HEADER OXIDOREDUCTASE 30-SEP-04 1WQL TITLE CUMENE DIOXYGENASE (CUMA1A2) FROM PSEUDOMONAS FLUORESCENS IP01 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON-SULFUR PROTEIN LARGE SUBUNIT OF CUMENE DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CUMENE DIOXYGENASE LARGE SUBUNIT; COMPND 5 EC: 1.14.12.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ETHYLBENZENE DIOXYGENASE SMALL SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CUMENE DIOXYGENASE SMALL SUBUNIT; COMPND 11 EC: 1.14.12.-; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 GENE: CUMA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC118; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 12 ORGANISM_TAXID: 294; SOURCE 13 GENE: CUMA2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PUC118 KEYWDS BIPHENYL DIOXYGENASE, CUMENE DIOXYGENASE, NAPHTHALENE DIOXYGENASE, KEYWDS 2 POLYCHLORINATED BIPHENYL DEGRADATION, RIESKE NON-HEME IRON KEYWDS 3 DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.DONG,S.FUSHINOBU,E.FUKUDA,T.TERADA,S.NAKAMURA,K.SHIMIZU,H.NOJIRI, AUTHOR 2 T.OMORI,H.SHOUN,T.WAKAGI REVDAT 5 23-OCT-24 1WQL 1 REMARK REVDAT 4 25-OCT-23 1WQL 1 REMARK LINK REVDAT 3 13-JUL-11 1WQL 1 VERSN REVDAT 2 24-FEB-09 1WQL 1 VERSN REVDAT 1 29-MAR-05 1WQL 0 JRNL AUTH X.DONG,S.FUSHINOBU,E.FUKUDA,T.TERADA,S.NAKAMURA,K.SHIMIZU, JRNL AUTH 2 H.NOJIRI,T.OMORI,H.SHOUN,T.WAKAGI JRNL TITL CRYSTAL STRUCTURE OF THE TERMINAL OXYGENASE COMPONENT OF JRNL TITL 2 CUMENE DIOXYGENASE FROM PSEUDOMONAS FLUORESCENS IP01 JRNL REF J.BACTERIOL. V. 187 2483 2005 JRNL REFN ISSN 0021-9193 JRNL PMID 15774891 JRNL DOI 10.1128/JB.187.7.2483-2490.2005 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3753443.730 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2678 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8445 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE : 0.2210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 450 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4994 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 472 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.670 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.790 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.730 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 39.70 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : FESO2.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : FESO2.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000023888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL40B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 15.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11300 REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29500 REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EG9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TRI-LITHIUM CITRATE REMARK 280 TETRAHYDRATE, PH 8.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 73.51800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.51800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 73.51800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.51800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.51800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 73.51800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 73.51800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 73.51800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 73.51800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 73.51800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 73.51800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 73.51800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 73.51800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 73.51800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 73.51800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 73.51800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 73.51800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 73.51800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: Z, X, Y AND Y, Z, X. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 32760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -200.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 278 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 ILE A 5 REMARK 465 ASN A 6 REMARK 465 LYS A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 GLN A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 TRP A 16 REMARK 465 VAL A 17 REMARK 465 LYS A 18 REMARK 465 LYS A 147 REMARK 465 LYS A 148 REMARK 465 GLU A 149 REMARK 465 GLY A 150 REMARK 465 ASP A 151 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 788 O HOH A 788 9555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -156.86 -145.34 REMARK 500 ARG A 92 -5.69 79.39 REMARK 500 SER A 189 -137.35 51.39 REMARK 500 VAL A 205 -172.43 77.86 REMARK 500 ASP A 231 69.68 -105.64 REMARK 500 THR A 237 -101.06 -111.65 REMARK 500 SER A 262 118.20 154.53 REMARK 500 ASP A 280 -38.71 62.24 REMARK 500 ARG A 345 59.05 -143.47 REMARK 500 THR A 377 -64.77 -106.10 REMARK 500 LEU A 399 0.41 -68.18 REMARK 500 ASP B 81 80.69 -157.49 REMARK 500 LEU B 139 -127.45 56.13 REMARK 500 ASP B 159 -167.67 -119.65 REMARK 500 SER B 175 -77.81 -105.89 REMARK 500 ASN B 181 -177.11 -172.15 REMARK 500 LEU B 182 52.30 -118.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 101 SG REMARK 620 2 FES A 501 S1 107.0 REMARK 620 3 FES A 501 S2 109.8 105.2 REMARK 620 4 CYS A 121 SG 111.4 112.1 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 103 ND1 REMARK 620 2 FES A 501 S1 113.8 REMARK 620 3 FES A 501 S2 115.4 106.5 REMARK 620 4 HIS A 124 ND1 87.3 115.6 117.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 234 NE2 REMARK 620 2 HIS A 240 NE2 103.7 REMARK 620 3 ASP A 388 OD2 101.6 100.2 REMARK 620 4 OXY A 503 O2 84.6 148.0 108.4 REMARK 620 5 OXY A 503 O1 101.2 116.1 130.4 32.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 503 DBREF 1WQL A 1 459 UNP Q51743 Q51743_PSEFL 1 459 DBREF 1WQL B 1 186 UNP Q51744 Q51744_PSEFL 1 186 SEQRES 1 A 459 MET SER SER ILE ILE ASN LYS GLU VAL GLN GLU ALA PRO SEQRES 2 A 459 LEU LYS TRP VAL LYS ASN TRP SER ASP GLU GLU ILE LYS SEQRES 3 A 459 ALA LEU VAL ASP GLU GLU LYS GLY LEU LEU ASP PRO ARG SEQRES 4 A 459 ILE PHE SER ASP GLN ASP LEU TYR GLU ILE GLU LEU GLU SEQRES 5 A 459 ARG VAL PHE ALA ARG SER TRP LEU LEU LEU GLY HIS GLU SEQRES 6 A 459 GLY HIS ILE PRO LYS ALA GLY ASP TYR LEU THR THR TYR SEQRES 7 A 459 MET GLY GLU ASP PRO VAL ILE VAL VAL ARG GLN LYS ASP SEQRES 8 A 459 ARG SER ILE LYS VAL PHE LEU ASN GLN CYS ARG HIS ARG SEQRES 9 A 459 GLY MET ARG ILE GLU ARG SER ASP PHE GLY ASN ALA LYS SEQRES 10 A 459 SER PHE THR CYS THR TYR HIS GLY TRP ALA TYR ASP THR SEQRES 11 A 459 ALA GLY ASN LEU VAL ASN VAL PRO TYR GLU LYS GLU ALA SEQRES 12 A 459 PHE CYS ASP LYS LYS GLU GLY ASP CYS GLY PHE ASP LYS SEQRES 13 A 459 ALA ASP TRP GLY PRO LEU GLN ALA ARG VAL ASP THR TYR SEQRES 14 A 459 LYS GLY LEU ILE PHE ALA ASN TRP ASP THR GLU ALA PRO SEQRES 15 A 459 ASP LEU LYS THR TYR LEU SER ASP ALA THR PRO TYR MET SEQRES 16 A 459 ASP VAL MET LEU ASP ARG THR GLU ALA VAL THR GLN VAL SEQRES 17 A 459 ILE THR GLY MET GLN LYS THR VAL ILE PRO CYS ASN TRP SEQRES 18 A 459 LYS PHE ALA ALA GLU GLN PHE CYS SER ASP MET TYR HIS SEQRES 19 A 459 ALA GLY THR MET ALA HIS LEU SER GLY VAL LEU SER SER SEQRES 20 A 459 LEU PRO PRO GLU MET ASP LEU SER GLN VAL LYS LEU PRO SEQRES 21 A 459 SER SER GLY ASN GLN PHE ARG ALA LYS TRP GLY GLY HIS SEQRES 22 A 459 GLY THR GLY TRP PHE ASN ASP ASP PHE ALA LEU LEU GLN SEQRES 23 A 459 ALA ILE MET GLY PRO LYS VAL VAL ASP TYR TRP THR LYS SEQRES 24 A 459 GLY PRO ALA ALA GLU ARG ALA LYS GLU ARG LEU GLY LYS SEQRES 25 A 459 VAL LEU PRO ALA ASP ARG MET VAL ALA GLN HIS MET THR SEQRES 26 A 459 ILE PHE PRO THR CYS SER PHE LEU PRO GLY ILE ASN THR SEQRES 27 A 459 VAL ARG THR TRP HIS PRO ARG GLY PRO ASN GLU ILE GLU SEQRES 28 A 459 VAL TRP SER PHE ILE VAL VAL ASP ALA ASP ALA PRO GLU SEQRES 29 A 459 ASP ILE LYS GLU GLU TYR ARG ARG LYS ASN ILE PHE THR SEQRES 30 A 459 PHE ASN GLN GLY GLY THR TYR GLU GLN ASP ASP GLY GLU SEQRES 31 A 459 ASN TRP VAL GLU VAL GLN ARG GLY LEU ARG GLY TYR LYS SEQRES 32 A 459 ALA ARG SER ARG PRO LEU CYS ALA GLN MET GLY ALA GLY SEQRES 33 A 459 VAL PRO ASN LYS ASN ASN PRO GLU PHE PRO GLY LYS THR SEQRES 34 A 459 SER TYR VAL TYR SER GLU GLU ALA ALA ARG GLY PHE TYR SEQRES 35 A 459 HIS HIS TRP SER ARG MET MET SER GLU PRO SER TRP ASP SEQRES 36 A 459 THR LEU LYS SER SEQRES 1 B 186 MET THR SER ALA ASP LEU THR LYS PRO ILE GLU TRP PRO SEQRES 2 B 186 GLU MET PRO VAL SER LEU GLU LEU GLN ASN ALA VAL GLU SEQRES 3 B 186 GLN PHE TYR TYR ARG GLU ALA GLN LEU LEU ASP TYR GLN SEQRES 4 B 186 ASN TYR GLU ALA TRP LEU ALA LEU LEU THR GLN ASP ILE SEQRES 5 B 186 GLN TYR TRP MET PRO ILE ARG THR THR HIS THR SER ARG SEQRES 6 B 186 ASN LYS ALA MET GLU TYR VAL PRO PRO GLY GLY ASN ALA SEQRES 7 B 186 HIS PHE ASP GLU THR TYR GLU SER MET ARG ALA ARG ILE SEQRES 8 B 186 ARG ALA ARG VAL SER GLY LEU ASN TRP THR GLU ASP PRO SEQRES 9 B 186 PRO SER ARG SER ARG HIS ILE VAL SER ASN VAL ILE VAL SEQRES 10 B 186 ARG GLU THR GLU SER ALA GLY THR LEU GLU VAL SER SER SEQRES 11 B 186 ALA PHE LEU CYS TYR ARG ASN ARG LEU GLU ARG MET THR SEQRES 12 B 186 ASP ILE TYR VAL GLY GLU ARG ARG ASP ILE LEU LEU ARG SEQRES 13 B 186 VAL SER ASP GLY LEU GLY PHE LYS ILE ALA LYS ARG THR SEQRES 14 B 186 ILE LEU LEU ASP GLN SER THR ILE THR ALA ASN ASN LEU SEQRES 15 B 186 SER GLN PHE PHE HET FE2 A 502 1 HET FES A 501 4 HET OXY A 503 2 HETNAM FE2 FE (II) ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM OXY OXYGEN MOLECULE FORMUL 3 FE2 FE 2+ FORMUL 4 FES FE2 S2 FORMUL 5 OXY O2 FORMUL 6 HOH *472(H2 O) HELIX 1 1 SER A 21 ALA A 27 1 7 HELIX 2 2 PRO A 38 SER A 42 5 5 HELIX 3 3 ASP A 43 VAL A 54 1 12 HELIX 4 4 PHE A 55 SER A 58 5 4 HELIX 5 5 GLY A 66 ILE A 68 5 3 HELIX 6 6 TYR A 139 PHE A 144 1 6 HELIX 7 7 ASP A 155 TRP A 159 5 5 HELIX 8 8 ASP A 183 LEU A 188 1 6 HELIX 9 9 ALA A 191 ASP A 200 1 10 HELIX 10 10 ASN A 220 ASP A 231 1 12 HELIX 11 11 MET A 232 THR A 237 1 6 HELIX 12 12 HIS A 240 LEU A 248 1 9 HELIX 13 13 ASP A 253 VAL A 257 5 5 HELIX 14 14 PHE A 282 LYS A 299 1 18 HELIX 15 15 GLY A 300 GLY A 311 1 12 HELIX 16 16 PRO A 315 ASP A 317 5 3 HELIX 17 17 PRO A 363 PHE A 378 1 16 HELIX 18 18 TYR A 384 LEU A 399 1 16 HELIX 19 19 ARG A 400 GLY A 401 5 2 HELIX 20 20 TYR A 402 SER A 406 5 5 HELIX 21 21 GLU A 435 GLU A 451 1 17 HELIX 22 22 SER A 453 LYS A 458 1 6 HELIX 23 23 SER B 18 TYR B 38 1 21 HELIX 24 24 ASN B 40 ALA B 46 1 7 HELIX 25 25 THR B 63 GLU B 70 5 8 HELIX 26 26 THR B 83 VAL B 95 1 13 HELIX 27 27 ASN B 99 ASP B 103 5 5 SHEET 1 A 3 VAL A 29 ASP A 30 0 SHEET 2 A 3 LEU A 35 LEU A 36 -1 O LEU A 35 N ASP A 30 SHEET 3 A 3 LEU A 409 CYS A 410 -1 O LEU A 409 N LEU A 36 SHEET 1 B 7 LEU A 60 HIS A 64 0 SHEET 2 B 7 LEU A 172 ASN A 176 -1 O ALA A 175 N LEU A 60 SHEET 3 B 7 GLN A 163 TYR A 169 -1 N ASP A 167 O PHE A 174 SHEET 4 B 7 ILE A 94 LEU A 98 -1 N VAL A 96 O ALA A 164 SHEET 5 B 7 ASP A 82 ARG A 88 -1 N ILE A 85 O PHE A 97 SHEET 6 B 7 ASP A 73 MET A 79 -1 N THR A 77 O VAL A 84 SHEET 7 B 7 PHE A 113 ASN A 115 -1 O GLY A 114 N TYR A 74 SHEET 1 C 3 PHE A 119 THR A 120 0 SHEET 2 C 3 ALA A 127 TYR A 128 -1 O TYR A 128 N PHE A 119 SHEET 3 C 3 LEU A 134 ASN A 136 -1 O ASN A 136 N ALA A 127 SHEET 1 D 3 THR A 206 VAL A 208 0 SHEET 2 D 3 ILE A 350 ASP A 359 -1 O VAL A 358 N GLN A 207 SHEET 3 D 3 GLN A 213 ILE A 217 -1 N THR A 215 O VAL A 352 SHEET 1 E 8 THR A 206 VAL A 208 0 SHEET 2 E 8 ILE A 350 ASP A 359 -1 O VAL A 358 N GLN A 207 SHEET 3 E 8 THR A 338 PRO A 344 -1 N VAL A 339 O PHE A 355 SHEET 4 E 8 CYS A 330 PHE A 332 -1 N SER A 331 O ARG A 340 SHEET 5 E 8 MET A 319 ILE A 326 -1 N ILE A 326 O CYS A 330 SHEET 6 E 8 GLY A 274 ASN A 279 -1 N PHE A 278 O VAL A 320 SHEET 7 E 8 GLY A 263 ARG A 267 -1 N PHE A 266 O THR A 275 SHEET 8 E 8 LYS A 428 TYR A 431 -1 O LYS A 428 N ARG A 267 SHEET 1 F 6 ALA B 78 GLU B 82 0 SHEET 2 F 6 TYR B 54 PRO B 57 -1 N TYR B 54 O GLU B 82 SHEET 3 F 6 PHE B 163 LEU B 172 1 O ILE B 170 N TRP B 55 SHEET 4 F 6 MET B 142 ARG B 156 -1 N GLU B 149 O LEU B 171 SHEET 5 F 6 THR B 125 ARG B 138 -1 N CYS B 134 O TYR B 146 SHEET 6 F 6 ARG B 107 GLU B 119 -1 N ARG B 107 O ASN B 137 SSBOND 1 CYS A 145 CYS A 152 1555 1555 2.03 LINK SG CYS A 101 FE2 FES A 501 1555 1555 2.44 LINK ND1 HIS A 103 FE1 FES A 501 1555 1555 2.21 LINK SG CYS A 121 FE2 FES A 501 1555 1555 2.30 LINK ND1 HIS A 124 FE1 FES A 501 1555 1555 2.18 LINK NE2 HIS A 234 FE FE2 A 502 1555 1555 2.15 LINK NE2 HIS A 240 FE FE2 A 502 1555 1555 1.99 LINK OD2 ASP A 388 FE FE2 A 502 1555 1555 1.96 LINK FE FE2 A 502 O2 OXY A 503 1555 1555 2.70 LINK FE FE2 A 502 O1 OXY A 503 1555 1555 2.07 CISPEP 1 PHE A 327 PRO A 328 0 -0.26 CISPEP 2 ASP B 103 PRO B 104 0 0.43 SITE 1 AC1 5 GLN A 227 HIS A 234 HIS A 240 ASP A 388 SITE 2 AC1 5 OXY A 503 SITE 1 AC2 7 CYS A 101 HIS A 103 ARG A 104 CYS A 121 SITE 2 AC2 7 TYR A 123 HIS A 124 TRP A 126 SITE 1 AC3 6 GLN A 227 HIS A 234 HIS A 240 PHE A 378 SITE 2 AC3 6 ASP A 388 FE2 A 502 CRYST1 147.036 147.036 147.036 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006801 0.00000