data_1WVD
# 
_entry.id   1WVD 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.386 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1WVD         pdb_00001wvd 10.2210/pdb1wvd/pdb 
NDB   AR0055       ?            ?                   
RCSB  RCSB024045   ?            ?                   
WWPDB D_1000024045 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2004-12-21 
2 'Structure model' 1 1 2008-04-30 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2024-02-14 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom         
2 4 'Structure model' chem_comp_bond         
3 4 'Structure model' database_2             
4 4 'Structure model' pdbx_struct_conn_angle 
5 4 'Structure model' struct_conn            
6 4 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_database_2.pdbx_DOI'                        
2  4 'Structure model' '_database_2.pdbx_database_accession'         
3  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
4  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
5  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
6  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
7  4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
8  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
9  4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
13 4 'Structure model' '_struct_conn.pdbx_dist_value'                
14 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'             
15 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
18 4 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
19 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
20 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
21 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'             
22 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
23 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
24 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
25 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
26 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
27 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
28 4 'Structure model' '_struct_site.pdbx_auth_asym_id'              
29 4 'Structure model' '_struct_site.pdbx_auth_comp_id'              
30 4 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1WVD 
_pdbx_database_status.recvd_initial_deposition_date   2004-12-15 
_pdbx_database_status.deposit_site                    PDBJ 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_pdbx_database_related.db_name 
_pdbx_database_related.db_id 
_pdbx_database_related.details 
_pdbx_database_related.content_type 
PDB 1Y95 'HIV-1 Dis(Mal) Duplex Pb-Soaked'          unspecified 
PDB 1Y6T 'HIV-1 Dis(Mal) Duplex Co Hexamine-Soaked' unspecified 
PDB 1Y6S 'HIV-1 Dis(Mal) Duplex BaCl2-Soaked'       unspecified 
PDB 1Y73 'HIV-1 Dis(Mal) Duplex PtCl4-Soaked'       unspecified 
PDB 1Y90 'HIV-1 Dis(Mal) Duplex MnCl2-Soaked'       unspecified 
PDB 462D 'HIV-1 Dis(Mal) Duplex Mg-Native'          unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Ennifar, E.' 1 
'Walter, P.'  2 
'Dumas, P.'   3 
# 
_citation.id                        primary 
_citation.title                     'A crystallographic study of the binding of 13 metal ions to two related RNA duplexes' 
_citation.journal_abbrev            'Nucleic Acids Res.' 
_citation.journal_volume            31 
_citation.page_first                2671 
_citation.page_last                 2682 
_citation.year                      2003 
_citation.journal_id_ASTM           NARHAD 
_citation.country                   UK 
_citation.journal_id_ISSN           0305-1048 
_citation.journal_id_CSD            0389 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   12736317 
_citation.pdbx_database_id_DOI      10.1093/nar/gkg350 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Ennifar, E.' 1 ? 
primary 'Walter, P.'  2 ? 
primary 'Dumas, P.'   3 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'" 7402.472 2 ? ? ? 'HIV-1 DIS RNA' 
2 non-polymer syn 'COBALT (II) ION'                                                               58.933   8 ? ? ? ?               
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       CUUGCUGAGGUGCACACAGCAAG 
_entity_poly.pdbx_seq_one_letter_code_can   CUUGCUGAGGUGCACACAGCAAG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        'COBALT (II) ION' 
_pdbx_entity_nonpoly.comp_id     CO 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  C n 
1 2  U n 
1 3  U n 
1 4  G n 
1 5  C n 
1 6  U n 
1 7  G n 
1 8  A n 
1 9  G n 
1 10 G n 
1 11 U n 
1 12 G n 
1 13 C n 
1 14 A n 
1 15 C n 
1 16 A n 
1 17 C n 
1 18 A n 
1 19 G n 
1 20 C n 
1 21 A n 
1 22 A n 
1 23 G n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A  'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
C  'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
CO non-polymer   . 'COBALT (II) ION'            ? 'Co 2'            58.933  
G  'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
U  'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  C 1  1  1  C CYT A . n 
A 1 2  U 2  2  2  U URI A . n 
A 1 3  U 3  3  3  U URI A . n 
A 1 4  G 4  4  4  G GUA A . n 
A 1 5  C 5  5  5  C CYT A . n 
A 1 6  U 6  6  6  U URI A . n 
A 1 7  G 7  7  7  G GUA A . n 
A 1 8  A 8  8  8  A ADE A . n 
A 1 9  G 9  9  9  G GUA A . n 
A 1 10 G 10 10 10 G GUA A . n 
A 1 11 U 11 11 11 U URI A . n 
A 1 12 G 12 12 12 G GUA A . n 
A 1 13 C 13 13 13 C CYT A . n 
A 1 14 A 14 14 14 A ADE A . n 
A 1 15 C 15 15 15 C CYT A . n 
A 1 16 A 16 16 16 A ADE A . n 
A 1 17 C 17 17 17 C CYT A . n 
A 1 18 A 18 18 18 A ADE A . n 
A 1 19 G 19 19 19 G GUA A . n 
A 1 20 C 20 20 20 C CYT A . n 
A 1 21 A 21 21 21 A ADE A . n 
A 1 22 A 22 22 22 A ADE A . n 
A 1 23 G 23 23 23 G GUA A . n 
B 1 1  C 1  1  1  C CYT B . n 
B 1 2  U 2  2  2  U URI B . n 
B 1 3  U 3  3  3  U URI B . n 
B 1 4  G 4  4  4  G GUA B . n 
B 1 5  C 5  5  5  C CYT B . n 
B 1 6  U 6  6  6  U URI B . n 
B 1 7  G 7  7  7  G GUA B . n 
B 1 8  A 8  8  8  A ADE B . n 
B 1 9  G 9  9  9  G GUA B . n 
B 1 10 G 10 10 10 G GUA B . n 
B 1 11 U 11 11 11 U URI B . n 
B 1 12 G 12 12 12 G GUA B . n 
B 1 13 C 13 13 13 C CYT B . n 
B 1 14 A 14 14 14 A ADE B . n 
B 1 15 C 15 15 15 C CYT B . n 
B 1 16 A 16 16 16 A ADE B . n 
B 1 17 C 17 17 17 C CYT B . n 
B 1 18 A 18 18 18 A ADE B . n 
B 1 19 G 19 19 19 G GUA B . n 
B 1 20 C 20 20 20 C CYT B . n 
B 1 21 A 21 21 21 A ADE B . n 
B 1 22 A 22 22 22 A ADE B . n 
B 1 23 G 23 23 23 G GUA B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 CO 1 501 501 CO CO2 A . 
D 2 CO 1 503 503 CO CO2 A . 
E 2 CO 1 507 507 CO CO2 A . 
F 2 CO 1 508 508 CO CO2 A . 
G 2 CO 1 502 502 CO CO2 B . 
H 2 CO 1 504 504 CO CO2 B . 
I 2 CO 1 505 505 CO CO2 B . 
J 2 CO 1 506 506 CO CO2 B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
CNS       refinement       1.1 ? 1 
DENZO     'data reduction' .   ? 2 
SCALEPACK 'data scaling'   .   ? 3 
CNS       phasing          .   ? 4 
# 
_cell.entry_id           1WVD 
_cell.length_a           59.168 
_cell.length_b           59.168 
_cell.length_c           63.996 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        120.00 
_cell.Z_PDB              12 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1WVD 
_symmetry.space_group_name_H-M             'P 31 2 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                152 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          1WVD 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      2.18 
_exptl_crystal.density_percent_sol   50 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, SITTING DROP' 
_exptl_crystal_grow.temp            310 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.0 
_exptl_crystal_grow.pdbx_details    
'MPD, spermine, KCl, MgCl2, Na Cacodylate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 310K' 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1  1 MPD             ? ? ? 
1 2  1 spermine        ? ? ? 
1 3  1 KCl             ? ? ? 
1 4  1 MgCl2           ? ? ? 
1 5  1 'Na Cacodylate' ? ? ? 
1 6  1 H2O             ? ? ? 
1 7  2 MPD             ? ? ? 
1 8  2 KCl             ? ? ? 
1 9  2 MgCl2           ? ? ? 
1 10 2 'Na Cacodylate' ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           120 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   MACSCIENCE 
_diffrn_detector.pdbx_collection_date   2000-07-10 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    mirror 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.54 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        ENRAF-NONIUS 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        1.54 
# 
_reflns.entry_id                     1WVD 
_reflns.observed_criterion_sigma_I   0 
_reflns.observed_criterion_sigma_F   0 
_reflns.d_resolution_low             15 
_reflns.d_resolution_high            2.93 
_reflns.number_obs                   5330 
_reflns.number_all                   ? 
_reflns.percent_possible_obs         99.1 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              0.066 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        42.9 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             2.93 
_reflns_shell.d_res_low              3.06 
_reflns_shell.percent_possible_all   94.1 
_reflns_shell.Rmerge_I_obs           ? 
_reflns_shell.pdbx_Rsym_value        0.139 
_reflns_shell.meanI_over_sigI_obs    ? 
_reflns_shell.pdbx_redundancy        ? 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      625 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 1WVD 
_refine.ls_number_reflns_obs                     4874 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          2.0 
_refine.pdbx_data_cutoff_high_absF               673479.45 
_refine.pdbx_data_cutoff_low_absF                0.000000 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             8.00 
_refine.ls_d_res_high                            2.93 
_refine.ls_percent_reflns_obs                    95.1 
_refine.ls_R_factor_obs                          0.208 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.208 
_refine.ls_R_factor_R_free                       0.239 
_refine.ls_R_factor_R_free_error                 0.012 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 8.2 
_refine.ls_number_reflns_R_free                  400 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.B_iso_mean                               49.8 
_refine.aniso_B[1][1]                            -3.61 
_refine.aniso_B[2][2]                            -3.61 
_refine.aniso_B[3][3]                            7.21 
_refine.aniso_B[1][2]                            3.27 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    'FLAT MODEL' 
_refine.solvent_model_param_ksol                 0.288467 
_refine.solvent_model_param_bsol                 37.4696 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          'FOURIER SYNTHESIS' 
_refine.pdbx_isotropic_thermal_model             RESTRAINED 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        1WVD 
_refine_analyze.Luzzati_coordinate_error_obs    0.33 
_refine_analyze.Luzzati_sigma_a_obs             0.44 
_refine_analyze.Luzzati_d_res_low_obs           5.00 
_refine_analyze.Luzzati_coordinate_error_free   0.41 
_refine_analyze.Luzzati_sigma_a_free            0.30 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      ? 
_refine_analyze.occupancy_sum_hydrogen          ? 
_refine_analyze.occupancy_sum_non_hydrogen      ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   1048 
_refine_hist.pdbx_number_atoms_ligand         8 
_refine_hist.number_atoms_solvent             0 
_refine_hist.number_atoms_total               1056 
_refine_hist.d_res_high                       2.93 
_refine_hist.d_res_low                        8.00 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
c_bond_d                0.008 ? ? ? 'X-RAY DIFFRACTION' ? 
c_bond_d_na             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_bond_d_prot           ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_d               ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_d_na            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_d_prot          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_deg             1.2   ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_deg_na          ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_angle_deg_prot        ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_dihedral_angle_d      13.1  ? ? ? 'X-RAY DIFFRACTION' ? 
c_dihedral_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_dihedral_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_improper_angle_d      1.58  ? ? ? 'X-RAY DIFFRACTION' ? 
c_improper_angle_d_na   ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_improper_angle_d_prot ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_mcbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_mcangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_scbond_it             ?     ? ? ? 'X-RAY DIFFRACTION' ? 
c_scangle_it            ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   6 
_refine_ls_shell.d_res_high                       2.93 
_refine_ls_shell.d_res_low                        3.10 
_refine_ls_shell.number_reflns_R_work             701 
_refine_ls_shell.R_factor_R_work                  0.301 
_refine_ls_shell.percent_reflns_obs               86.0 
_refine_ls_shell.R_factor_R_free                  0.316 
_refine_ls_shell.R_factor_R_free_error            0.049 
_refine_ls_shell.percent_reflns_R_free            5.7 
_refine_ls_shell.number_reflns_R_free             42 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
# 
loop_
_pdbx_xplor_file.serial_no 
_pdbx_xplor_file.param_file 
_pdbx_xplor_file.topol_file 
_pdbx_xplor_file.pdbx_refine_id 
1 WATER_REP.PARAM WATER.TOP   'X-RAY DIFFRACTION' 
2 DNA-RNA.PARAM   DNA-RNA.TOP 'X-RAY DIFFRACTION' 
3 ION.PARAM       ION.TOP     'X-RAY DIFFRACTION' 
4 BRU_REP.PARAM   ?           'X-RAY DIFFRACTION' 
# 
_database_PDB_matrix.entry_id          1WVD 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1WVD 
_struct.title                     'HIV-1 Dis(Mal) Duplex CoCl2-Soaked' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1WVD 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'HIV-1, RNA, bulge, metal ions' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
E N N 2 ? 
F N N 2 ? 
G N N 2 ? 
H N N 2 ? 
I N N 2 ? 
J N N 2 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1WVD 
_struct_ref.pdbx_db_accession          1WVD 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1WVD A 1 ? 23 ? 1WVD 1 ? 23 ? 1 23 
2 1 1WVD B 1 ? 23 ? 1WVD 1 ? 23 ? 1 23 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H,I,J 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id                    1 
_struct_biol.pdbx_parent_biol_id   ? 
_struct_biol.details               ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A U 3  O4  ? ? ? 1_555 D CO .  CO ? ? A U 3  A CO 503 1_555 ? ? ? ? ? ? ?            2.574 ? ? 
metalc2  metalc ? ? A G 4  O6  ? ? ? 1_555 D CO .  CO ? ? A G 4  A CO 503 1_555 ? ? ? ? ? ? ?            2.666 ? ? 
metalc3  metalc ? ? A A 8  OP2 ? ? ? 1_555 E CO .  CO ? ? A A 8  A CO 507 1_555 ? ? ? ? ? ? ?            2.348 ? ? 
metalc4  metalc ? ? A G 9  N7  ? ? ? 1_555 E CO .  CO ? ? A G 9  A CO 507 1_555 ? ? ? ? ? ? ?            2.433 ? ? 
metalc5  metalc ? ? A G 9  OP1 ? ? ? 1_555 G CO .  CO ? ? A G 9  B CO 502 1_555 ? ? ? ? ? ? ?            2.414 ? ? 
metalc6  metalc ? ? B A 8  OP2 A ? ? 1_555 J CO .  CO ? ? B A 8  B CO 506 1_555 ? ? ? ? ? ? ?            2.340 ? ? 
metalc7  metalc ? ? B A 8  OP2 B ? ? 1_555 J CO .  CO ? ? B A 8  B CO 506 1_555 ? ? ? ? ? ? ?            2.163 ? ? 
metalc8  metalc ? ? B G 9  OP1 B ? ? 1_555 G CO .  CO ? ? B G 9  B CO 502 1_555 ? ? ? ? ? ? ?            2.312 ? ? 
metalc9  metalc ? ? B G 9  N7  A ? ? 1_555 J CO .  CO ? ? B G 9  B CO 506 1_555 ? ? ? ? ? ? ?            2.542 ? ? 
metalc10 metalc ? ? B G 9  N7  B ? ? 1_555 J CO .  CO ? ? B G 9  B CO 506 1_555 ? ? ? ? ? ? ?            2.108 ? ? 
hydrog1  hydrog ? ? A C 1  N3  ? ? ? 1_555 B G  23 N1 ? ? A C 1  B G  23  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A C 1  N4  ? ? ? 1_555 B G  23 O6 ? ? A C 1  B G  23  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A C 1  O2  ? ? ? 1_555 B G  23 N2 ? ? A C 1  B G  23  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A U 2  N3  ? ? ? 1_555 B A  22 N1 ? ? A U 2  B A  22  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A U 2  O4  ? ? ? 1_555 B A  22 N6 ? ? A U 2  B A  22  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A U 3  N3  ? ? ? 1_555 B A  21 N1 ? ? A U 3  B A  21  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A U 3  O4  ? ? ? 1_555 B A  21 N6 ? ? A U 3  B A  21  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ? ? A G 4  N1  ? ? ? 1_555 B C  20 N3 ? ? A G 4  B C  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ? ? A G 4  N2  ? ? ? 1_555 B C  20 O2 ? ? A G 4  B C  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ? ? A G 4  O6  ? ? ? 1_555 B C  20 N4 ? ? A G 4  B C  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ? ? A C 5  N3  ? ? ? 1_555 B G  19 N1 ? ? A C 5  B G  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A C 5  N4  ? ? ? 1_555 B G  19 O6 ? ? A C 5  B G  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A C 5  O2  ? ? ? 1_555 B G  19 N2 ? ? A C 5  B G  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A U 6  N3  ? ? ? 1_555 B A  18 N1 ? ? A U 6  B A  18  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A U 6  O4  ? ? ? 1_555 B A  18 N6 ? ? A U 6  B A  18  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ? ? A G 7  N1  ? ? ? 1_555 B C  17 N3 ? ? A G 7  B C  17  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ? ? A G 7  N2  ? ? ? 1_555 B C  17 O2 ? ? A G 7  B C  17  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ? ? A G 7  O6  ? ? ? 1_555 B C  17 N4 ? ? A G 7  B C  17  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ? ? A G 9  N1  ? ? ? 1_555 B A  16 N1 ? ? A G 9  B A  16  1_555 ? ? ? ? ? ? TYPE_8_PAIR  ?     ? ? 
hydrog20 hydrog ? ? A G 9  O6  ? ? ? 1_555 B A  16 N6 ? ? A G 9  B A  16  1_555 ? ? ? ? ? ? TYPE_8_PAIR  ?     ? ? 
hydrog21 hydrog ? ? A G 9  N1  ? ? ? 1_555 B C  17 O2 ? ? A G 9  B C  17  1_555 ? ? ? ? ? ? 'G-C PAIR'   ?     ? ? 
hydrog22 hydrog ? ? A G 10 N1  ? ? ? 1_555 B C  15 N3 ? ? A G 10 B C  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A G 10 N2  ? ? ? 1_555 B C  15 O2 ? ? A G 10 B C  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A G 10 O6  ? ? ? 1_555 B C  15 N4 ? ? A G 10 B C  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ? ? A U 11 N3  ? ? ? 1_555 B A  14 N1 ? ? A U 11 B A  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ? ? A U 11 O4  ? ? ? 1_555 B A  14 N6 ? ? A U 11 B A  14  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ? ? A G 12 N1  ? ? ? 1_555 B C  13 N3 ? ? A G 12 B C  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ? ? A G 12 N2  ? ? ? 1_555 B C  13 O2 ? ? A G 12 B C  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ? ? A G 12 O6  ? ? ? 1_555 B C  13 N4 ? ? A G 12 B C  13  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ? ? A C 13 N3  ? ? ? 1_555 B G  12 N1 ? ? A C 13 B G  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ? ? A C 13 N4  ? ? ? 1_555 B G  12 O6 ? ? A C 13 B G  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ? ? A C 13 O2  ? ? ? 1_555 B G  12 N2 ? ? A C 13 B G  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog33 hydrog ? ? A A 14 N1  ? ? ? 1_555 B U  11 N3 ? ? A A 14 B U  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog34 hydrog ? ? A A 14 N6  ? ? ? 1_555 B U  11 O4 ? ? A A 14 B U  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog35 hydrog ? ? A C 15 N3  ? ? ? 1_555 B G  10 N1 ? ? A C 15 B G  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog36 hydrog ? ? A C 15 N4  ? ? ? 1_555 B G  10 O6 ? ? A C 15 B G  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog37 hydrog ? ? A C 15 O2  ? ? ? 1_555 B G  10 N2 ? ? A C 15 B G  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog38 hydrog ? ? A A 16 N1  ? ? ? 1_555 B G  9  N1 A ? A A 16 B G  9   1_555 ? ? ? ? ? ? TYPE_8_PAIR  ?     ? ? 
hydrog39 hydrog ? ? A A 16 N6  ? ? ? 1_555 B G  9  O6 A ? A A 16 B G  9   1_555 ? ? ? ? ? ? TYPE_8_PAIR  ?     ? ? 
hydrog40 hydrog ? ? A C 17 N3  ? ? ? 1_555 B G  7  N1 A ? A C 17 B G  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog41 hydrog ? ? A C 17 N4  ? ? ? 1_555 B G  7  O6 A ? A C 17 B G  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog42 hydrog ? ? A C 17 O2  ? ? ? 1_555 B G  7  N2 A ? A C 17 B G  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog43 hydrog ? ? A A 18 N1  ? ? ? 1_555 B U  6  N3 ? ? A A 18 B U  6   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog44 hydrog ? ? A A 18 N6  ? ? ? 1_555 B U  6  O4 ? ? A A 18 B U  6   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog45 hydrog ? ? A G 19 N1  ? ? ? 1_555 B C  5  N3 ? ? A G 19 B C  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog46 hydrog ? ? A G 19 N2  ? ? ? 1_555 B C  5  O2 ? ? A G 19 B C  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog47 hydrog ? ? A G 19 O6  ? ? ? 1_555 B C  5  N4 ? ? A G 19 B C  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog48 hydrog ? ? A C 20 N3  ? ? ? 1_555 B G  4  N1 ? ? A C 20 B G  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog49 hydrog ? ? A C 20 N4  ? ? ? 1_555 B G  4  O6 ? ? A C 20 B G  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog50 hydrog ? ? A C 20 O2  ? ? ? 1_555 B G  4  N2 ? ? A C 20 B G  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog51 hydrog ? ? A A 21 N1  ? ? ? 1_555 B U  3  N3 ? ? A A 21 B U  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog52 hydrog ? ? A A 21 N6  ? ? ? 1_555 B U  3  O4 ? ? A A 21 B U  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog53 hydrog ? ? A A 22 N1  ? ? ? 1_555 B U  2  N3 ? ? A A 22 B U  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog54 hydrog ? ? A A 22 N6  ? ? ? 1_555 B U  2  O4 ? ? A A 22 B U  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog55 hydrog ? ? A G 23 N1  ? ? ? 1_555 B C  1  N3 ? ? A G 23 B C  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog56 hydrog ? ? A G 23 N2  ? ? ? 1_555 B C  1  O2 ? ? A G 23 B C  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog57 hydrog ? ? A G 23 O6  ? ? ? 1_555 B C  1  N4 ? ? A G 23 B C  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1 O4  ? A U 3 ? A U 3 ? 1_555 CO ? D CO . ? A CO 503 ? 1_555 O6  ? A G 4 ? A G 4 ? 1_555 78.0  ? 
2 OP2 ? A A 8 ? A A 8 ? 1_555 CO ? E CO . ? A CO 507 ? 1_555 N7  ? A G 9 ? A G 9 ? 1_555 93.3  ? 
3 OP1 ? A G 9 ? A G 9 ? 1_555 CO ? G CO . ? B CO 502 ? 1_555 OP1 B B G 9 ? B G 9 ? 1_555 157.1 ? 
4 OP2 A B A 8 ? B A 8 ? 1_555 CO ? J CO . ? B CO 506 ? 1_555 OP2 B B A 8 ? B A 8 ? 1_555 19.3  ? 
5 OP2 A B A 8 ? B A 8 ? 1_555 CO ? J CO . ? B CO 506 ? 1_555 N7  A B G 9 ? B G 9 ? 1_555 75.6  ? 
6 OP2 B B A 8 ? B A 8 ? 1_555 CO ? J CO . ? B CO 506 ? 1_555 N7  A B G 9 ? B G 9 ? 1_555 94.7  ? 
7 OP2 A B A 8 ? B A 8 ? 1_555 CO ? J CO . ? B CO 506 ? 1_555 N7  B B G 9 ? B G 9 ? 1_555 55.6  ? 
8 OP2 B B A 8 ? B A 8 ? 1_555 CO ? J CO . ? B CO 506 ? 1_555 N7  B B G 9 ? B G 9 ? 1_555 74.8  ? 
9 N7  A B G 9 ? B G 9 ? 1_555 CO ? J CO . ? B CO 506 ? 1_555 N7  B B G 9 ? B G 9 ? 1_555 20.2  ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software B CO 502 ? 2 'BINDING SITE FOR RESIDUE CO B 502' 
AC2 Software A CO 503 ? 2 'BINDING SITE FOR RESIDUE CO A 503' 
AC3 Software B CO 505 ? 1 'BINDING SITE FOR RESIDUE CO B 505' 
AC4 Software B CO 506 ? 2 'BINDING SITE FOR RESIDUE CO B 506' 
AC5 Software A CO 507 ? 2 'BINDING SITE FOR RESIDUE CO A 507' 
AC6 Software A CO 508 ? 3 'BINDING SITE FOR RESIDUE CO A 508' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 2 G A 9  ? G A 9  . ? 1_555 ? 
2  AC1 2 G B 9  ? G B 9  . ? 1_555 ? 
3  AC2 2 U A 3  ? U A 3  . ? 1_555 ? 
4  AC2 2 G A 4  ? G A 4  . ? 1_555 ? 
5  AC3 1 G B 7  ? G B 7  . ? 1_555 ? 
6  AC4 2 A B 8  ? A B 8  . ? 1_555 ? 
7  AC4 2 G B 9  ? G B 9  . ? 1_555 ? 
8  AC5 2 A A 8  ? A A 8  . ? 1_555 ? 
9  AC5 2 G A 9  ? G A 9  . ? 1_555 ? 
10 AC6 3 G A 12 ? G A 12 . ? 1_555 ? 
11 AC6 3 G B 12 ? G B 12 . ? 1_555 ? 
12 AC6 3 C B 13 ? C B 13 . ? 1_555 ? 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 U A 3  ? ? 0.093 'SIDE CHAIN' 
2 1 C A 15 ? ? 0.062 'SIDE CHAIN' 
# 
loop_
_pdbx_validate_polymer_linkage.id 
_pdbx_validate_polymer_linkage.PDB_model_num 
_pdbx_validate_polymer_linkage.auth_atom_id_1 
_pdbx_validate_polymer_linkage.auth_asym_id_1 
_pdbx_validate_polymer_linkage.auth_comp_id_1 
_pdbx_validate_polymer_linkage.auth_seq_id_1 
_pdbx_validate_polymer_linkage.PDB_ins_code_1 
_pdbx_validate_polymer_linkage.label_alt_id_1 
_pdbx_validate_polymer_linkage.auth_atom_id_2 
_pdbx_validate_polymer_linkage.auth_asym_id_2 
_pdbx_validate_polymer_linkage.auth_comp_id_2 
_pdbx_validate_polymer_linkage.auth_seq_id_2 
_pdbx_validate_polymer_linkage.PDB_ins_code_2 
_pdbx_validate_polymer_linkage.label_alt_id_2 
_pdbx_validate_polymer_linkage.dist 
1 1 "O3'" B U 6 ? ? P B G 7  ? B 2.50 
2 1 "O3'" B G 9 ? A P B G 10 ? ? 2.40 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A  OP3    O  N N 1   
A  P      P  N N 2   
A  OP1    O  N N 3   
A  OP2    O  N N 4   
A  "O5'"  O  N N 5   
A  "C5'"  C  N N 6   
A  "C4'"  C  N R 7   
A  "O4'"  O  N N 8   
A  "C3'"  C  N S 9   
A  "O3'"  O  N N 10  
A  "C2'"  C  N R 11  
A  "O2'"  O  N N 12  
A  "C1'"  C  N R 13  
A  N9     N  Y N 14  
A  C8     C  Y N 15  
A  N7     N  Y N 16  
A  C5     C  Y N 17  
A  C6     C  Y N 18  
A  N6     N  N N 19  
A  N1     N  Y N 20  
A  C2     C  Y N 21  
A  N3     N  Y N 22  
A  C4     C  Y N 23  
A  HOP3   H  N N 24  
A  HOP2   H  N N 25  
A  "H5'"  H  N N 26  
A  "H5''" H  N N 27  
A  "H4'"  H  N N 28  
A  "H3'"  H  N N 29  
A  "HO3'" H  N N 30  
A  "H2'"  H  N N 31  
A  "HO2'" H  N N 32  
A  "H1'"  H  N N 33  
A  H8     H  N N 34  
A  H61    H  N N 35  
A  H62    H  N N 36  
A  H2     H  N N 37  
C  OP3    O  N N 38  
C  P      P  N N 39  
C  OP1    O  N N 40  
C  OP2    O  N N 41  
C  "O5'"  O  N N 42  
C  "C5'"  C  N N 43  
C  "C4'"  C  N R 44  
C  "O4'"  O  N N 45  
C  "C3'"  C  N S 46  
C  "O3'"  O  N N 47  
C  "C2'"  C  N R 48  
C  "O2'"  O  N N 49  
C  "C1'"  C  N R 50  
C  N1     N  N N 51  
C  C2     C  N N 52  
C  O2     O  N N 53  
C  N3     N  N N 54  
C  C4     C  N N 55  
C  N4     N  N N 56  
C  C5     C  N N 57  
C  C6     C  N N 58  
C  HOP3   H  N N 59  
C  HOP2   H  N N 60  
C  "H5'"  H  N N 61  
C  "H5''" H  N N 62  
C  "H4'"  H  N N 63  
C  "H3'"  H  N N 64  
C  "HO3'" H  N N 65  
C  "H2'"  H  N N 66  
C  "HO2'" H  N N 67  
C  "H1'"  H  N N 68  
C  H41    H  N N 69  
C  H42    H  N N 70  
C  H5     H  N N 71  
C  H6     H  N N 72  
CO CO     CO N N 73  
G  OP3    O  N N 74  
G  P      P  N N 75  
G  OP1    O  N N 76  
G  OP2    O  N N 77  
G  "O5'"  O  N N 78  
G  "C5'"  C  N N 79  
G  "C4'"  C  N R 80  
G  "O4'"  O  N N 81  
G  "C3'"  C  N S 82  
G  "O3'"  O  N N 83  
G  "C2'"  C  N R 84  
G  "O2'"  O  N N 85  
G  "C1'"  C  N R 86  
G  N9     N  Y N 87  
G  C8     C  Y N 88  
G  N7     N  Y N 89  
G  C5     C  Y N 90  
G  C6     C  N N 91  
G  O6     O  N N 92  
G  N1     N  N N 93  
G  C2     C  N N 94  
G  N2     N  N N 95  
G  N3     N  N N 96  
G  C4     C  Y N 97  
G  HOP3   H  N N 98  
G  HOP2   H  N N 99  
G  "H5'"  H  N N 100 
G  "H5''" H  N N 101 
G  "H4'"  H  N N 102 
G  "H3'"  H  N N 103 
G  "HO3'" H  N N 104 
G  "H2'"  H  N N 105 
G  "HO2'" H  N N 106 
G  "H1'"  H  N N 107 
G  H8     H  N N 108 
G  H1     H  N N 109 
G  H21    H  N N 110 
G  H22    H  N N 111 
U  OP3    O  N N 112 
U  P      P  N N 113 
U  OP1    O  N N 114 
U  OP2    O  N N 115 
U  "O5'"  O  N N 116 
U  "C5'"  C  N N 117 
U  "C4'"  C  N R 118 
U  "O4'"  O  N N 119 
U  "C3'"  C  N S 120 
U  "O3'"  O  N N 121 
U  "C2'"  C  N R 122 
U  "O2'"  O  N N 123 
U  "C1'"  C  N R 124 
U  N1     N  N N 125 
U  C2     C  N N 126 
U  O2     O  N N 127 
U  N3     N  N N 128 
U  C4     C  N N 129 
U  O4     O  N N 130 
U  C5     C  N N 131 
U  C6     C  N N 132 
U  HOP3   H  N N 133 
U  HOP2   H  N N 134 
U  "H5'"  H  N N 135 
U  "H5''" H  N N 136 
U  "H4'"  H  N N 137 
U  "H3'"  H  N N 138 
U  "HO3'" H  N N 139 
U  "H2'"  H  N N 140 
U  "HO2'" H  N N 141 
U  "H1'"  H  N N 142 
U  H3     H  N N 143 
U  H5     H  N N 144 
U  H6     H  N N 145 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A OP3   P      sing N N 1   
A OP3   HOP3   sing N N 2   
A P     OP1    doub N N 3   
A P     OP2    sing N N 4   
A P     "O5'"  sing N N 5   
A OP2   HOP2   sing N N 6   
A "O5'" "C5'"  sing N N 7   
A "C5'" "C4'"  sing N N 8   
A "C5'" "H5'"  sing N N 9   
A "C5'" "H5''" sing N N 10  
A "C4'" "O4'"  sing N N 11  
A "C4'" "C3'"  sing N N 12  
A "C4'" "H4'"  sing N N 13  
A "O4'" "C1'"  sing N N 14  
A "C3'" "O3'"  sing N N 15  
A "C3'" "C2'"  sing N N 16  
A "C3'" "H3'"  sing N N 17  
A "O3'" "HO3'" sing N N 18  
A "C2'" "O2'"  sing N N 19  
A "C2'" "C1'"  sing N N 20  
A "C2'" "H2'"  sing N N 21  
A "O2'" "HO2'" sing N N 22  
A "C1'" N9     sing N N 23  
A "C1'" "H1'"  sing N N 24  
A N9    C8     sing Y N 25  
A N9    C4     sing Y N 26  
A C8    N7     doub Y N 27  
A C8    H8     sing N N 28  
A N7    C5     sing Y N 29  
A C5    C6     sing Y N 30  
A C5    C4     doub Y N 31  
A C6    N6     sing N N 32  
A C6    N1     doub Y N 33  
A N6    H61    sing N N 34  
A N6    H62    sing N N 35  
A N1    C2     sing Y N 36  
A C2    N3     doub Y N 37  
A C2    H2     sing N N 38  
A N3    C4     sing Y N 39  
C OP3   P      sing N N 40  
C OP3   HOP3   sing N N 41  
C P     OP1    doub N N 42  
C P     OP2    sing N N 43  
C P     "O5'"  sing N N 44  
C OP2   HOP2   sing N N 45  
C "O5'" "C5'"  sing N N 46  
C "C5'" "C4'"  sing N N 47  
C "C5'" "H5'"  sing N N 48  
C "C5'" "H5''" sing N N 49  
C "C4'" "O4'"  sing N N 50  
C "C4'" "C3'"  sing N N 51  
C "C4'" "H4'"  sing N N 52  
C "O4'" "C1'"  sing N N 53  
C "C3'" "O3'"  sing N N 54  
C "C3'" "C2'"  sing N N 55  
C "C3'" "H3'"  sing N N 56  
C "O3'" "HO3'" sing N N 57  
C "C2'" "O2'"  sing N N 58  
C "C2'" "C1'"  sing N N 59  
C "C2'" "H2'"  sing N N 60  
C "O2'" "HO2'" sing N N 61  
C "C1'" N1     sing N N 62  
C "C1'" "H1'"  sing N N 63  
C N1    C2     sing N N 64  
C N1    C6     sing N N 65  
C C2    O2     doub N N 66  
C C2    N3     sing N N 67  
C N3    C4     doub N N 68  
C C4    N4     sing N N 69  
C C4    C5     sing N N 70  
C N4    H41    sing N N 71  
C N4    H42    sing N N 72  
C C5    C6     doub N N 73  
C C5    H5     sing N N 74  
C C6    H6     sing N N 75  
G OP3   P      sing N N 76  
G OP3   HOP3   sing N N 77  
G P     OP1    doub N N 78  
G P     OP2    sing N N 79  
G P     "O5'"  sing N N 80  
G OP2   HOP2   sing N N 81  
G "O5'" "C5'"  sing N N 82  
G "C5'" "C4'"  sing N N 83  
G "C5'" "H5'"  sing N N 84  
G "C5'" "H5''" sing N N 85  
G "C4'" "O4'"  sing N N 86  
G "C4'" "C3'"  sing N N 87  
G "C4'" "H4'"  sing N N 88  
G "O4'" "C1'"  sing N N 89  
G "C3'" "O3'"  sing N N 90  
G "C3'" "C2'"  sing N N 91  
G "C3'" "H3'"  sing N N 92  
G "O3'" "HO3'" sing N N 93  
G "C2'" "O2'"  sing N N 94  
G "C2'" "C1'"  sing N N 95  
G "C2'" "H2'"  sing N N 96  
G "O2'" "HO2'" sing N N 97  
G "C1'" N9     sing N N 98  
G "C1'" "H1'"  sing N N 99  
G N9    C8     sing Y N 100 
G N9    C4     sing Y N 101 
G C8    N7     doub Y N 102 
G C8    H8     sing N N 103 
G N7    C5     sing Y N 104 
G C5    C6     sing N N 105 
G C5    C4     doub Y N 106 
G C6    O6     doub N N 107 
G C6    N1     sing N N 108 
G N1    C2     sing N N 109 
G N1    H1     sing N N 110 
G C2    N2     sing N N 111 
G C2    N3     doub N N 112 
G N2    H21    sing N N 113 
G N2    H22    sing N N 114 
G N3    C4     sing N N 115 
U OP3   P      sing N N 116 
U OP3   HOP3   sing N N 117 
U P     OP1    doub N N 118 
U P     OP2    sing N N 119 
U P     "O5'"  sing N N 120 
U OP2   HOP2   sing N N 121 
U "O5'" "C5'"  sing N N 122 
U "C5'" "C4'"  sing N N 123 
U "C5'" "H5'"  sing N N 124 
U "C5'" "H5''" sing N N 125 
U "C4'" "O4'"  sing N N 126 
U "C4'" "C3'"  sing N N 127 
U "C4'" "H4'"  sing N N 128 
U "O4'" "C1'"  sing N N 129 
U "C3'" "O3'"  sing N N 130 
U "C3'" "C2'"  sing N N 131 
U "C3'" "H3'"  sing N N 132 
U "O3'" "HO3'" sing N N 133 
U "C2'" "O2'"  sing N N 134 
U "C2'" "C1'"  sing N N 135 
U "C2'" "H2'"  sing N N 136 
U "O2'" "HO2'" sing N N 137 
U "C1'" N1     sing N N 138 
U "C1'" "H1'"  sing N N 139 
U N1    C2     sing N N 140 
U N1    C6     sing N N 141 
U C2    O2     doub N N 142 
U C2    N3     sing N N 143 
U N3    C4     sing N N 144 
U N3    H3     sing N N 145 
U C4    O4     doub N N 146 
U C4    C5     sing N N 147 
U C5    C6     doub N N 148 
U C5    H5     sing N N 149 
U C6    H6     sing N N 150 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1WVD 'double helix'         
1WVD 'a-form double helix'  
1WVD 'bulge loop'           
1WVD 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A C 1  1_555 B G 23 1_555 0.243  -0.303 -0.033 16.447  -22.882 -3.856  1  A_C1:G23_B  A 1  ? B 23 ? 19 1 
1 A U 2  1_555 B A 22 1_555 -0.183 -0.373 -0.091 3.155   -15.602 6.442   2  A_U2:A22_B  A 2  ? B 22 ? 20 1 
1 A U 3  1_555 B A 21 1_555 0.060  -0.274 0.063  5.978   -15.689 9.780   3  A_U3:A21_B  A 3  ? B 21 ? 20 1 
1 A G 4  1_555 B C 20 1_555 -0.068 -0.035 0.095  -0.381  -15.341 -0.845  4  A_G4:C20_B  A 4  ? B 20 ? 19 1 
1 A C 5  1_555 B G 19 1_555 0.696  -0.188 0.616  -11.541 -18.112 1.125   5  A_C5:G19_B  A 5  ? B 19 ? 19 1 
1 A U 6  1_555 B A 18 1_555 0.131  -0.141 0.561  -12.035 -7.434  1.893   6  A_U6:A18_B  A 6  ? B 18 ? 20 1 
1 A G 7  1_555 B C 17 1_555 0.045  -0.316 -0.189 -1.554  -15.747 -1.544  7  A_G7:C17_B  A 7  ? B 17 ? 19 1 
1 A G 9  1_555 B A 16 1_555 -0.115 1.360  -0.521 25.145  -22.841 -11.631 8  A_G9:A16_B  A 9  ? B 16 ? 8  ? 
1 A G 10 1_555 B C 15 1_555 -0.155 -0.217 -0.094 -7.468  -10.416 1.617   9  A_G10:C15_B A 10 ? B 15 ? 19 1 
1 A U 11 1_555 B A 14 1_555 -0.919 -0.201 -0.425 -8.193  -14.217 -2.777  10 A_U11:A14_B A 11 ? B 14 ? 20 1 
1 A G 12 1_555 B C 13 1_555 -0.650 -0.430 0.137  -6.145  -9.629  -3.078  11 A_G12:C13_B A 12 ? B 13 ? 19 1 
1 A C 13 1_555 B G 12 1_555 0.080  -0.276 -0.069 4.039   -11.514 -4.189  12 A_C13:G12_B A 13 ? B 12 ? 19 1 
1 A A 14 1_555 B U 11 1_555 0.184  -0.190 0.551  14.470  -8.234  3.965   13 A_A14:U11_B A 14 ? B 11 ? 20 1 
1 A C 15 1_555 B G 10 1_555 -0.491 -0.188 0.823  -5.319  -16.625 -5.889  14 A_C15:G10_B A 15 ? B 10 ? 19 1 
1 A A 16 1_555 B G 9  1_555 0.267  1.182  -0.078 -8.863  -18.669 -17.990 15 A_A16:G9_B  A 16 ? B 9  ? 8  ? 
1 A C 17 1_555 B G 7  1_555 -0.056 -0.192 0.917  -2.067  -6.840  2.228   16 A_C17:G7_B  A 17 ? B 7  ? 19 1 
1 A A 18 1_555 B U 6  1_555 0.199  -0.043 0.352  9.520   -4.659  5.800   17 A_A18:U6_B  A 18 ? B 6  ? 20 1 
1 A G 19 1_555 B C 5  1_555 -0.353 -0.264 0.025  7.988   -20.765 0.068   18 A_G19:C5_B  A 19 ? B 5  ? 19 1 
1 A C 20 1_555 B G 4  1_555 0.151  -0.230 -0.037 2.347   -15.209 2.512   19 A_C20:G4_B  A 20 ? B 4  ? 19 1 
1 A A 21 1_555 B U 3  1_555 -0.005 0.008  0.088  -0.545  -13.560 12.694  20 A_A21:U3_B  A 21 ? B 3  ? 20 1 
1 A A 22 1_555 B U 2  1_555 -0.024 -0.307 0.251  4.069   -13.968 5.581   21 A_A22:U2_B  A 22 ? B 2  ? 20 1 
1 A G 23 1_555 B C 1  1_555 -0.420 -0.383 0.364  5.331   -15.961 -0.791  22 A_G23:C1_B  A 23 ? B 1  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A C 1  1_555 B G 23 1_555 A U 2  1_555 B A 22 1_555 0.109  -1.529 3.510 -2.005  13.831 33.847 -4.323 -0.447 2.692 22.597 3.276   
36.540 1  AA_C1U2:A22G23_BB   A 1  ? B 23 ? A 2  ? B 22 ? 
1 A U 2  1_555 B A 22 1_555 A U 3  1_555 B A 21 1_555 0.230  -0.923 3.137 -1.937  7.301  34.529 -2.524 -0.645 2.872 12.121 3.215   
35.320 2  AA_U2U3:A21A22_BB   A 2  ? B 22 ? A 3  ? B 21 ? 
1 A U 3  1_555 B A 21 1_555 A G 4  1_555 B C 20 1_555 0.041  -1.845 3.166 1.842   15.512 30.493 -5.202 0.175  2.018 27.355 -3.249  
34.176 3  AA_U3G4:C20A21_BB   A 3  ? B 21 ? A 4  ? B 20 ? 
1 A G 4  1_555 B C 20 1_555 A C 5  1_555 B G 19 1_555 -0.299 -1.252 3.662 -3.637  8.255  36.908 -3.069 -0.043 3.329 12.805 5.642   
37.957 4  AA_G4C5:G19C20_BB   A 4  ? B 20 ? A 5  ? B 19 ? 
1 A C 5  1_555 B G 19 1_555 A U 6  1_555 B A 18 1_555 0.232  -1.390 3.060 1.898   7.871  30.419 -3.869 -0.114 2.636 14.677 -3.539  
31.454 5  AA_C5U6:A18G19_BB   A 5  ? B 19 ? A 6  ? B 18 ? 
1 A U 6  1_555 B A 18 1_555 A G 7  1_555 B C 17 1_555 0.490  -1.660 2.777 6.257   15.215 28.520 -4.881 -0.067 1.759 28.122 -11.565 
32.840 6  AA_U6G7:C17A18_BB   A 6  ? B 18 ? A 7  ? B 17 ? 
1 A G 7  1_555 B C 17 1_555 A G 9  1_555 B A 16 1_555 -1.680 0.014  2.797 5.504   1.537  39.154 -0.128 3.014  2.546 2.278  -8.159  
39.553 7  AA_G7G9:A16C17_BB   A 7  ? B 17 ? A 9  ? B 16 ? 
1 A G 9  1_555 B A 16 1_555 A G 10 1_555 B C 15 1_555 0.305  -2.236 3.818 -7.885  16.347 35.268 -5.268 -1.397 2.466 25.039 12.077  
39.532 8  AA_G9G10:C15A16_BB  A 9  ? B 16 ? A 10 ? B 15 ? 
1 A G 10 1_555 B C 15 1_555 A U 11 1_555 B A 14 1_555 -0.589 -1.601 3.035 1.663   8.120  31.733 -4.047 1.291  2.526 14.542 -2.978  
32.771 9  AA_G10U11:A14C15_BB A 10 ? B 15 ? A 11 ? B 14 ? 
1 A U 11 1_555 B A 14 1_555 A G 12 1_555 B C 13 1_555 0.301  -1.620 3.247 -3.603  7.747  30.070 -4.371 -1.193 2.702 14.566 6.773   
31.233 10 AA_U11G12:C13A14_BB A 11 ? B 14 ? A 12 ? B 13 ? 
1 A G 12 1_555 B C 13 1_555 A C 13 1_555 B G 12 1_555 -0.020 -1.498 3.119 1.733   -0.171 34.684 -2.485 0.287  3.121 -0.286 -2.905  
34.726 11 AA_G12C13:G12C13_BB A 12 ? B 13 ? A 13 ? B 12 ? 
1 A C 13 1_555 B G 12 1_555 A A 14 1_555 B U 11 1_555 0.261  -1.669 2.736 -3.964  6.892  30.829 -4.025 -1.040 2.268 12.700 7.305   
31.813 12 AA_C13A14:U11G12_BB A 13 ? B 12 ? A 14 ? B 11 ? 
1 A A 14 1_555 B U 11 1_555 A C 15 1_555 B G 10 1_555 -0.001 -1.959 3.547 -1.399  6.875  30.105 -5.037 -0.275 3.032 13.015 2.648   
30.893 13 AA_A14C15:G10U11_BB A 14 ? B 11 ? A 15 ? B 10 ? 
1 A C 15 1_555 B G 10 1_555 A A 16 1_555 B G 9  1_555 -0.477 -2.272 2.904 8.216   10.953 40.414 -4.001 1.312  2.115 15.332 -11.500 
42.578 14 AA_C15A16:G9G10_BB  A 15 ? B 10 ? A 16 ? B 9  ? 
1 A A 16 1_555 B G 9  1_555 A C 17 1_555 B G 7  1_555 1.511  -0.247 3.396 -14.783 -3.157 35.561 0.000  -4.041 2.601 -4.905 22.967  
38.545 15 AA_A16C17:G7G9_BB   A 16 ? B 9  ? A 17 ? B 7  ? 
1 A C 17 1_555 B G 7  1_555 A A 18 1_555 B U 6  1_555 -0.592 -1.285 2.688 -0.121  10.402 32.303 -3.481 1.001  2.183 18.120 0.210   
33.895 16 AA_C17A18:U6G7_BB   A 17 ? B 7  ? A 18 ? B 6  ? 
1 A A 18 1_555 B U 6  1_555 A G 19 1_555 B C 5  1_555 0.008  -1.414 3.420 2.069   9.538  30.001 -4.349 0.364  2.842 17.841 -3.871  
31.514 17 AA_A18G19:C5U6_BB   A 18 ? B 6  ? A 19 ? B 5  ? 
1 A G 19 1_555 B C 5  1_555 A C 20 1_555 B G 4  1_555 0.886  -1.476 3.416 2.974   1.239  35.493 -2.600 -0.995 3.425 2.027  -4.866  
35.634 18 AA_G19C20:G4C5_BB   A 19 ? B 5  ? A 20 ? B 4  ? 
1 A C 20 1_555 B G 4  1_555 A A 21 1_555 B U 3  1_555 -0.294 -1.278 3.192 0.614   13.008 31.034 -4.132 0.600  2.467 23.079 -1.089  
33.593 19 AA_C20A21:U3G4_BB   A 20 ? B 4  ? A 21 ? B 3  ? 
1 A A 21 1_555 B U 3  1_555 A A 22 1_555 B U 2  1_555 -0.411 -0.740 3.137 0.229   11.028 30.305 -3.148 0.779  2.706 20.270 -0.420  
32.206 20 AA_A21A22:U2U3_BB   A 21 ? B 3  ? A 22 ? B 2  ? 
1 A A 22 1_555 B U 2  1_555 A G 23 1_555 B C 1  1_555 0.401  -1.426 3.092 2.478   11.236 31.576 -4.091 -0.337 2.478 19.842 -4.377  
33.557 21 AA_A22G23:C1U2_BB   A 22 ? B 2  ? A 23 ? B 1  ? 
# 
_atom_sites.entry_id                    1WVD 
_atom_sites.fract_transf_matrix[1][1]   0.016901 
_atom_sites.fract_transf_matrix[1][2]   0.009758 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.019516 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.015626 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
CO 
N  
O  
P  
# 
loop_