 VAL n 1 9 TYR n 1 10 GLN n 1 11 ARG n 1 12 SER n 1 13 ALA n 1 14 CYS n 1 15 GLN n 1 16 THR n 1 17 ARG n 1 18 GLU n 1 19 THR n 1 20 LEU n 1 21 VAL n 1 22 SER n 1 23 ILE n 1 24 LEU n 1 25 GLN n 1 26 GLU n 1 27 HIS n 1 28 PRO n 1 29 ASP n 1 30 GLU n 1 31 ILE n 1 32 SER n 1 33 ASP n 1 34 ILE n 1 35 PHE n 1 36 ARG n 1 37 PRO n 1 38 SER n 1 39 CYS n 1 40 VAL n 1 41 ALA n 1 42 VAL n 1 43 LEU n 1 44 ARG n 1 45 CYS n 1 46 SER n 1 47 GLY n 1 48 CYS n 1 49 CYS n 1 50 THR n 1 51 ASP n 1 52 GLU n 1 53 SER n 1 54 MET n 1 55 LYS n 1 56 CYS n 1 57 THR n 1 58 PRO n 1 59 VAL n 1 60 GLY n 1 61 LYS n 1 62 HIS n 1 63 THR n 1 64 ALA n 1 65 ASP n 1 66 ILE n 1 67 GLN n 1 68 ILE n 1 69 MET n 1 70 ARG n 1 71 MET n 1 72 ASN n 1 73 PRO n 1 74 ARG n 1 75 THR n 1 76 HIS n 1 77 SER n 1 78 SER n 1 79 LYS n 1 80 MET n 1 81 GLU n 1 82 VAL n 1 83 MET n 1 84 LYS n 1 85 PHE n 1 86 MET n 1 87 GLU n 1 88 HIS n 1 89 THR n 1 90 ALA n 1 91 CYS n 1 92 GLU n 1 93 CYS n 1 94 ARG n 1 95 PRO n 1 96 ALA n 2 1 PCA n 2 2 VAL n 2 3 ARG n 2 4 PRO n 2 5 PHE n 2 6 LEU n 2 7 ASP n 2 8 VAL n 2 9 TYR n 2 10 GLN n 2 11 ARG n 2 12 SER n 2 13 ALA n 2 14 CYS n 2 15 GLN n 2 16 THR n 2 17 ARG n 2 18 GLU n 2 19 THR n 2 20 LEU n 2 21 VAL n 2 22 SER n 2 23 ILE n 2 24 LEU n 2 25 GLN n 2 26 GLU n 2 27 HIS n 2 28 PRO n 2 29 ASP n 2 30 GLU n 2 31 ILE n 2 32 SER n 2 33 ASP n 2 34 ILE n 2 35 PHE n 2 36 ARG n 2 37 PRO n 2 38 SER n 2 39 CYS n 2 40 VAL n 2 41 ALA n 2 42 VAL n 2 43 LEU n 2 44 ARG n 2 45 CYS n 2 46 SER n 2 47 GLY n 2 48 CYS n 2 49 CYS n 2 50 THR n 2 51 ASP n 2 52 GLU n 2 53 SER n 2 54 MET n 2 55 LYS n 2 56 CYS n 2 57 THR n 2 58 PRO n 2 59 VAL n 2 60 GLY n 2 61 LYS n 2 62 HIS n 2 63 THR n 2 64 ALA n 2 65 ASP n 2 66 ILE n 2 67 GLN n 2 68 ILE n 2 69 MET n 2 70 ARG n 2 71 MET n 2 72 ASN n 2 73 PRO n 2 74 ARG n 2 75 THR n 2 76 HIS n 2 77 SER n 2 78 SER n 2 79 LYS n 2 80 MET n 2 81 GLU n 2 82 VAL n 2 83 MET n 2 84 LYS n 2 85 PHE n 2 86 MET n 2 87 GLU n 2 88 HIS n 2 89 THR n 2 90 ALA n 2 91 CYS n 2 92 GLU n 2 93 CYS n 2 94 ARG n 2 95 PRO n 2 96 ALA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'Daboia russellii russellii' 31159 Daboia 'Daboia russellii' russellii ? ? venom ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'Daboia russellii russellii' 31159 Daboia 'Daboia russellii' russellii ? ? venom ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 UNP TXVE_DABRR P67861 ? ? ? 2 2 UNP TXVE_DABRR P67861 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WQ9 A 2 ? 95 ? P67861 2 ? 95 ? 2 95 2 2 1WQ9 B 2 ? 95 ? P67861 2 ? 95 ? 2 95 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PCA 'L-peptide linking' n 'PYROGLUTAMIC ACID' ? 'C5 H7 N O3' 129.114 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1WQ9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG 6000, Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2003-11-06 ? 2 CCD 'ADSC QUANTUM 4' 2003-01-17 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'SILICON, GELMANIUM' 'SINGLE WAVELENGTH' x-ray 2 1 M SILICON MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.000 1.0 2 1.0722 1.0 3 1.0715 1.0 4 1.0925 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-18B' 'Photon Factory' BL-18B ? 1.000 2 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-6A' 'Photon Factory' BL-6A ? '1.0722, 1.0715, 1.0925' # _reflns.entry_id 1WQ9 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.0 _reflns.number_obs 15744 _reflns.number_all 17004 _reflns.percent_possible_obs 92.6 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 11.0 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 96.6 _reflns_shell.Rmerge_I_obs 0.236 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1WQ9 _refine.ls_number_reflns_obs 15189 _refine.ls_number_reflns_all 17004 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 213927.09 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 90.1 _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.252 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 747 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 28.1 _refine.aniso_B[1][1] 2.74 _refine.aniso_B[2][2] -0.59 _refine.aniso_B[3][3] -2.16 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.325652 _refine.solvent_model_param_bsol 37.9868 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1WQ9 _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.13 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.31 _refine_analyze.Luzzati_sigma_a_free 0.20 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1509 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1652 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.80 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.06 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.16 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 5.21 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 7.00 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 2439 _refine_ls_shell.R_factor_R_work 0.212 _refine_ls_shell.percent_reflns_obs 93.6 _refine_ls_shell.R_factor_R_free 0.28 _refine_ls_shell.R_factor_R_free_error 0.025 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 130 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 BUFFER.PARAM BUFFER.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1WQ9 _struct.title 'Crystal structure of VR-1, a VEGF-F from a snake venom' _struct.pdbx_descriptor 'Vascular endothelial growth factor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WQ9 _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'Snake venom, Vascular endothelial growth factor, VEGF, VEGF-F, TOXIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is dimeric form in a asymmetric unit.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 4 ? ALA A 13 ? PRO A 4 ALA A 13 1 ? 10 HELX_P HELX_P2 2 ILE A 23 ? HIS A 27 ? ILE A 23 HIS A 27 1 ? 5 HELX_P HELX_P3 3 PRO B 4 ? ALA B 13 ? PRO B 4 ALA B 13 1 ? 10 HELX_P HELX_P4 4 ILE B 23 ? HIS B 27 ? ILE B 23 HIS B 27 1 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 56 SG ? ? A CYS 14 A CYS 56 1_555 ? ? ? ? ? ? ? 2.032 ? disulf2 disulf ? ? A CYS 39 SG ? ? ? 1_555 B CYS 48 SG ? ? A CYS 39 B CYS 48 1_555 ? ? ? ? ? ? ? 2.030 ? disulf3 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 45 A CYS 91 1_555 ? ? ? ? ? ? ? 2.021 ? disulf4 disulf ? ? A CYS 48 SG ? ? ? 1_555 B CYS 39 SG ? ? A CYS 48 B CYS 39 1_555 ? ? ? ? ? ? ? 2.039 ? disulf5 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 93 SG ? ? A CYS 49 A CYS 93 1_555 ? ? ? ? ? ? ? 2.021 ? disulf6 disulf ? ? B CYS 14 SG ? ? ? 1_555 B CYS 56 SG ? ? B CYS 14 B CYS 56 1_555 ? ? ? ? ? ? ? 2.031 ? disulf7 disulf ? ? B CYS 45 SG ? ? ? 1_555 B CYS 91 SG ? ? B CYS 45 B CYS 91 1_555 ? ? ? ? ? ? ? 2.021 ? disulf8 disulf ? ? B CYS 49 SG ? ? ? 1_555 B CYS 93 SG ? ? B CYS 49 B CYS 93 1_555 ? ? ? ? ? ? ? 2.028 ? covale1 covale both ? B PCA 1 C ? ? ? 1_555 B VAL 2 N ? ? B PCA 1 B VAL 2 1_555 ? ? ? ? ? ? ? 1.324 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ARG 36 A . ? ARG 36 A PRO 37 A ? PRO 37 A 1 -3.52 2 ARG 36 B . ? ARG 36 B PRO 37 B ? PRO 37 B 1 -4.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 3 ? D ? 2 ? E ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 15 ? SER A 22 ? GLN A 15 SER A 22 A 2 CYS A 39 ? SER A 46 ? CYS A 39 SER A 46 B 1 ILE A 34 ? ARG A 36 ? ILE A 34 ARG A 36 B 2 MET A 54 ? MET A 71 ? MET A 54 MET A 71 B 3 SER A 78 ? PRO A 95 ? SER A 78 PRO A 95 C 1 ILE A 34 ? ARG A 36 ? ILE A 34 ARG A 36 C 2 MET A 54 ? MET A 71 ? MET A 54 MET A 71 C 3 VAL B 2 ? ARG B 3 ? VAL B 2 ARG B 3 D 1 GLN B 15 ? SER B 22 ? GLN B 15 SER B 22 D 2 CYS B 39 ? SER B 46 ? CYS B 39 SER B 46 E 1 ILE B 34 ? ARG B 36 ? ILE B 34 ARG B 36 E 2 LYS B 55 ? MET B 71 ? LYS B 55 MET B 71 E 3 SER B 78 ? ARG B 94 ? SER B 78 ARG B 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 19 ? N THR A 19 O VAL A 42 ? O VAL A 42 B 1 2 N ILE A 34 ? N ILE A 34 O MET A 71 ? O MET A 71 B 2 3 N ILE A 66 ? N ILE A 66 O MET A 83 ? O MET A 83 C 1 2 N ILE A 34 ? N ILE A 34 O MET A 71 ? O MET A 71 C 2 3 N ASP A 65 ? N ASP A 65 O ARG B 3 ? O ARG B 3 D 1 2 N THR B 19 ? N THR B 19 O VAL B 42 ? O VAL B 42 E 1 2 N ILE B 34 ? N ILE B 34 O MET B 71 ? O MET B 71 E 2 3 N ILE B 66 ? N ILE B 66 O MET B 83 ? O MET B 83 # _database_PDB_matrix.entry_id 1WQ9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WQ9 _atom_sites.fract_transf_matrix[1][1] 0.011068 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020424 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018445 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 CYS 56 56 56 CYS CYS A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 MET 71 71 71 MET MET A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 HIS 76 76 76 HIS HIS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 MET 83 83 83 MET MET A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 CYS 91 91 91 CYS CYS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 CYS 93 93 93 CYS CYS A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ALA 96 96 96 ALA ALA A . n B 2 1 PCA 1 1 1 PCA PCA B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 ARG 3 3 3 ARG ARG B . n B 2 4 PRO 4 4 4 PRO PRO B . n B 2 5 PHE 5 5 5 PHE PHE B . n B 2 6 LEU 6 6 6 LEU LEU B . n B 2 7 ASP 7 7 7 ASP ASP B . n B 2 8 VAL 8 8 8 VAL VAL B . n B 2 9 TYR 9 9 9 TYR TYR B . n B 2 10 GLN 10 10 10 GLN GLN B . n B 2 11 ARG 11 11 11 ARG ARG B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 ALA 13 13 13 ALA ALA B . n B 2 14 CYS 14 14 14 CYS CYS B . n B 2 15 GLN 15 15 15 GLN GLN B . n B 2 16 THR 16 16 16 THR THR B . n B 2 17 ARG 17 17 17 ARG ARG B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 THR 19 19 19 THR THR B . n B 2 20 LEU 20 20 20 LEU LEU B . n B 2 21 VAL 21 21 21 VAL VAL B . n B 2 22 SER 22 22 22 SER SER B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 LEU 24 24 24 LEU LEU B . n B 2 25 GLN 25 25 25 GLN GLN B . n B 2 26 GLU 26 26 26 GLU GLU B . n B 2 27 HIS 27 27 27 HIS HIS B . n B 2 28 PRO 28 28 28 PRO PRO B . n B 2 29 ASP 29 29 29 ASP ASP B . n B 2 30 GLU 30 30 30 GLU GLU B . n B 2 31 ILE 31 31 31 ILE ILE B . n B 2 32 SER 32 32 32 SER SER B . n B 2 33 ASP 33 33 33 ASP ASP B . n B 2 34 ILE 34 34 34 ILE ILE B . n B 2 35 PHE 35 35 35 PHE PHE B . n B 2 36 ARG 36 36 36 ARG ARG B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 SER 38 38 38 SER SER B . n B 2 39 CYS 39 39 39 CYS CYS B . n B 2 40 VAL 40 40 40 VAL VAL B . n B 2 41 ALA 41 41 41 ALA ALA B . n B 2 42 VAL 42 42 42 VAL VAL B . n B 2 43 LEU 43 43 43 LEU LEU B . n B 2 44 ARG 44 44 44 ARG ARG B . n B 2 45 CYS 45 45 45 CYS CYS B . n B 2 46 SER 46 46 46 SER SER B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 CYS 48 48 48 CYS CYS B . n B 2 49 CYS 49 49 49 CYS CYS B . n B 2 50 THR 50 50 50 THR THR B . n B 2 51 ASP 51 51 51 ASP ASP B . n B 2 52 GLU 52 52 52 GLU GLU B . n B 2 53 SER 53 53 53 SER SER B . n B 2 54 MET 54 54 54 MET MET B . n B 2 55 LYS 55 55 55 LYS LYS B . n B 2 56 CYS 56 56 56 CYS CYS B . n B 2 57 THR 57 57 57 THR THR B . n B 2 58 PRO 58 58 58 PRO PRO B . n B 2 59 VAL 59 59 59 VAL VAL B . n B 2 60 GLY 60 60 60 GLY GLY B . n B 2 61 LYS 61 61 61 LYS LYS B . n B 2 62 HIS 62 62 62 HIS HIS B . n B 2 63 THR 63 63 63 THR THR B . n B 2 64 ALA 64 64 64 ALA ALA B . n B 2 65 ASP 65 65 65 ASP ASP B . n B 2 66 ILE 66 66 66 ILE ILE B . n B 2 67 GLN 67 67 67 GLN GLN B . n B 2 68 ILE 68 68 68 ILE ILE B . n B 2 69 MET 69 69 69 MET MET B . n B 2 70 ARG 70 70 70 ARG ARG B . n B 2 71 MET 71 71 71 MET MET B . n B 2 72 ASN 72 72 72 ASN ASN B . n B 2 73 PRO 73 73 73 PRO PRO B . n B 2 74 ARG 74 74 74 ARG ARG B . n B 2 75 THR 75 75 75 THR THR B . n B 2 76 HIS 76 76 76 HIS HIS B . n B 2 77 SER 77 77 77 SER SER B . n B 2 78 SER 78 78 78 SER SER B . n B 2 79 LYS 79 79 79 LYS LYS B . n B 2 80 MET 80 80 80 MET MET B . n B 2 81 GLU 81 81 81 GLU GLU B . n B 2 82 VAL 82 82 82 VAL VAL B . n B 2 83 MET 83 83 83 MET MET B . n B 2 84 LYS 84 84 84 LYS LYS B . n B 2 85 PHE 85 85 85 PHE PHE B . n B 2 86 MET 86 86 86 MET MET B . n B 2 87 GLU 87 87 87 GLU GLU B . n B 2 88 HIS 88 88 88 HIS HIS B . n B 2 89 THR 89 89 89 THR THR B . n B 2 90 ALA 90 90 90 ALA ALA B . n B 2 91 CYS 91 91 91 CYS CYS B . n B 2 92 GLU 92 92 92 GLU GLU B . n B 2 93 CYS 93 93 93 CYS CYS B . n B 2 94 ARG 94 94 94 ARG ARG B . n B 2 95 PRO 95 95 95 PRO PRO B . n B 2 96 ALA 96 96 96 ALA ALA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1001 1001 HOH HOH A . C 3 HOH 2 1005 1005 HOH HOH A . C 3 HOH 3 1006 1006 HOH HOH A . C 3 HOH 4 1008 1008 HOH HOH A . C 3 HOH 5 1010 1010 HOH HOH A . C 3 HOH 6 1012 1012 HOH HOH A . C 3 HOH 7 1014 1014 HOH HOH A . C 3 HOH 8 1015 1015 HOH HOH A . C 3 HOH 9 1016 1016 HOH HOH A . C 3 HOH 10 1017 1017 HOH HOH A . C 3 HOH 11 1020 1020 HOH HOH A . C 3 HOH 12 1021 1021 HOH HOH A . C 3 HOH 13 1022 1022 HOH HOH A . C 3 HOH 14 1023 1023 HOH HOH A . C 3 HOH 15 1025 1025 HOH HOH A . C 3 HOH 16 1026 1026 HOH HOH A . C 3 HOH 17 1031 1031 HOH HOH A . C 3 HOH 18 1033 1033 HOH HOH A . C 3 HOH 19 1034 1034 HOH HOH A . C 3 HOH 20 1035 1035 HOH HOH A . C 3 HOH 21 1036 1036 HOH HOH A . C 3 HOH 22 1037 1037 HOH HOH A . C 3 HOH 23 1038 1038 HOH HOH A . C 3 HOH 24 1040 1040 HOH HOH A . C 3 HOH 25 1041 1041 HOH HOH A . C 3 HOH 26 1048 1048 HOH HOH A . C 3 HOH 27 1051 1051 HOH HOH A . C 3 HOH 28 1052 1052 HOH HOH A . C 3 HOH 29 1053 1053 HOH HOH A . C 3 HOH 30 1054 1054 HOH HOH A . C 3 HOH 31 1056 1056 HOH HOH A . C 3 HOH 32 1057 1057 HOH HOH A . C 3 HOH 33 1060 1060 HOH HOH A . C 3 HOH 34 1061 1061 HOH HOH A . C 3 HOH 35 1063 1063 HOH HOH A . C 3 HOH 36 1066 1066 HOH HOH A . C 3 HOH 37 1068 1068 HOH HOH A . C 3 HOH 38 1069 1069 HOH HOH A . C 3 HOH 39 1070 1070 HOH HOH A . C 3 HOH 40 1071 1071 HOH HOH A . C 3 HOH 41 1073 1073 HOH HOH A . C 3 HOH 42 1074 1074 HOH HOH A . C 3 HOH 43 1075 1075 HOH HOH A . C 3 HOH 44 1077 1077 HOH HOH A . C 3 HOH 45 1081 1081 HOH HOH A . C 3 HOH 46 1082 1082 HOH HOH A . C 3 HOH 47 1090 1090 HOH HOH A . C 3 HOH 48 1092 1092 HOH HOH A . C 3 HOH 49 1097 1097 HOH HOH A . C 3 HOH 50 1098 1098 HOH HOH A . C 3 HOH 51 1099 1099 HOH HOH A . C 3 HOH 52 1100 1100 HOH HOH A . C 3 HOH 53 1101 1101 HOH HOH A . C 3 HOH 54 1102 1102 HOH HOH A . C 3 HOH 55 1103 1103 HOH HOH A . C 3 HOH 56 1105 1105 HOH HOH A . C 3 HOH 57 1108 1108 HOH HOH A . C 3 HOH 58 1109 1109 HOH HOH A . C 3 HOH 59 1110 1110 HOH HOH A . C 3 HOH 60 1111 1111 HOH HOH A . C 3 HOH 61 1112 1112 HOH HOH A . C 3 HOH 62 1113 1113 HOH HOH A . C 3 HOH 63 1114 1114 HOH HOH A . C 3 HOH 64 1115 1115 HOH HOH A . C 3 HOH 65 1117 1117 HOH HOH A . C 3 HOH 66 1120 1120 HOH HOH A . C 3 HOH 67 1122 1122 HOH HOH A . C 3 HOH 68 1133 1133 HOH HOH A . C 3 HOH 69 1135 1135 HOH HOH A . C 3 HOH 70 1136 1136 HOH HOH A . C 3 HOH 71 1137 1137 HOH HOH A . C 3 HOH 72 1138 1138 HOH HOH A . C 3 HOH 73 1139 1139 HOH HOH A . C 3 HOH 74 1140 1140 HOH HOH A . D 3 HOH 1 1002 1002 HOH HOH B . D 3 HOH 2 1003 1003 HOH HOH B . D 3 HOH 3 1004 1004 HOH HOH B . D 3 HOH 4 1007 1007 HOH HOH B . D 3 HOH 5 1009 1009 HOH HOH B . D 3 HOH 6 1011 1011 HOH HOH B . D 3 HOH 7 1013 1013 HOH HOH B . D 3 HOH 8 1018 1018 HOH HOH B . D 3 HOH 9 1019 1019 HOH HOH B . D 3 HOH 10 1024 1024 HOH HOH B . D 3 HOH 11 1027 1027 HOH HOH B . D 3 HOH 12 1028 1028 HOH HOH B . D 3 HOH 13 1029 1029 HOH HOH B . D 3 HOH 14 1030 1030 HOH HOH B . D 3 HOH 15 1032 1032 HOH HOH B . D 3 HOH 16 1039 1039 HOH HOH B . D 3 HOH 17 1042 1042 HOH HOH B . D 3 HOH 18 1043 1043 HOH HOH B . D 3 HOH 19 1044 1044 HOH HOH B . D 3 HOH 20 1045 1045 HOH HOH B . D 3 HOH 21 1046 1046 HOH HOH B . D 3 HOH 22 1047 1047 HOH HOH B . D 3 HOH 23 1049 1049 HOH HOH B . D 3 HOH 24 1050 1050 HOH HOH B . D 3 HOH 25 1055 1055 HOH HOH B . D 3 HOH 26 1058 1058 HOH HOH B . D 3 HOH 27 1059 1059 HOH HOH B . D 3 HOH 28 1062 1062 HOH HOH B . D 3 HOH 29 1064 1064 HOH HOH B . D 3 HOH 30 1065 1065 HOH HOH B . D 3 HOH 31 1067 1067 HOH HOH B . D 3 HOH 32 1072 1072 HOH HOH B . D 3 HOH 33 1076 1076 HOH HOH B . D 3 HOH 34 1078 1078 HOH HOH B . D 3 HOH 35 1079 1079 HOH HOH B . D 3 HOH 36 1080 1080 HOH HOH B . D 3 HOH 37 1083 1083 HOH HOH B . D 3 HOH 38 1084 1084 HOH HOH B . D 3 HOH 39 1085 1085 HOH HOH B . D 3 HOH 40 1086 1086 HOH HOH B . D 3 HOH 41 1087 1087 HOH HOH B . D 3 HOH 42 1088 1088 HOH HOH B . D 3 HOH 43 1089 1089 HOH HOH B . D 3 HOH 44 1091 1091 HOH HOH B . D 3 HOH 45 1093 1093 HOH HOH B . D 3 HOH 46 1094 1094 HOH HOH B . D 3 HOH 47 1095 1095 HOH HOH B . D 3 HOH 48 1096 1096 HOH HOH B . D 3 HOH 49 1104 1104 HOH HOH B . D 3 HOH 50 1106 1106 HOH HOH B . D 3 HOH 51 1107 1107 HOH HOH B . D 3 HOH 52 1116 1116 HOH HOH B . D 3 HOH 53 1119 1119 HOH HOH B . D 3 HOH 54 1121 1121 HOH HOH B . D 3 HOH 55 1123 1123 HOH HOH B . D 3 HOH 56 1124 1124 HOH HOH B . D 3 HOH 57 1125 1125 HOH HOH B . D 3 HOH 58 1126 1126 HOH HOH B . D 3 HOH 59 1127 1127 HOH HOH B . D 3 HOH 60 1128 1128 HOH HOH B . D 3 HOH 61 1129 1129 HOH HOH B . D 3 HOH 62 1130 1130 HOH HOH B . D 3 HOH 63 1131 1131 HOH HOH B . D 3 HOH 64 1132 1132 HOH HOH B . D 3 HOH 65 1134 1134 HOH HOH B . D 3 HOH 66 1141 1141 HOH HOH B . D 3 HOH 67 1142 1142 HOH HOH B . D 3 HOH 68 1143 1143 HOH HOH B . D 3 HOH 69 1144 1144 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id PCA _pdbx_struct_mod_residue.label_seq_id 1 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id PCA _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id GLN _pdbx_struct_mod_residue.details 'PYROGLUTAMIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2590 ? 1 MORE -14 ? 1 'SSA (A^2)' 10960 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-12-07 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2019-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Polymer sequence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_poly 2 4 'Structure model' pdbx_struct_mod_residue 3 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 2 4 'Structure model' '_pdbx_struct_mod_residue.parent_comp_id' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 SHARP phasing . ? 5 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 32 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -147.54 _pdbx_validate_torsion.psi -20.04 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #