HEADER TRANSFERASE 08-FEB-05 1WY7 TITLE CRYSTAL STRUCTURE OF A PUTATIVE RNA METHYLTRANSFERASE PH1948 FROM TITLE 2 PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH1948; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH1948; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS SEVEN-STRANDED BETA SHEET, METHYLTRANSFERASE FOLD, STRUCTURAL KEYWDS 2 GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.G.GAO,M.YAO,I.TANAKA REVDAT 3 13-JUL-11 1WY7 1 VERSN REVDAT 2 24-FEB-09 1WY7 1 VERSN REVDAT 1 13-DEC-05 1WY7 0 JRNL AUTH Y.G.GAO,M.YAO,Z.YONG,I.TANAKA JRNL TITL CRYSTAL STRUCTURE OF THE PUTATIVE RNA METHYLTRANSFERASE JRNL TITL 2 PH1948 FROM PYROCOCCUS HORIKOSHII, IN COMPLEX WITH THE JRNL TITL 3 COPURIFIED S-ADENOSYL-L-HOMOCYSTEINE JRNL REF PROTEINS V. 61 1141 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 16245322 JRNL DOI 10.1002/PROT.20678 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 52329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 5222 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4401 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 500 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6407 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.87300 REMARK 3 B22 (A**2) : -3.07900 REMARK 3 B33 (A**2) : 9.95200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.41700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.39 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.53 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.81 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.505 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.141 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.500 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.324 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : THROUGHOUT REMARK 3 KSOL : 35.04 REMARK 3 BSOL : 54.88 REMARK 3 REMARK 3 NCS MODEL : NCS RESTRAINTS FOR MAIN CHAIN REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; 200 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; 0.3 REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-FEB-05. REMARK 100 THE RCSB ID CODE IS RCSB024143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53514 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 39.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.21800 REMARK 200 R SYM FOR SHELL (I) : 0.21800 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, HEPES-NA, CACL2, PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 103.48750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.57050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 103.48750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.57050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 MSE A 2 REMARK 465 THR A 3 REMARK 465 LEU A 181 REMARK 465 GLN A 182 REMARK 465 PHE A 183 REMARK 465 PHE A 184 REMARK 465 PHE A 185 REMARK 465 ASN A 205 REMARK 465 SER A 206 REMARK 465 ARG A 207 REMARK 465 MSE B 1 REMARK 465 PHE B 183 REMARK 465 PHE B 184 REMARK 465 PHE B 185 REMARK 465 HIS B 186 REMARK 465 ARG B 187 REMARK 465 ASN B 205 REMARK 465 SER B 206 REMARK 465 ARG B 207 REMARK 465 LEU C 181 REMARK 465 GLN C 182 REMARK 465 PHE C 183 REMARK 465 PHE C 184 REMARK 465 PHE C 185 REMARK 465 HIS C 186 REMARK 465 ASN D 205 REMARK 465 SER D 206 REMARK 465 ARG D 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD LYS A 188 O HOH A 1045 0.81 REMARK 500 CG LYS A 188 O HOH A 1045 0.97 REMARK 500 CB LYS A 188 O HOH A 1045 1.80 REMARK 500 CE LYS A 188 O HOH A 1045 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 188 O HOH B 1031 1545 0.54 REMARK 500 CE LYS A 188 O HOH B 1031 1545 1.35 REMARK 500 CD LYS A 188 O HOH B 1031 1545 2.05 REMARK 500 N HIS A 186 OE1 GLN B 125 1545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 186 CB HIS A 186 CG 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 186 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 LEU D 181 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 108.37 -24.85 REMARK 500 ILE A 48 -56.87 -132.71 REMARK 500 ASN A 110 59.41 -152.80 REMARK 500 LYS A 189 149.85 -21.76 REMARK 500 THR B 3 -96.71 -71.65 REMARK 500 ILE B 48 -57.31 -134.03 REMARK 500 ASN B 110 60.15 -152.87 REMARK 500 LYS B 127 122.83 -39.92 REMARK 500 LEU B 181 -70.61 -132.83 REMARK 500 ILE C 48 -52.90 -136.34 REMARK 500 LYS C 96 129.22 -38.24 REMARK 500 ASN C 110 60.64 -154.23 REMARK 500 VAL C 203 -76.38 -31.79 REMARK 500 ASN C 205 -7.25 68.62 REMARK 500 ILE D 48 -51.62 -135.34 REMARK 500 LYS D 96 129.20 -36.65 REMARK 500 ASN D 110 60.68 -155.53 REMARK 500 LYS D 127 120.08 -37.49 REMARK 500 LEU D 181 46.92 38.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1066 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH B1038 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH B1068 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH C1036 DISTANCE = 5.44 ANGSTROMS REMARK 525 HOH C1055 DISTANCE = 6.15 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH D 1004 DBREF 1WY7 A 1 207 UNP O59611 O59611_PYRHO 1 207 DBREF 1WY7 B 1 207 UNP O59611 O59611_PYRHO 1 207 DBREF 1WY7 C 1 207 UNP O59611 O59611_PYRHO 1 207 DBREF 1WY7 D 1 207 UNP O59611 O59611_PYRHO 1 207 SEQADV 1WY7 MSE A 1 UNP O59611 MET 1 MODIFIED RESIDUE SEQADV 1WY7 MSE A 2 UNP O59611 MET 2 MODIFIED RESIDUE SEQADV 1WY7 MSE A 118 UNP O59611 MET 118 MODIFIED RESIDUE SEQADV 1WY7 MSE B 1 UNP O59611 MET 1 MODIFIED RESIDUE SEQADV 1WY7 MSE B 2 UNP O59611 MET 2 MODIFIED RESIDUE SEQADV 1WY7 MSE B 118 UNP O59611 MET 118 MODIFIED RESIDUE SEQADV 1WY7 MSE C 1 UNP O59611 MET 1 MODIFIED RESIDUE SEQADV 1WY7 MSE C 2 UNP O59611 MET 2 MODIFIED RESIDUE SEQADV 1WY7 MSE C 118 UNP O59611 MET 118 MODIFIED RESIDUE SEQADV 1WY7 MSE D 1 UNP O59611 MET 1 MODIFIED RESIDUE SEQADV 1WY7 MSE D 2 UNP O59611 MET 2 MODIFIED RESIDUE SEQADV 1WY7 MSE D 118 UNP O59611 MET 118 MODIFIED RESIDUE SEQRES 1 A 207 MSE MSE THR ARG LYS LYS GLU LEU ALA ILE ALA LEU SER SEQRES 2 A 207 LYS LEU LYS GLY PHE LYS ASN PRO LYS VAL TRP LEU GLU SEQRES 3 A 207 GLN TYR ARG THR PRO GLY ASN ALA ALA SER GLU LEU LEU SEQRES 4 A 207 TRP LEU ALA TYR SER LEU GLY ASP ILE GLU GLY LYS VAL SEQRES 5 A 207 VAL ALA ASP LEU GLY ALA GLY THR GLY VAL LEU SER TYR SEQRES 6 A 207 GLY ALA LEU LEU LEU GLY ALA LYS GLU VAL ILE CYS VAL SEQRES 7 A 207 GLU VAL ASP LYS GLU ALA VAL ASP VAL LEU ILE GLU ASN SEQRES 8 A 207 LEU GLY GLU PHE LYS GLY LYS PHE LYS VAL PHE ILE GLY SEQRES 9 A 207 ASP VAL SER GLU PHE ASN SER ARG VAL ASP ILE VAL ILE SEQRES 10 A 207 MSE ASN PRO PRO PHE GLY SER GLN ARG LYS HIS ALA ASP SEQRES 11 A 207 ARG PRO PHE LEU LEU LYS ALA PHE GLU ILE SER ASP VAL SEQRES 12 A 207 VAL TYR SER ILE HIS LEU ALA LYS PRO GLU VAL ARG ARG SEQRES 13 A 207 PHE ILE GLU LYS PHE SER TRP GLU HIS GLY PHE VAL VAL SEQRES 14 A 207 THR HIS ARG LEU THR THR LYS ILE GLU ILE PRO LEU GLN SEQRES 15 A 207 PHE PHE PHE HIS ARG LYS LYS LEU GLU ARG ILE THR VAL SEQRES 16 A 207 ASP ILE TYR ARG PHE SER LYS VAL ILE ASN SER ARG SEQRES 1 B 207 MSE MSE THR ARG LYS LYS GLU LEU ALA ILE ALA LEU SER SEQRES 2 B 207 LYS LEU LYS GLY PHE LYS ASN PRO LYS VAL TRP LEU GLU SEQRES 3 B 207 GLN TYR ARG THR PRO GLY ASN ALA ALA SER GLU LEU LEU SEQRES 4 B 207 TRP LEU ALA TYR SER LEU GLY ASP ILE GLU GLY LYS VAL SEQRES 5 B 207 VAL ALA ASP LEU GLY ALA GLY THR GLY VAL LEU SER TYR SEQRES 6 B 207 GLY ALA LEU LEU LEU GLY ALA LYS GLU VAL ILE CYS VAL SEQRES 7 B 207 GLU VAL ASP LYS GLU ALA VAL ASP VAL LEU ILE GLU ASN SEQRES 8 B 207 LEU GLY GLU PHE LYS GLY LYS PHE LYS VAL PHE ILE GLY SEQRES 9 B 207 ASP VAL SER GLU PHE ASN SER ARG VAL ASP ILE VAL ILE SEQRES 10 B 207 MSE ASN PRO PRO PHE GLY SER GLN ARG LYS HIS ALA ASP SEQRES 11 B 207 ARG PRO PHE LEU LEU LYS ALA PHE GLU ILE SER ASP VAL SEQRES 12 B 207 VAL TYR SER ILE HIS LEU ALA LYS PRO GLU VAL ARG ARG SEQRES 13 B 207 PHE ILE GLU LYS PHE SER TRP GLU HIS GLY PHE VAL VAL SEQRES 14 B 207 THR HIS ARG LEU THR THR LYS ILE GLU ILE PRO LEU GLN SEQRES 15 B 207 PHE PHE PHE HIS ARG LYS LYS LEU GLU ARG ILE THR VAL SEQRES 16 B 207 ASP ILE TYR ARG PHE SER LYS VAL ILE ASN SER ARG SEQRES 1 C 207 MSE MSE THR ARG LYS LYS GLU LEU ALA ILE ALA LEU SER SEQRES 2 C 207 LYS LEU LYS GLY PHE LYS ASN PRO LYS VAL TRP LEU GLU SEQRES 3 C 207 GLN TYR ARG THR PRO GLY ASN ALA ALA SER GLU LEU LEU SEQRES 4 C 207 TRP LEU ALA TYR SER LEU GLY ASP ILE GLU GLY LYS VAL SEQRES 5 C 207 VAL ALA ASP LEU GLY ALA GLY THR GLY VAL LEU SER TYR SEQRES 6 C 207 GLY ALA LEU LEU LEU GLY ALA LYS GLU VAL ILE CYS VAL SEQRES 7 C 207 GLU VAL ASP LYS GLU ALA VAL ASP VAL LEU ILE GLU ASN SEQRES 8 C 207 LEU GLY GLU PHE LYS GLY LYS PHE LYS VAL PHE ILE GLY SEQRES 9 C 207 ASP VAL SER GLU PHE ASN SER ARG VAL ASP ILE VAL ILE SEQRES 10 C 207 MSE ASN PRO PRO PHE GLY SER GLN ARG LYS HIS ALA ASP SEQRES 11 C 207 ARG PRO PHE LEU LEU LYS ALA PHE GLU ILE SER ASP VAL SEQRES 12 C 207 VAL TYR SER ILE HIS LEU ALA LYS PRO GLU VAL ARG ARG SEQRES 13 C 207 PHE ILE GLU LYS PHE SER TRP GLU HIS GLY PHE VAL VAL SEQRES 14 C 207 THR HIS ARG LEU THR THR LYS ILE GLU ILE PRO LEU GLN SEQRES 15 C 207 PHE PHE PHE HIS ARG LYS LYS LEU GLU ARG ILE THR VAL SEQRES 16 C 207 ASP ILE TYR ARG PHE SER LYS VAL ILE ASN SER ARG SEQRES 1 D 207 MSE MSE THR ARG LYS LYS GLU LEU ALA ILE ALA LEU SER SEQRES 2 D 207 LYS LEU LYS GLY PHE LYS ASN PRO LYS VAL TRP LEU GLU SEQRES 3 D 207 GLN TYR ARG THR PRO GLY ASN ALA ALA SER GLU LEU LEU SEQRES 4 D 207 TRP LEU ALA TYR SER LEU GLY ASP ILE GLU GLY LYS VAL SEQRES 5 D 207 VAL ALA ASP LEU GLY ALA GLY THR GLY VAL LEU SER TYR SEQRES 6 D 207 GLY ALA LEU LEU LEU GLY ALA LYS GLU VAL ILE CYS VAL SEQRES 7 D 207 GLU VAL ASP LYS GLU ALA VAL ASP VAL LEU ILE GLU ASN SEQRES 8 D 207 LEU GLY GLU PHE LYS GLY LYS PHE LYS VAL PHE ILE GLY SEQRES 9 D 207 ASP VAL SER GLU PHE ASN SER ARG VAL ASP ILE VAL ILE SEQRES 10 D 207 MSE ASN PRO PRO PHE GLY SER GLN ARG LYS HIS ALA ASP SEQRES 11 D 207 ARG PRO PHE LEU LEU LYS ALA PHE GLU ILE SER ASP VAL SEQRES 12 D 207 VAL TYR SER ILE HIS LEU ALA LYS PRO GLU VAL ARG ARG SEQRES 13 D 207 PHE ILE GLU LYS PHE SER TRP GLU HIS GLY PHE VAL VAL SEQRES 14 D 207 THR HIS ARG LEU THR THR LYS ILE GLU ILE PRO LEU GLN SEQRES 15 D 207 PHE PHE PHE HIS ARG LYS LYS LEU GLU ARG ILE THR VAL SEQRES 16 D 207 ASP ILE TYR ARG PHE SER LYS VAL ILE ASN SER ARG MODRES 1WY7 MSE A 118 MET SELENOMETHIONINE MODRES 1WY7 MSE B 2 MET SELENOMETHIONINE MODRES 1WY7 MSE B 118 MET SELENOMETHIONINE MODRES 1WY7 MSE C 1 MET SELENOMETHIONINE MODRES 1WY7 MSE C 2 MET SELENOMETHIONINE MODRES 1WY7 MSE C 118 MET SELENOMETHIONINE MODRES 1WY7 MSE D 1 MET SELENOMETHIONINE MODRES 1WY7 MSE D 2 MET SELENOMETHIONINE MODRES 1WY7 MSE D 118 MET SELENOMETHIONINE HET MSE A 118 8 HET MSE B 2 8 HET MSE B 118 8 HET MSE C 1 8 HET MSE C 2 8 HET MSE C 118 8 HET MSE D 1 8 HET MSE D 2 8 HET MSE D 118 8 HET SAH A1001 26 HET SAH B1002 26 HET SAH C1003 26 HET SAH D1004 26 HETNAM MSE SELENOMETHIONINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 5 SAH 4(C14 H20 N6 O5 S) FORMUL 9 HOH *312(H2 O) HELIX 1 1 LYS A 5 LYS A 14 1 10 HELIX 2 2 LYS A 22 GLU A 26 5 5 HELIX 3 3 PRO A 31 LEU A 45 1 15 HELIX 4 4 GLY A 61 LEU A 70 1 10 HELIX 5 5 ASP A 81 LEU A 92 1 12 HELIX 6 6 GLY A 93 LYS A 96 5 4 HELIX 7 7 ASP A 105 PHE A 109 5 5 HELIX 8 8 ASP A 130 SER A 141 1 12 HELIX 9 9 LYS A 151 HIS A 165 1 15 HELIX 10 10 MSE B 2 LYS B 14 1 13 HELIX 11 11 LYS B 22 GLU B 26 5 5 HELIX 12 12 PRO B 31 LEU B 45 1 15 HELIX 13 13 GLY B 61 LEU B 70 1 10 HELIX 14 14 ASP B 81 LEU B 92 1 12 HELIX 15 15 GLY B 93 LYS B 96 5 4 HELIX 16 16 ASP B 105 PHE B 109 5 5 HELIX 17 17 ASP B 130 SER B 141 1 12 HELIX 18 18 LYS B 151 HIS B 165 1 15 HELIX 19 19 THR C 3 LYS C 14 1 12 HELIX 20 20 LYS C 22 GLU C 26 5 5 HELIX 21 21 PRO C 31 LEU C 45 1 15 HELIX 22 22 GLY C 61 LEU C 70 1 10 HELIX 23 23 ASP C 81 LEU C 92 1 12 HELIX 24 24 GLY C 93 LYS C 96 5 4 HELIX 25 25 ASP C 105 PHE C 109 5 5 HELIX 26 26 ASP C 130 SER C 141 1 12 HELIX 27 27 LYS C 151 HIS C 165 1 15 HELIX 28 28 THR D 3 LYS D 14 1 12 HELIX 29 29 LYS D 22 GLU D 26 5 5 HELIX 30 30 PRO D 31 LEU D 45 1 15 HELIX 31 31 GLY D 61 LEU D 70 1 10 HELIX 32 32 ASP D 81 LEU D 92 1 12 HELIX 33 33 GLY D 93 LYS D 96 5 4 HELIX 34 34 ASP D 105 PHE D 109 5 5 HELIX 35 35 ASP D 130 SER D 141 1 12 HELIX 36 36 LYS D 151 HIS D 165 1 15 SHEET 1 A14 PHE A 99 ILE A 103 0 SHEET 2 A14 GLU A 74 GLU A 79 1 N CYS A 77 O PHE A 102 SHEET 3 A14 VAL A 52 LEU A 56 1 N VAL A 53 O ILE A 76 SHEET 4 A14 ILE A 115 MSE A 118 1 O ILE A 115 N ALA A 54 SHEET 5 A14 VAL A 143 LEU A 149 1 O TYR A 145 N VAL A 116 SHEET 6 A14 GLU A 191 LYS A 202 -1 O PHE A 200 N VAL A 144 SHEET 7 A14 PHE A 167 ILE A 179 -1 N LEU A 173 O ILE A 197 SHEET 8 A14 PHE C 167 ILE C 179 -1 O THR C 170 N THR A 174 SHEET 9 A14 GLU C 191 LYS C 202 -1 O ILE C 197 N LEU C 173 SHEET 10 A14 VAL C 143 LEU C 149 -1 N VAL C 144 O PHE C 200 SHEET 11 A14 ILE C 115 MSE C 118 1 N VAL C 116 O TYR C 145 SHEET 12 A14 VAL C 52 LEU C 56 1 N ALA C 54 O ILE C 115 SHEET 13 A14 GLU C 74 GLU C 79 1 O ILE C 76 N VAL C 53 SHEET 14 A14 PHE C 99 ILE C 103 1 O PHE C 102 N CYS C 77 SHEET 1 B14 PHE B 99 ILE B 103 0 SHEET 2 B14 GLU B 74 GLU B 79 1 N CYS B 77 O LYS B 100 SHEET 3 B14 VAL B 52 LEU B 56 1 N VAL B 53 O ILE B 76 SHEET 4 B14 ILE B 115 MSE B 118 1 O ILE B 115 N ALA B 54 SHEET 5 B14 VAL B 143 LEU B 149 1 O TYR B 145 N VAL B 116 SHEET 6 B14 LEU B 190 LYS B 202 -1 O PHE B 200 N VAL B 144 SHEET 7 B14 PHE B 167 PRO B 180 -1 N LEU B 173 O ILE B 197 SHEET 8 B14 PHE D 167 ILE D 179 -1 O THR D 170 N THR B 174 SHEET 9 B14 GLU D 191 LYS D 202 -1 O GLU D 191 N ILE D 179 SHEET 10 B14 VAL D 143 LEU D 149 -1 N VAL D 144 O PHE D 200 SHEET 11 B14 ILE D 115 MSE D 118 1 N VAL D 116 O TYR D 145 SHEET 12 B14 VAL D 52 LEU D 56 1 N ALA D 54 O ILE D 115 SHEET 13 B14 GLU D 74 GLU D 79 1 O ILE D 76 N VAL D 53 SHEET 14 B14 PHE D 99 ILE D 103 1 O PHE D 102 N CYS D 77 LINK C ILE A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N ASN A 119 1555 1555 1.33 LINK C MSE B 2 N THR B 3 1555 1555 1.33 LINK C ILE B 117 N MSE B 118 1555 1555 1.33 LINK C MSE B 118 N ASN B 119 1555 1555 1.33 LINK C MSE C 1 N MSE C 2 1555 1555 1.33 LINK C MSE C 2 N THR C 3 1555 1555 1.33 LINK C ILE C 117 N MSE C 118 1555 1555 1.33 LINK C MSE C 118 N ASN C 119 1555 1555 1.33 LINK C MSE D 1 N MSE D 2 1555 1555 1.33 LINK C MSE D 2 N THR D 3 1555 1555 1.33 LINK C ILE D 117 N MSE D 118 1555 1555 1.33 LINK C MSE D 118 N ASN D 119 1555 1555 1.33 SITE 1 AC1 21 PHE A 18 LEU A 25 GLU A 26 GLN A 27 SITE 2 AC1 21 TYR A 28 ARG A 29 THR A 30 GLY A 57 SITE 3 AC1 21 ALA A 58 GLY A 59 THR A 60 GLY A 61 SITE 4 AC1 21 VAL A 62 GLU A 79 VAL A 80 ASP A 105 SITE 5 AC1 21 VAL A 106 ASN A 119 PHE A 133 HOH A1013 SITE 6 AC1 21 HOH A1091 SITE 1 AC2 21 PHE B 18 LEU B 25 GLU B 26 GLN B 27 SITE 2 AC2 21 TYR B 28 ARG B 29 THR B 30 GLY B 57 SITE 3 AC2 21 ALA B 58 GLY B 59 THR B 60 VAL B 62 SITE 4 AC2 21 LEU B 63 GLU B 79 VAL B 80 ASP B 105 SITE 5 AC2 21 VAL B 106 ASN B 119 PHE B 133 HOH B1013 SITE 6 AC2 21 HOH B1076 SITE 1 AC3 18 PHE C 18 LEU C 25 GLU C 26 GLN C 27 SITE 2 AC3 18 TYR C 28 THR C 30 ASP C 55 GLY C 57 SITE 3 AC3 18 ALA C 58 THR C 60 GLU C 79 VAL C 80 SITE 4 AC3 18 ASP C 105 VAL C 106 ASN C 119 PHE C 133 SITE 5 AC3 18 HOH C1018 HOH C1063 SITE 1 AC4 20 PHE D 18 LEU D 25 GLU D 26 GLN D 27 SITE 2 AC4 20 TYR D 28 ARG D 29 THR D 30 GLY D 57 SITE 3 AC4 20 ALA D 58 THR D 60 GLY D 61 VAL D 62 SITE 4 AC4 20 GLU D 79 VAL D 80 ASP D 105 VAL D 106 SITE 5 AC4 20 ASN D 119 PHE D 133 HOH D1039 HOH D1057 CRYST1 206.975 43.141 118.240 90.00 92.08 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004832 0.000000 0.000175 0.00000 SCALE2 0.000000 0.023180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008463 0.00000