HEADER HYDROLASE 02-FEB-05 1WXY TITLE CRYSTAL STRUCTURE OF ADENOSINE DEAMINASE LIGATED WITH A POTENT TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENOSINE AMINOHYDROLASE; COMPND 5 EC: 3.5.4.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: INTESTINE KEYWDS BETA BAREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KINOSHITA REVDAT 4 13-MAR-24 1WXY 1 REMARK LINK REVDAT 3 11-OCT-17 1WXY 1 REMARK REVDAT 2 24-FEB-09 1WXY 1 VERSN REVDAT 1 16-AUG-05 1WXY 0 JRNL AUTH T.KINOSHITA,I.NAKANISHI,T.TERASAKA,M.KUNO,N.SEKI,M.WARIZAYA, JRNL AUTH 2 H.MATSUMURA,T.INOUE,K.TAKANO,H.ADACHI,Y.MORI,T.FUJII JRNL TITL STRUCTURAL BASIS OF COMPOUND RECOGNITION BY ADENOSINE JRNL TITL 2 DEAMINASE JRNL REF BIOCHEMISTRY V. 44 10562 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16060665 JRNL DOI 10.1021/BI050529E REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNX 2002 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN,ACCELRYS REMARK 3 : SOFTWARE INC.(BADGER,BERARD,KUMAR,SZALMA, REMARK 3 : YIP,DZAKULA) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1744054.710 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 14524 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2239 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 126 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2789 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.19000 REMARK 3 B22 (A**2) : 2.19000 REMARK 3 B33 (A**2) : -4.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.024 REMARK 3 BOND ANGLES (DEGREES) : 3.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.970 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.210 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 23.960; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 14.110; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARMSTD.XPL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000024134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL24XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8266 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14422 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PEG400, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.06500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.43500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.59750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.43500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.53250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.43500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.43500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 100.59750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.43500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.43500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.53250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 MET A 353 REMARK 465 PRO A 354 REMARK 465 SER A 355 REMARK 465 PRO A 356 REMARK 465 ALA A 357 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 592 O HOH A 625 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 15 CG HIS A 15 CD2 0.057 REMARK 500 ARG A 101 NE ARG A 101 CZ 0.092 REMARK 500 ARG A 173 NE ARG A 173 CZ 0.092 REMARK 500 VAL A 213 CA VAL A 213 CB 0.127 REMARK 500 HIS A 241 CG HIS A 241 CD2 0.073 REMARK 500 GLU A 260 CD GLU A 260 OE1 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 29 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ALA A 40 CB - CA - C ANGL. DEV. = -9.1 DEGREES REMARK 500 ILE A 50 CA - CB - CG1 ANGL. DEV. = 14.2 DEGREES REMARK 500 THR A 57 CA - CB - CG2 ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 76 N - CA - CB ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 81 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 MET A 89 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 VAL A 95 CA - CB - CG1 ANGL. DEV. = 10.1 DEGREES REMARK 500 TYR A 97 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TYR A 97 CB - CG - CD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR A 97 CG - CD1 - CE1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TYR A 102 CB - CG - CD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 GLY A 122 C - N - CA ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 149 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL A 166 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 VAL A 166 CG1 - CB - CG2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 181 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 SER A 192 CB - CA - C ANGL. DEV. = -11.9 DEGREES REMARK 500 PHE A 194 CB - CG - CD2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLY A 216 C - N - CA ANGL. DEV. = -16.3 DEGREES REMARK 500 VAL A 218 CG1 - CB - CG2 ANGL. DEV. = 9.7 DEGREES REMARK 500 TYR A 249 CB - CG - CD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 251 CD - NE - CZ ANGL. DEV. = -9.5 DEGREES REMARK 500 TYR A 267 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 282 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU A 325 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 TYR A 348 CB - CG - CD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 TYR A 348 CG - CD1 - CE1 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 54.35 -92.11 REMARK 500 ALA A 37 96.39 -69.92 REMARK 500 PRO A 39 48.76 -86.04 REMARK 500 ALA A 40 160.15 152.90 REMARK 500 ILE A 50 34.58 -70.53 REMARK 500 ASP A 53 12.47 -149.02 REMARK 500 PRO A 55 104.81 -26.88 REMARK 500 TYR A 67 -77.74 -67.71 REMARK 500 ARG A 76 -51.63 -24.73 REMARK 500 PRO A 104 -70.85 -44.13 REMARK 500 HIS A 105 -50.92 -23.48 REMARK 500 GLU A 121 -162.34 -45.74 REMARK 500 TYR A 172 41.33 -109.50 REMARK 500 GLU A 174 -22.95 49.58 REMARK 500 GLN A 175 47.94 -90.61 REMARK 500 ASP A 185 87.44 -56.63 REMARK 500 GLU A 186 3.38 -68.35 REMARK 500 HIS A 238 -73.17 92.88 REMARK 500 LEU A 268 0.37 -67.22 REMARK 500 GLU A 277 86.64 -30.09 REMARK 500 HIS A 278 125.92 -38.14 REMARK 500 ASP A 295 -70.93 67.04 REMARK 500 LEU A 298 -73.64 -46.05 REMARK 500 LYS A 301 55.88 34.68 REMARK 500 PRO A 336 159.17 -45.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 56 THR A 57 149.03 REMARK 500 GLU A 167 LEU A 168 147.96 REMARK 500 ARG A 173 GLU A 174 -145.73 REMARK 500 LEU A 236 GLY A 237 147.47 REMARK 500 SER A 266 TYR A 267 147.06 REMARK 500 THR A 276 GLU A 277 149.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 67 0.07 SIDE CHAIN REMARK 500 TYR A 68 0.12 SIDE CHAIN REMARK 500 ARG A 81 0.09 SIDE CHAIN REMARK 500 TYR A 84 0.08 SIDE CHAIN REMARK 500 ARG A 101 0.16 SIDE CHAIN REMARK 500 ARG A 142 0.29 SIDE CHAIN REMARK 500 TYR A 172 0.08 SIDE CHAIN REMARK 500 ARG A 211 0.11 SIDE CHAIN REMARK 500 ARG A 253 0.09 SIDE CHAIN REMARK 500 PHE A 334 0.08 SIDE CHAIN REMARK 500 TYR A 348 0.12 SIDE CHAIN REMARK 500 TYR A 351 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 HIS A 17 NE2 120.3 REMARK 620 3 HIS A 214 NE2 101.5 95.2 REMARK 620 4 ASP A 295 OD2 87.7 91.6 163.8 REMARK 620 5 HOH A 593 O 90.6 145.8 92.2 74.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FRK A 401 DBREF 1WXY A 2 357 UNP P56658 ADA_BOVIN 1 356 SEQADV 1WXY ASP A 8 UNP P56658 ASN 7 SEE REMARK 999 SEQADV 1WXY LYS A 32 UNP P56658 ARG 31 SEE REMARK 999 SEQADV 1WXY ARG A 33 UNP P56658 LYS 32 SEE REMARK 999 SEQADV 1WXY THR A 57 UNP P56658 SER 56 SEE REMARK 999 SEQADV 1WXY ASP A 60 UNP P56658 GLU 59 SEE REMARK 999 SEQADV 1WXY ASP A 77 UNP P56658 GLU 76 SEE REMARK 999 SEQADV 1WXY ILE A 79 UNP P56658 VAL 78 SEE REMARK 999 SEQADV 1WXY GLN A 199 UNP P56658 LYS 198 SEE REMARK 999 SEQADV 1WXY THR A 246 UNP P56658 ALA 245 SEE REMARK 999 SEQADV 1WXY ILE A 261 UNP P56658 VAL 260 SEE REMARK 999 SEQADV 1WXY ALA A 279 UNP P56658 PRO 278 SEE REMARK 999 SEQADV 1WXY ILE A 281 UNP P56658 VAL 280 SEE REMARK 999 SEQADV 1WXY LYS A 313 UNP P56658 ASN 312 SEE REMARK 999 SEQADV 1WXY ASP A 314 UNP P56658 GLU 313 SEE REMARK 999 SEQADV 1WXY ARG A 352 UNP P56658 GLY 351 SEE REMARK 999 SEQRES 1 A 356 ALA GLN THR PRO ALA PHE ASP LYS PRO LYS VAL GLU LEU SEQRES 2 A 356 HIS VAL HIS LEU ASP GLY ALA ILE LYS PRO GLU THR ILE SEQRES 3 A 356 LEU TYR TYR GLY LYS ARG ARG GLY ILE ALA LEU PRO ALA SEQRES 4 A 356 ASP THR PRO GLU GLU LEU GLN ASN ILE ILE GLY MET ASP SEQRES 5 A 356 LYS PRO LEU THR LEU PRO ASP PHE LEU ALA LYS PHE ASP SEQRES 6 A 356 TYR TYR MET PRO ALA ILE ALA GLY CYS ARG ASP ALA ILE SEQRES 7 A 356 LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS ALA LYS SEQRES 8 A 356 ASP GLY VAL VAL TYR VAL GLU VAL ARG TYR SER PRO HIS SEQRES 9 A 356 LEU LEU ALA ASN SER LYS VAL GLU PRO ILE PRO TRP ASN SEQRES 10 A 356 GLN ALA GLU GLY ASP LEU THR PRO ASP GLU VAL VAL SER SEQRES 11 A 356 LEU VAL ASN GLN GLY LEU GLN GLU GLY GLU ARG ASP PHE SEQRES 12 A 356 GLY VAL LYS VAL ARG SER ILE LEU CYS CYS MET ARG HIS SEQRES 13 A 356 GLN PRO SER TRP SER SER GLU VAL VAL GLU LEU CYS LYS SEQRES 14 A 356 LYS TYR ARG GLU GLN THR VAL VAL ALA ILE ASP LEU ALA SEQRES 15 A 356 GLY ASP GLU THR ILE GLU GLY SER SER LEU PHE PRO GLY SEQRES 16 A 356 HIS VAL GLN ALA TYR ALA GLU ALA VAL LYS SER GLY VAL SEQRES 17 A 356 HIS ARG THR VAL HIS ALA GLY GLU VAL GLY SER ALA ASN SEQRES 18 A 356 VAL VAL LYS GLU ALA VAL ASP THR LEU LYS THR GLU ARG SEQRES 19 A 356 LEU GLY HIS GLY TYR HIS THR LEU GLU ASP THR THR LEU SEQRES 20 A 356 TYR ASN ARG LEU ARG GLN GLU ASN MET HIS PHE GLU ILE SEQRES 21 A 356 CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP LYS PRO SEQRES 22 A 356 ASP THR GLU HIS ALA VAL ILE ARG PHE LYS ASN ASP GLN SEQRES 23 A 356 VAL ASN TYR SER LEU ASN THR ASP ASP PRO LEU ILE PHE SEQRES 24 A 356 LYS SER THR LEU ASP THR ASP TYR GLN MET THR LYS LYS SEQRES 25 A 356 ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG LEU ASN SEQRES 26 A 356 ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU ASP GLU SEQRES 27 A 356 LYS LYS GLU LEU LEU ASP LEU LEU TYR LYS ALA TYR ARG SEQRES 28 A 356 MET PRO SER PRO ALA HET ZN A 400 1 HET FRK A 401 27 HETNAM ZN ZINC ION HETNAM FRK N-[4,5-BIS(4-HYDROXYPHENYL)-1,3-THIAZOL-2-YL]HEXANAMIDE HETSYN FRK FR104783 FORMUL 2 ZN ZN 2+ FORMUL 3 FRK C21 H22 N2 O3 S FORMUL 4 HOH *251(H2 O) HELIX 1 1 HIS A 17 ALA A 21 5 5 HELIX 2 2 LYS A 23 GLY A 35 1 13 HELIX 3 3 THR A 42 ILE A 50 1 9 HELIX 4 4 THR A 57 ALA A 73 1 17 HELIX 5 5 CYS A 75 GLY A 94 1 20 HELIX 6 6 SER A 103 ALA A 108 5 6 HELIX 7 7 ILE A 115 GLN A 119 5 5 HELIX 8 8 THR A 125 GLY A 145 1 21 HELIX 9 9 GLN A 158 TYR A 172 1 15 HELIX 10 10 GLY A 190 LEU A 193 5 4 HELIX 11 11 PHE A 194 SER A 207 1 14 HELIX 12 12 SER A 220 THR A 230 1 11 HELIX 13 13 TYR A 240 GLU A 244 5 5 HELIX 14 14 ASP A 245 GLU A 255 1 11 HELIX 15 15 CYS A 262 LEU A 268 1 7 HELIX 16 16 HIS A 278 ASP A 286 1 9 HELIX 17 17 THR A 303 ASP A 314 1 12 HELIX 18 18 THR A 318 SER A 332 1 15 HELIX 19 19 PRO A 336 ARG A 352 1 17 SHEET 1 A 8 LYS A 11 GLU A 13 0 SHEET 2 A 8 VAL A 95 TYR A 102 1 O VAL A 96 N LYS A 11 SHEET 3 A 8 LYS A 147 MET A 155 1 O LYS A 147 N VAL A 96 SHEET 4 A 8 VAL A 177 ALA A 183 1 O ASP A 181 N CYS A 154 SHEET 5 A 8 HIS A 210 ALA A 215 1 O THR A 212 N ILE A 180 SHEET 6 A 8 ARG A 235 HIS A 238 1 O GLY A 237 N VAL A 213 SHEET 7 A 8 HIS A 258 ILE A 261 1 O GLU A 260 N LEU A 236 SHEET 8 A 8 ASN A 289 LEU A 292 1 O ASN A 289 N PHE A 259 LINK NE2 HIS A 15 ZN ZN A 400 1555 1555 1.96 LINK NE2 HIS A 17 ZN ZN A 400 1555 1555 1.94 LINK NE2 HIS A 214 ZN ZN A 400 1555 1555 2.29 LINK OD2 ASP A 295 ZN ZN A 400 1555 1555 2.59 LINK ZN ZN A 400 O HOH A 593 1555 1555 1.90 CISPEP 1 GLU A 113 PRO A 114 0 -1.69 CISPEP 2 GLN A 175 THR A 176 0 7.86 SITE 1 AC1 5 HIS A 15 HIS A 17 HIS A 214 ASP A 295 SITE 2 AC1 5 HOH A 593 SITE 1 AC2 14 ASP A 19 LEU A 58 LEU A 62 PHE A 65 SITE 2 AC2 14 MET A 155 GLY A 184 ASP A 185 GLU A 217 SITE 3 AC2 14 THR A 269 HOH A 427 HOH A 453 HOH A 576 SITE 4 AC2 14 HOH A 589 HOH A 596 CRYST1 76.870 76.870 134.130 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007455 0.00000