HEADER TRANSCRIPTION FACTOR 29-JUL-96 1WTU TITLE TRANSCRIPTION FACTOR 1, NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TF1; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THIS PROTEIN IS THE BACILLUS SUBTILIS PHAGE SPO1- COMPND 7 ENCODED TYPE II DNA-BINDING PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE SPO1; SOURCE 3 ORGANISM_TAXID: 10685; SOURCE 4 GENE: TF1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKJB842; SOURCE 8 EXPRESSION_SYSTEM_GENE: TF1 KEYWDS TRANSCRIPTION FACTOR, TYPE II DNA-BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR X.JIA,A.GROVE,M.IVANCIC,V.L.HSU,E.P.GEIDUSCHEK,D.R.KEARNS REVDAT 3 02-MAR-22 1WTU 1 REMARK REVDAT 2 24-FEB-09 1WTU 1 VERSN REVDAT 1 12-FEB-97 1WTU 0 JRNL AUTH X.JIA,A.GROVE,M.IVANCIC,V.L.HSU,E.P.GEIDUSCHECK,D.R.KEARNS JRNL TITL STRUCTURE OF THE BACILLUS SUBTILIS PHAGE SPO1-ENCODED TYPE JRNL TITL 2 II DNA-BINDING PROTEIN TF1 IN SOLUTION. JRNL REF J.MOL.BIOL. V. 263 259 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8913305 JRNL DOI 10.1006/JMBI.1996.0573 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.JIA,J.M.REISMAN,V.L.HSU,E.P.GEIDUSCHEK,J.PARELLO, REMARK 1 AUTH 2 D.R.KEARNS REMARK 1 TITL PROTON AND NITROGEN NMR SEQUENCE-SPECIFIC ASSIGNMENTS AND REMARK 1 TITL 2 SECONDARY STRUCTURE DETERMINATION OF THE BACILLUS SUBTILIS REMARK 1 TITL 3 SPO1-ENCODED TRANSCRIPTION FACTOR 1 REMARK 1 REF BIOCHEMISTRY V. 33 8842 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.TANAKA,K.APPELT,J.DIJK,S.W.WHITE,K.S.WILSON REMARK 1 TITL 3-A RESOLUTION STRUCTURE OF A PROTEIN WITH HISTONE-LIKE REMARK 1 TITL 2 PROPERTIES IN PROKARYOTES REMARK 1 REF NATURE V. 310 376 1984 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177234. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 74 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 TYR A 94 CB - CG - CD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 TYR A 94 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE A 97 CB - CG - CD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 PRO B 63 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 PRO B 73 C - N - CD ANGL. DEV. = -13.7 DEGREES REMARK 500 TYR B 94 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 -90.62 63.41 REMARK 500 ASP A 13 -80.21 -109.98 REMARK 500 LEU A 16 -61.48 -6.46 REMARK 500 THR A 33 -52.71 -26.77 REMARK 500 THR A 35 -75.80 -59.36 REMARK 500 ALA A 37 -74.02 -46.63 REMARK 500 ASP A 40 -54.85 -27.15 REMARK 500 LYS A 41 105.70 -43.00 REMARK 500 THR A 45 50.43 34.99 REMARK 500 PHE A 47 -51.62 -136.40 REMARK 500 LYS A 51 108.84 -163.12 REMARK 500 ARG A 55 85.36 -165.43 REMARK 500 GLN A 56 -51.11 -135.44 REMARK 500 ALA A 57 102.17 55.16 REMARK 500 ARG A 58 97.83 177.04 REMARK 500 LYS A 59 -93.68 -75.25 REMARK 500 ASN A 62 172.84 163.90 REMARK 500 GLN A 64 -80.47 -157.31 REMARK 500 GLN A 66 30.85 131.25 REMARK 500 GLU A 67 86.16 40.94 REMARK 500 ALA A 68 -87.57 -172.35 REMARK 500 LEU A 69 -81.17 80.21 REMARK 500 GLU A 70 -112.13 -121.28 REMARK 500 VAL A 75 154.67 172.29 REMARK 500 GLU A 83 -25.49 -33.41 REMARK 500 ALA A 89 10.72 -66.53 REMARK 500 ASN B 2 -84.39 -137.56 REMARK 500 ASP B 13 -80.65 -109.98 REMARK 500 THR B 14 -165.34 -74.15 REMARK 500 GLU B 15 19.43 49.84 REMARK 500 LEU B 16 -47.10 -23.51 REMARK 500 THR B 35 -82.57 -53.59 REMARK 500 ASP B 40 -71.91 -19.78 REMARK 500 LYS B 41 113.89 -29.78 REMARK 500 PHE B 47 -42.04 -132.70 REMARK 500 LYS B 51 88.82 -156.55 REMARK 500 ARG B 55 72.70 -153.63 REMARK 500 GLN B 56 -165.06 28.53 REMARK 500 LYS B 59 98.99 39.37 REMARK 500 ASN B 62 -159.47 165.44 REMARK 500 GLN B 64 -61.66 -175.70 REMARK 500 GLN B 66 130.75 1.18 REMARK 500 GLU B 67 93.42 0.02 REMARK 500 ALA B 68 -106.96 -163.37 REMARK 500 LEU B 69 175.46 56.65 REMARK 500 GLU B 70 63.41 -110.96 REMARK 500 ALA B 72 -38.95 -176.85 REMARK 500 SER B 74 -156.23 56.93 REMARK 500 VAL B 75 -48.31 -130.34 REMARK 500 PRO B 81 -158.86 -99.71 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 54 ARG B 55 138.50 REMARK 500 PHE B 61 ASN B 62 -144.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 55 0.22 SIDE CHAIN REMARK 500 ARG A 58 0.27 SIDE CHAIN REMARK 500 TYR A 94 0.22 SIDE CHAIN REMARK 500 PHE A 97 0.13 SIDE CHAIN REMARK 500 ARG B 55 0.32 SIDE CHAIN REMARK 500 ARG B 58 0.23 SIDE CHAIN REMARK 500 TYR B 94 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 94 12.31 REMARK 500 ALA B 54 -11.83 REMARK 500 ARG B 55 -10.49 REMARK 500 PHE B 61 13.54 REMARK 500 TYR B 94 10.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 1WTU A 1 99 UNP P04445 TF1_BPSP1 1 99 DBREF 1WTU B 1 99 UNP P04445 TF1_BPSP1 1 99 SEQRES 1 A 99 MET ASN LYS THR GLU LEU ILE LYS ALA ILE ALA GLN ASP SEQRES 2 A 99 THR GLU LEU THR GLN VAL SER VAL SER LYS MET LEU ALA SEQRES 3 A 99 SER PHE GLU LYS ILE THR THR GLU THR VAL ALA LYS GLY SEQRES 4 A 99 ASP LYS VAL GLN LEU THR GLY PHE LEU ASN ILE LYS PRO SEQRES 5 A 99 VAL ALA ARG GLN ALA ARG LYS GLY PHE ASN PRO GLN THR SEQRES 6 A 99 GLN GLU ALA LEU GLU ILE ALA PRO SER VAL GLY VAL SER SEQRES 7 A 99 VAL LYS PRO GLY GLU SER LEU LYS LYS ALA ALA GLU GLY SEQRES 8 A 99 LEU LYS TYR GLU ASP PHE ALA LYS SEQRES 1 B 99 MET ASN LYS THR GLU LEU ILE LYS ALA ILE ALA GLN ASP SEQRES 2 B 99 THR GLU LEU THR GLN VAL SER VAL SER LYS MET LEU ALA SEQRES 3 B 99 SER PHE GLU LYS ILE THR THR GLU THR VAL ALA LYS GLY SEQRES 4 B 99 ASP LYS VAL GLN LEU THR GLY PHE LEU ASN ILE LYS PRO SEQRES 5 B 99 VAL ALA ARG GLN ALA ARG LYS GLY PHE ASN PRO GLN THR SEQRES 6 B 99 GLN GLU ALA LEU GLU ILE ALA PRO SER VAL GLY VAL SER SEQRES 7 B 99 VAL LYS PRO GLY GLU SER LEU LYS LYS ALA ALA GLU GLY SEQRES 8 B 99 LEU LYS TYR GLU ASP PHE ALA LYS HELIX 1 1 LYS A 3 GLN A 12 1 10 HELIX 2 2 GLN A 18 GLY A 39 1 22 HELIX 3 3 GLU A 83 GLU A 90 1 8 HELIX 4 4 LYS A 93 ASP A 96 1 4 HELIX 5 5 LYS B 3 GLN B 12 1 10 HELIX 6 6 GLN B 18 GLY B 39 1 22 HELIX 7 7 SER B 84 ALA B 89 1 6 SHEET 1 A 2 ASN A 49 PRO A 52 0 SHEET 2 A 2 VAL A 77 LYS A 80 -1 N LYS A 80 O ASN A 49 SHEET 1 B 2 ASN B 49 VAL B 53 0 SHEET 2 B 2 GLY B 76 LYS B 80 -1 N LYS B 80 O ASN B 49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000