HEADER OXIDOREDUCTASE 05-JAN-05 1WW9 TITLE CRYSTAL STRUCTURE OF THE TERMINAL OXYGENASE COMPONENT OF CARBAZOLE 1, TITLE 2 9A-DIOXYGENASE, A NON-HEME IRON OXYGENASE SYSTEM CATALYZING THE NOVEL TITLE 3 ANGULAR DIOXYGENATION FOR CARBAZOLE AND DIOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERMINAL OXYGENASE COMPONENT OF CARBAZOLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TERMINAL OXYGENASE COMPONENT OF CARBAZOLE 1,9A-DIOXYGENASE; COMPND 5 EC: 1.14.12.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANTHINOBACTERIUM SP. J3; SOURCE 3 ORGANISM_TAXID: 213804; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEJ3AAC KEYWDS TERMINAL OXYGENASE, CARBAZOLE 1, 9A-DIOXYGENASE, ANGULAR DIOXYGENASE, KEYWDS 2 RIESKE NON-HEME IRON OXYGENASE SYSTEM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.NOJIRI,Y.ASHIKAWA,H.NOGUCHI,J.-W.NAM,M.URATA,Z.FUJIMOTO,H.MIZUNO, AUTHOR 2 T.YOSHIDA,H.HABE,T.OMORI REVDAT 5 13-MAR-24 1WW9 1 REMARK SEQADV LINK REVDAT 4 11-OCT-17 1WW9 1 REMARK REVDAT 3 13-JUL-11 1WW9 1 VERSN REVDAT 2 24-FEB-09 1WW9 1 VERSN REVDAT 1 23-AUG-05 1WW9 0 JRNL AUTH H.NOJIRI,Y.ASHIKAWA,H.NOGUCHI,J.-W.NAM,M.URATA,Z.FUJIMOTO, JRNL AUTH 2 H.UCHIMURA,T.TERADA,S.NAKAMURA,K.SHIMIZU,T.YOSHIDA,H.HABE, JRNL AUTH 3 T.OMORI JRNL TITL STRUCTURE OF THE TERMINAL OXYGENASE COMPONENT OF ANGULAR JRNL TITL 2 DIOXYGENASE, CARBAZOLE 1,9A-DIOXYGENASE JRNL REF J.MOL.BIOL. V. 351 355 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16005887 JRNL DOI 10.1016/J.JMB.2005.05.059 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2543193.120 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 54782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2726 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8732 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 443 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 57.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CIS_PEPTIDE_FINAL_RE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000024077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794, 0.9796, 0.9820 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 14.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-17.5% MPD, 0.1M MES, PH 6.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 65.95700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.95700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.95700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.95700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.95700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.95700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 65.95700 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 65.95700 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 65.95700 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 65.95700 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 65.95700 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 65.95700 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 65.95700 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 65.95700 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 65.95700 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 65.95700 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 65.95700 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 65.95700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 65.95700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 65.95700 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -65.95700 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 65.95700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 5 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 121.30 -29.46 REMARK 500 ARG A 68 112.96 -161.47 REMARK 500 HIS A 71 -80.03 -68.25 REMARK 500 ASN A 110 83.22 -165.65 REMARK 500 TYR A 253 46.33 -101.40 REMARK 500 PHE A 275 144.92 -174.13 REMARK 500 LYS A 320 -73.17 -124.67 REMARK 500 ALA A 325 -68.51 -102.90 REMARK 500 HIS A 388 -6.59 75.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 215 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 152 -10.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 FES A 401 S1 106.8 REMARK 620 3 FES A 401 S2 107.6 107.0 REMARK 620 4 CYS A 90 SG 108.4 106.6 119.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 ND1 REMARK 620 2 FES A 401 S1 117.2 REMARK 620 3 FES A 401 S2 115.2 105.8 REMARK 620 4 HIS A 93 ND1 87.7 113.6 117.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HIS A 187 NE2 107.0 REMARK 620 3 ASP A 333 OD1 103.1 99.8 REMARK 620 4 ASP A 333 OD2 154.7 91.3 55.6 REMARK 620 5 HOH A 631 O 97.6 105.8 140.5 93.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 401 DBREF 1WW9 A 1 384 UNP Q84II6 Q84II6_9BURK 1 384 SEQADV 1WW9 LEU A 385 UNP Q84II6 EXPRESSION TAG SEQADV 1WW9 GLU A 386 UNP Q84II6 EXPRESSION TAG SEQADV 1WW9 HIS A 387 UNP Q84II6 EXPRESSION TAG SEQADV 1WW9 HIS A 388 UNP Q84II6 EXPRESSION TAG SEQADV 1WW9 HIS A 389 UNP Q84II6 EXPRESSION TAG SEQADV 1WW9 HIS A 390 UNP Q84II6 EXPRESSION TAG SEQADV 1WW9 HIS A 391 UNP Q84II6 EXPRESSION TAG SEQADV 1WW9 HIS A 392 UNP Q84II6 EXPRESSION TAG SEQRES 1 A 392 MET ALA ASN VAL ASP GLU ALA ILE LEU LYS ARG VAL LYS SEQRES 2 A 392 GLY TRP ALA PRO TYR VAL ASP ALA LYS LEU GLY PHE ARG SEQRES 3 A 392 ASN HIS TRP TYR PRO VAL MET PHE SER LYS GLU ILE ASN SEQRES 4 A 392 GLU GLY GLU PRO LYS THR LEU LYS LEU LEU GLY GLU ASN SEQRES 5 A 392 LEU LEU VAL ASN ARG ILE ASP GLY LYS LEU TYR CYS LEU SEQRES 6 A 392 LYS ASP ARG CYS LEU HIS ARG GLY VAL GLN LEU SER VAL SEQRES 7 A 392 LYS VAL GLU CYS LYS THR LYS SER THR ILE THR CYS TRP SEQRES 8 A 392 TYR HIS ALA TRP THR TYR ARG TRP GLU ASP GLY VAL LEU SEQRES 9 A 392 CYS ASP ILE LEU THR ASN PRO THR SER ALA GLN ILE GLY SEQRES 10 A 392 ARG GLN LYS LEU LYS THR TYR PRO VAL GLN GLU ALA LYS SEQRES 11 A 392 GLY CYS VAL PHE ILE TYR LEU GLY ASP GLY ASP PRO PRO SEQRES 12 A 392 PRO LEU ALA ARG ASP THR PRO PRO ASN PHE LEU ASP ASP SEQRES 13 A 392 ASP MET GLU ILE LEU GLY LYS ASN GLN ILE ILE LYS SER SEQRES 14 A 392 ASN TRP ARG LEU ALA VAL GLU ASN GLY PHE ASP PRO SER SEQRES 15 A 392 HIS ILE TYR ILE HIS LYS ASP SER ILE LEU VAL LYS ASP SEQRES 16 A 392 ASN ASP LEU ALA LEU PRO LEU GLY PHE ALA PRO GLY GLY SEQRES 17 A 392 ASP ARG LYS GLN GLN THR ARG VAL VAL ASP ASP ASP VAL SEQRES 18 A 392 VAL GLY ARG LYS GLY VAL TYR ASP LEU ILE GLY GLU HIS SEQRES 19 A 392 GLY VAL PRO VAL PHE GLU GLY THR ILE GLY GLY GLU VAL SEQRES 20 A 392 VAL ARG GLU GLY ALA TYR GLY GLU LYS ILE VAL ALA ASN SEQRES 21 A 392 ASP ILE SER ILE TRP LEU PRO GLY VAL LEU LYS VAL ASN SEQRES 22 A 392 PRO PHE PRO ASN PRO ASP MET MET GLN PHE GLU TRP TYR SEQRES 23 A 392 VAL PRO ILE ASP GLU ASN THR HIS TYR TYR PHE GLN THR SEQRES 24 A 392 LEU GLY LYS PRO CYS ALA ASN ASP GLU GLU ARG LYS LYS SEQRES 25 A 392 TYR GLU GLN GLU PHE GLU SER LYS TRP LYS PRO MET ALA SEQRES 26 A 392 LEU GLU GLY PHE ASN ASN ASP ASP ILE TRP ALA ARG GLU SEQRES 27 A 392 ALA MET VAL ASP PHE TYR ALA ASP ASP LYS GLY TRP VAL SEQRES 28 A 392 ASN GLU ILE LEU PHE GLU SER ASP GLU ALA ILE VAL ALA SEQRES 29 A 392 TRP ARG LYS LEU ALA SER GLU HIS ASN GLN GLY ILE GLN SEQRES 30 A 392 THR GLN ALA HIS VAL SER GLY LEU GLU HIS HIS HIS HIS SEQRES 31 A 392 HIS HIS HET FE2 A 501 1 HET FES A 401 4 HETNAM FE2 FE (II) ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 2 FE2 FE 2+ FORMUL 3 FES FE2 S2 FORMUL 4 HOH *320(H2 O) HELIX 1 1 ASP A 5 VAL A 12 1 8 HELIX 2 2 TRP A 15 ALA A 21 1 7 HELIX 3 3 LYS A 36 ILE A 38 5 3 HELIX 4 4 GLN A 75 VAL A 80 5 6 HELIX 5 5 PRO A 144 THR A 149 5 6 HELIX 6 6 ASN A 170 ASP A 180 1 11 HELIX 7 7 PRO A 181 LYS A 188 5 8 HELIX 8 8 SER A 190 ASN A 196 1 7 HELIX 9 9 ARG A 210 GLN A 212 5 3 HELIX 10 10 LEU A 230 GLY A 235 1 6 HELIX 11 11 ASN A 306 LYS A 320 1 15 HELIX 12 12 LYS A 320 ALA A 325 1 6 HELIX 13 13 ASN A 330 ASP A 346 1 17 HELIX 14 14 LYS A 348 GLU A 353 1 6 HELIX 15 15 PHE A 356 SER A 358 5 3 HELIX 16 16 ASP A 359 ASN A 373 1 15 HELIX 17 17 THR A 378 GLY A 384 1 7 SHEET 1 A 3 HIS A 28 PHE A 34 0 SHEET 2 A 3 CYS A 132 LEU A 137 -1 O VAL A 133 N MET A 33 SHEET 3 A 3 VAL A 126 ALA A 129 -1 N GLN A 127 O PHE A 134 SHEET 1 B 3 LYS A 44 LEU A 48 0 SHEET 2 B 3 GLU A 51 ILE A 58 -1 O LEU A 53 N LEU A 46 SHEET 3 B 3 LYS A 61 LYS A 66 -1 O LYS A 61 N ILE A 58 SHEET 1 C 3 THR A 87 THR A 89 0 SHEET 2 C 3 TRP A 95 ARG A 98 -1 O TYR A 97 N ILE A 88 SHEET 3 C 3 LEU A 104 ILE A 107 -1 O ASP A 106 N THR A 96 SHEET 1 D 7 MET A 158 ILE A 167 0 SHEET 2 D 7 THR A 293 PRO A 303 -1 O LEU A 300 N LEU A 161 SHEET 3 D 7 MET A 281 ASP A 290 -1 N MET A 281 O GLY A 301 SHEET 4 D 7 VAL A 269 ASN A 273 -1 N LEU A 270 O GLU A 284 SHEET 5 D 7 ASP A 261 TRP A 265 -1 N SER A 263 O LYS A 271 SHEET 6 D 7 GLY A 226 ASP A 229 -1 N ASP A 229 O ILE A 262 SHEET 7 D 7 THR A 214 VAL A 217 -1 N VAL A 217 O GLY A 226 SHEET 1 E 2 ALA A 199 LEU A 200 0 SHEET 2 E 2 ALA A 252 TYR A 253 -1 O ALA A 252 N LEU A 200 SHEET 1 F 2 GLY A 203 ALA A 205 0 SHEET 2 F 2 VAL A 236 VAL A 238 -1 O VAL A 236 N ALA A 205 SHEET 1 G 2 GLU A 240 ILE A 243 0 SHEET 2 G 2 GLU A 246 GLU A 250 -1 O ARG A 249 N GLY A 241 LINK SG CYS A 69 FE1 FES A 401 1555 1555 2.31 LINK ND1 HIS A 71 FE2 FES A 401 1555 1555 2.14 LINK SG CYS A 90 FE1 FES A 401 1555 1555 2.29 LINK ND1 HIS A 93 FE2 FES A 401 1555 1555 2.13 LINK NE2 HIS A 183 FE FE2 A 501 1555 1555 2.09 LINK NE2 HIS A 187 FE FE2 A 501 1555 1555 2.00 LINK OD1 ASP A 333 FE FE2 A 501 1555 1555 1.96 LINK OD2 ASP A 333 FE FE2 A 501 1555 1555 2.59 LINK FE FE2 A 501 O HOH A 631 1555 1555 1.90 CISPEP 1 LEU A 266 PRO A 267 0 0.91 CISPEP 2 ASN A 273 PRO A 274 0 -1.28 CISPEP 3 PHE A 275 PRO A 276 0 -0.14 SITE 1 AC1 4 HIS A 183 HIS A 187 ASP A 333 HOH A 631 SITE 1 AC2 6 CYS A 69 HIS A 71 ARG A 72 CYS A 90 SITE 2 AC2 6 HIS A 93 TRP A 95 CRYST1 131.914 131.914 131.914 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007581 0.00000