data_1WX9 # _entry.id 1WX9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WX9 pdb_00001wx9 10.2210/pdb1wx9/pdb RCSB RCSB024109 ? ? WWPDB D_1000024109 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002005121.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WX9 _pdbx_database_status.recvd_initial_deposition_date 2005-01-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, C.' 1 'Saito, K.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution Structure of the N-terminal Ubiquitin-like Domain in the Human BAT3 Protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, C.' 1 ? primary 'Saito, K.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'HLA-B associated transcript-3 isoform b' _entity.formula_weight 9296.517 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'ubiquitin-like domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name BAT3 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAP SGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAP SGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002005121.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 GLU n 1 10 VAL n 1 11 LEU n 1 12 VAL n 1 13 LYS n 1 14 THR n 1 15 LEU n 1 16 ASP n 1 17 SER n 1 18 GLN n 1 19 THR n 1 20 ARG n 1 21 THR n 1 22 PHE n 1 23 ILE n 1 24 VAL n 1 25 GLY n 1 26 ALA n 1 27 GLN n 1 28 MET n 1 29 ASN n 1 30 VAL n 1 31 LYS n 1 32 GLU n 1 33 PHE n 1 34 LYS n 1 35 GLU n 1 36 HIS n 1 37 ILE n 1 38 ALA n 1 39 ALA n 1 40 SER n 1 41 VAL n 1 42 SER n 1 43 ILE n 1 44 PRO n 1 45 SER n 1 46 GLU n 1 47 LYS n 1 48 GLN n 1 49 ARG n 1 50 LEU n 1 51 ILE n 1 52 TYR n 1 53 GLN n 1 54 GLY n 1 55 ARG n 1 56 VAL n 1 57 LEU n 1 58 GLN n 1 59 ASP n 1 60 ASP n 1 61 LYS n 1 62 LYS n 1 63 LEU n 1 64 GLN n 1 65 GLU n 1 66 TYR n 1 67 ASN n 1 68 VAL n 1 69 GLY n 1 70 GLY n 1 71 LYS n 1 72 VAL n 1 73 ILE n 1 74 HIS n 1 75 LEU n 1 76 VAL n 1 77 GLU n 1 78 ARG n 1 79 ALA n 1 80 PRO n 1 81 SER n 1 82 GLY n 1 83 PRO n 1 84 SER n 1 85 SER n 1 86 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene BAT3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040921-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5STX1_HUMAN _struct_ref.pdbx_db_accession Q5STX1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAP _struct_ref.pdbx_align_begin 17 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WX9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 80 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5STX1 _struct_ref_seq.db_align_beg 17 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 89 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 80 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WX9 GLY A 1 ? UNP Q5STX1 ? ? 'cloning artifact' 1 1 1 1WX9 SER A 2 ? UNP Q5STX1 ? ? 'cloning artifact' 2 2 1 1WX9 SER A 3 ? UNP Q5STX1 ? ? 'cloning artifact' 3 3 1 1WX9 GLY A 4 ? UNP Q5STX1 ? ? 'cloning artifact' 4 4 1 1WX9 SER A 5 ? UNP Q5STX1 ? ? 'cloning artifact' 5 5 1 1WX9 SER A 6 ? UNP Q5STX1 ? ? 'cloning artifact' 6 6 1 1WX9 GLY A 7 ? UNP Q5STX1 ? ? 'cloning artifact' 7 7 1 1WX9 SER A 81 ? UNP Q5STX1 ? ? 'cloning artifact' 81 8 1 1WX9 GLY A 82 ? UNP Q5STX1 ? ? 'cloning artifact' 82 9 1 1WX9 PRO A 83 ? UNP Q5STX1 ? ? 'cloning artifact' 83 10 1 1WX9 SER A 84 ? UNP Q5STX1 ? ? 'cloning artifact' 84 11 1 1WX9 SER A 85 ? UNP Q5STX1 ? ? 'cloning artifact' 85 12 1 1WX9 GLY A 86 ? UNP Q5STX1 ? ? 'cloning artifact' 86 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 3D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.23mM protein U-15N, 13C, 20mM d-Tris-HCl, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1WX9 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WX9 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WX9 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B. A.' 3 KUJIRA 0.921 'data analysis' 'Kobayashi, N.' 4 CYANA 1.0.8 'structure solution' 'Guentert, P.' 5 CYANA 1.0.8 refinement 'Guentert, P.' 6 # _exptl.entry_id 1WX9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1WX9 _struct.title 'Solution Structure of the N-terminal Ubiquitin-like Domain in the Human BAT3 Protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WX9 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'ubiquitin-like domain, BAT3 protein, Structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 30 ? VAL A 41 ? VAL A 30 VAL A 41 1 ? 12 HELX_P HELX_P2 2 LEU A 63 ? TYR A 66 ? LEU A 63 TYR A 66 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 19 ? VAL A 24 ? THR A 19 VAL A 24 A 2 LEU A 8 ? LYS A 13 ? LEU A 8 LYS A 13 A 3 LYS A 71 ? HIS A 74 ? LYS A 71 HIS A 74 B 1 ILE A 51 ? TYR A 52 ? ILE A 51 TYR A 52 B 2 ARG A 55 ? VAL A 56 ? ARG A 55 VAL A 56 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 22 ? O PHE A 22 N VAL A 10 ? N VAL A 10 A 2 3 N LYS A 13 ? N LYS A 13 O HIS A 74 ? O HIS A 74 B 1 2 N TYR A 52 ? N TYR A 52 O ARG A 55 ? O ARG A 55 # _database_PDB_matrix.entry_id 1WX9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WX9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 MET 28 28 28 MET MET A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 HIS 74 74 74 HIS HIS A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 GLY 86 86 86 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX Determination method: Author determined ; 700 ;SHEET Determination method: Author determined ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLU 9 ? ? H A GLY 70 ? ? 1.53 2 1 H A GLN 58 ? ? OH A TYR 66 ? ? 1.53 3 2 H A GLN 58 ? ? OH A TYR 66 ? ? 1.51 4 3 H A GLN 58 ? ? OH A TYR 66 ? ? 1.55 5 4 H A GLN 58 ? ? OH A TYR 66 ? ? 1.51 6 4 O A GLU 9 ? ? H A GLY 70 ? ? 1.57 7 5 H A GLN 58 ? ? OH A TYR 66 ? ? 1.53 8 6 H A GLN 58 ? ? OH A TYR 66 ? ? 1.52 9 6 H A VAL 10 ? ? O A PHE 22 ? ? 1.57 10 6 O A GLU 9 ? ? H A GLY 70 ? ? 1.58 11 7 H A VAL 10 ? ? O A PHE 22 ? ? 1.57 12 9 H A GLN 58 ? ? OH A TYR 66 ? ? 1.54 13 10 H A GLN 58 ? ? OH A TYR 66 ? ? 1.57 14 10 O A LYS 34 ? ? H A ALA 38 ? ? 1.59 15 11 H A GLN 58 ? ? OH A TYR 66 ? ? 1.53 16 12 H A GLN 58 ? ? OH A TYR 66 ? ? 1.54 17 13 H A GLN 58 ? ? OH A TYR 66 ? ? 1.54 18 14 OD1 A ASN 29 ? ? H A GLU 32 ? ? 1.53 19 14 O A LYS 34 ? ? HE22 A GLN 48 ? ? 1.60 20 15 H A GLN 58 ? ? OH A TYR 66 ? ? 1.55 21 16 O A GLU 9 ? ? H A GLY 70 ? ? 1.58 22 17 O A GLU 9 ? ? H A GLY 70 ? ? 1.56 23 17 H A GLN 58 ? ? OH A TYR 66 ? ? 1.59 24 18 H A VAL 30 ? ? O A LYS 61 ? ? 1.51 25 18 O A LEU 63 ? ? H A TYR 66 ? ? 1.56 26 19 H A GLN 58 ? ? OH A TYR 66 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 55.53 97.06 2 1 LEU A 15 ? ? -89.58 44.40 3 1 ASP A 16 ? ? -161.99 34.56 4 1 SER A 17 ? ? 42.09 75.94 5 1 MET A 28 ? ? -38.13 148.71 6 1 ARG A 49 ? ? -174.35 81.49 7 1 ASN A 67 ? ? 81.47 47.40 8 1 ALA A 79 ? ? 60.57 162.63 9 1 SER A 85 ? ? 62.22 95.25 10 2 SER A 6 ? ? 51.71 86.58 11 2 THR A 14 ? ? -78.90 -162.66 12 2 LEU A 15 ? ? -91.34 53.07 13 2 ASP A 16 ? ? -157.07 26.15 14 2 SER A 17 ? ? 39.48 62.88 15 2 MET A 28 ? ? -37.33 152.28 16 2 ARG A 49 ? ? -165.07 81.41 17 2 GLN A 53 ? ? 67.04 -66.44 18 2 SER A 81 ? ? -148.88 -71.06 19 2 SER A 84 ? ? -126.49 -62.70 20 3 SER A 6 ? ? 176.56 157.50 21 3 ASP A 16 ? ? -177.76 36.74 22 3 SER A 17 ? ? 38.84 72.77 23 3 MET A 28 ? ? -37.56 149.56 24 3 ARG A 49 ? ? -162.24 76.60 25 3 SER A 81 ? ? -129.02 -60.11 26 3 SER A 85 ? ? 47.79 94.52 27 4 SER A 2 ? ? 59.79 161.91 28 4 SER A 3 ? ? -142.92 -58.42 29 4 ASP A 16 ? ? -168.73 32.61 30 4 SER A 17 ? ? 41.70 70.83 31 4 MET A 28 ? ? -37.71 146.78 32 4 ARG A 49 ? ? -171.72 76.15 33 4 GLN A 53 ? ? 87.42 -36.47 34 4 ASN A 67 ? ? 71.64 35.84 35 4 SER A 81 ? ? -137.69 -64.65 36 5 SER A 5 ? ? -128.17 -57.83 37 5 SER A 17 ? ? 59.98 71.63 38 5 THR A 19 ? ? -38.76 135.30 39 5 MET A 28 ? ? -38.19 147.05 40 5 ARG A 49 ? ? -166.23 87.40 41 5 GLN A 53 ? ? 86.33 -37.81 42 5 ASN A 67 ? ? 79.88 46.73 43 5 ALA A 79 ? ? 66.33 160.55 44 6 SER A 2 ? ? 63.93 128.70 45 6 SER A 3 ? ? -125.27 -61.13 46 6 THR A 14 ? ? -114.01 -169.16 47 6 MET A 28 ? ? -37.23 148.18 48 6 SER A 42 ? ? 74.06 32.08 49 6 ARG A 49 ? ? -169.15 76.56 50 6 ARG A 78 ? ? -47.94 152.86 51 6 ALA A 79 ? ? -168.26 106.19 52 6 SER A 81 ? ? -167.75 -60.66 53 6 SER A 85 ? ? -170.39 -58.87 54 7 SER A 2 ? ? -41.71 153.16 55 7 ASP A 16 ? ? -174.97 35.54 56 7 SER A 17 ? ? 38.60 68.55 57 7 MET A 28 ? ? -36.93 150.96 58 7 ARG A 49 ? ? -178.81 76.16 59 7 GLN A 53 ? ? 68.09 -66.64 60 7 SER A 81 ? ? -51.57 107.68 61 7 SER A 85 ? ? 60.30 111.62 62 8 SER A 3 ? ? -175.07 113.81 63 8 THR A 14 ? ? -124.71 -167.27 64 8 MET A 28 ? ? -37.24 154.41 65 8 ARG A 49 ? ? -168.59 74.27 66 8 GLN A 53 ? ? 71.30 -65.50 67 8 ARG A 78 ? ? -48.08 161.43 68 9 ASP A 16 ? ? -174.17 35.42 69 9 SER A 17 ? ? 39.31 74.97 70 9 GLN A 18 ? ? -150.73 88.08 71 9 MET A 28 ? ? -37.02 145.99 72 9 ARG A 49 ? ? -157.88 85.28 73 9 GLN A 53 ? ? 69.27 -63.87 74 9 ASN A 67 ? ? 81.53 47.76 75 9 ARG A 78 ? ? -51.06 171.91 76 9 ALA A 79 ? ? 68.92 153.57 77 10 SER A 2 ? ? 178.08 149.81 78 10 LEU A 15 ? ? -87.72 46.67 79 10 ASP A 16 ? ? -160.33 28.16 80 10 MET A 28 ? ? -36.87 153.45 81 10 ARG A 49 ? ? -165.28 78.60 82 10 GLN A 53 ? ? 66.33 -68.23 83 10 ALA A 79 ? ? 61.44 105.43 84 11 SER A 2 ? ? 63.40 133.61 85 11 SER A 5 ? ? -145.67 -57.98 86 11 LEU A 15 ? ? -90.39 45.84 87 11 ASP A 16 ? ? -159.29 32.48 88 11 SER A 17 ? ? 43.18 78.30 89 11 GLN A 18 ? ? -156.20 84.23 90 11 MET A 28 ? ? -37.22 150.06 91 11 ARG A 49 ? ? -163.84 75.06 92 11 GLN A 53 ? ? 66.71 -67.43 93 11 ASN A 67 ? ? 80.22 46.07 94 11 ARG A 78 ? ? -64.09 -175.91 95 11 SER A 81 ? ? -126.69 -58.41 96 12 SER A 2 ? ? 59.40 70.61 97 12 SER A 3 ? ? 76.81 124.08 98 12 SER A 5 ? ? 57.55 107.36 99 12 SER A 6 ? ? 59.55 74.06 100 12 LEU A 15 ? ? -94.80 48.32 101 12 ASP A 16 ? ? -161.92 30.72 102 12 MET A 28 ? ? -37.65 147.61 103 12 ARG A 49 ? ? -159.16 81.77 104 12 ASN A 67 ? ? 79.37 46.07 105 12 ARG A 78 ? ? -49.06 108.20 106 12 ALA A 79 ? ? 63.07 152.95 107 12 SER A 84 ? ? 43.46 92.75 108 13 SER A 5 ? ? -163.69 -56.77 109 13 THR A 14 ? ? -73.47 -165.14 110 13 LEU A 15 ? ? -96.31 55.54 111 13 ASP A 16 ? ? -173.82 35.79 112 13 SER A 17 ? ? 40.25 73.15 113 13 ARG A 49 ? ? -162.33 84.60 114 13 GLN A 53 ? ? 68.57 -64.35 115 13 ASN A 67 ? ? 81.72 42.99 116 13 SER A 85 ? ? 62.75 124.29 117 14 SER A 2 ? ? 54.10 101.43 118 14 SER A 5 ? ? -161.88 86.63 119 14 SER A 17 ? ? 79.12 48.89 120 14 MET A 28 ? ? -38.89 149.05 121 14 ARG A 49 ? ? -166.66 73.79 122 14 GLN A 53 ? ? 73.30 -65.25 123 14 ASN A 67 ? ? 78.22 44.99 124 14 ARG A 78 ? ? 47.59 -175.51 125 14 SER A 81 ? ? 40.57 89.58 126 14 SER A 85 ? ? 60.48 -93.08 127 15 SER A 2 ? ? 43.61 89.39 128 15 SER A 5 ? ? -176.90 -58.93 129 15 ASP A 16 ? ? -163.95 32.06 130 15 SER A 17 ? ? 39.60 78.65 131 15 GLN A 18 ? ? -166.20 117.33 132 15 MET A 28 ? ? -36.95 145.51 133 15 ARG A 49 ? ? -166.08 82.15 134 15 GLN A 53 ? ? 84.78 -39.57 135 15 ASN A 67 ? ? 81.69 46.32 136 15 VAL A 68 ? ? -92.58 33.90 137 16 SER A 5 ? ? 47.88 94.35 138 16 ASP A 16 ? ? -173.28 34.98 139 16 SER A 17 ? ? 39.19 68.23 140 16 MET A 28 ? ? -37.80 149.72 141 16 ARG A 49 ? ? -161.88 74.18 142 16 GLN A 53 ? ? 73.34 -64.80 143 16 ASN A 67 ? ? 77.26 42.31 144 16 SER A 81 ? ? 175.60 155.70 145 17 SER A 2 ? ? -152.37 -57.48 146 17 SER A 5 ? ? -169.64 113.49 147 17 SER A 6 ? ? 61.63 80.07 148 17 ASP A 16 ? ? -175.43 35.93 149 17 SER A 17 ? ? 39.62 72.82 150 17 MET A 28 ? ? -37.54 155.49 151 17 ARG A 49 ? ? -159.73 79.36 152 17 GLN A 53 ? ? 83.50 -37.99 153 17 ASN A 67 ? ? 81.55 40.95 154 17 SER A 81 ? ? 56.51 79.96 155 17 SER A 84 ? ? 49.09 -93.53 156 18 SER A 3 ? ? 61.63 123.53 157 18 SER A 5 ? ? -170.26 109.58 158 18 SER A 6 ? ? -45.78 166.48 159 18 SER A 17 ? ? 76.15 60.81 160 18 THR A 19 ? ? -38.83 124.16 161 18 MET A 28 ? ? -38.91 150.25 162 18 ARG A 49 ? ? -155.58 84.56 163 18 GLN A 53 ? ? 81.38 -43.96 164 18 ASN A 67 ? ? 76.36 49.38 165 18 VAL A 68 ? ? -92.83 31.25 166 18 SER A 85 ? ? 57.49 165.36 167 19 SER A 2 ? ? -172.74 -58.67 168 19 SER A 5 ? ? 59.85 156.79 169 19 ASP A 16 ? ? -168.66 34.07 170 19 SER A 17 ? ? 39.17 66.44 171 19 MET A 28 ? ? -36.18 149.37 172 19 ARG A 49 ? ? -163.27 89.24 173 19 GLN A 53 ? ? 71.46 -63.49 174 19 ASN A 67 ? ? 81.92 45.34 175 19 VAL A 68 ? ? -92.84 31.15 176 19 SER A 84 ? ? 59.98 109.38 177 20 ASP A 16 ? ? -169.87 33.02 178 20 SER A 17 ? ? 38.58 55.83 179 20 MET A 28 ? ? -37.13 148.28 180 20 ARG A 49 ? ? -168.70 77.14 181 20 GLN A 53 ? ? 66.63 -68.67 182 20 ASN A 67 ? ? 77.74 49.60 183 20 ARG A 78 ? ? -40.75 158.46 184 20 SER A 81 ? ? 45.09 85.94 185 20 SER A 84 ? ? -160.18 89.04 186 20 SER A 85 ? ? -132.54 -59.08 #