data_1WYL # _entry.id 1WYL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WYL pdb_00001wyl 10.2210/pdb1wyl/pdb RCSB RCSB024156 ? ? WWPDB D_1000024156 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001000142 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WYL _pdbx_database_status.recvd_initial_deposition_date 2005-02-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Kigawa, T.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the CH domain of human NEDD9 interacting protein with calponin homology and LIM domains' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'NEDD9 interacting protein with calponin homology and LIM domains' _entity.formula_weight 11932.241 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CH domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Molecule interacting with CasL protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGI TPVVSAQAVVAGSDPLGLIAYLSHFHSAFKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGTQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGI TPVVSAQAVVAGSDPLGLIAYLSHFHSAFKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001000142 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 THR n 1 9 GLN n 1 10 GLU n 1 11 GLU n 1 12 LEU n 1 13 LEU n 1 14 ARG n 1 15 TRP n 1 16 CYS n 1 17 GLN n 1 18 GLU n 1 19 GLN n 1 20 THR n 1 21 ALA n 1 22 GLY n 1 23 TYR n 1 24 PRO n 1 25 GLY n 1 26 VAL n 1 27 HIS n 1 28 VAL n 1 29 SER n 1 30 ASP n 1 31 LEU n 1 32 SER n 1 33 SER n 1 34 SER n 1 35 TRP n 1 36 ALA n 1 37 ASP n 1 38 GLY n 1 39 LEU n 1 40 ALA n 1 41 LEU n 1 42 CYS n 1 43 ALA n 1 44 LEU n 1 45 VAL n 1 46 TYR n 1 47 ARG n 1 48 LEU n 1 49 GLN n 1 50 PRO n 1 51 GLY n 1 52 LEU n 1 53 LEU n 1 54 GLU n 1 55 PRO n 1 56 SER n 1 57 GLU n 1 58 LEU n 1 59 GLN n 1 60 GLY n 1 61 LEU n 1 62 GLY n 1 63 ALA n 1 64 LEU n 1 65 GLU n 1 66 ALA n 1 67 THR n 1 68 ALA n 1 69 TRP n 1 70 ALA n 1 71 LEU n 1 72 LYS n 1 73 VAL n 1 74 ALA n 1 75 GLU n 1 76 ASN n 1 77 GLU n 1 78 LEU n 1 79 GLY n 1 80 ILE n 1 81 THR n 1 82 PRO n 1 83 VAL n 1 84 VAL n 1 85 SER n 1 86 ALA n 1 87 GLN n 1 88 ALA n 1 89 VAL n 1 90 VAL n 1 91 ALA n 1 92 GLY n 1 93 SER n 1 94 ASP n 1 95 PRO n 1 96 LEU n 1 97 GLY n 1 98 LEU n 1 99 ILE n 1 100 ALA n 1 101 TYR n 1 102 LEU n 1 103 SER n 1 104 HIS n 1 105 PHE n 1 106 HIS n 1 107 SER n 1 108 ALA n 1 109 PHE n 1 110 LYS n 1 111 SER n 1 112 GLY n 1 113 PRO n 1 114 SER n 1 115 SER n 1 116 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene NICAL _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040315-92 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MICA1_HUMAN _struct_ref.pdbx_db_accession Q8TDZ2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQGLGALEATAWALKVAENELGITPVVSAQ AVVAGSDPLGLIAYLSHFHSAFK ; _struct_ref.pdbx_align_begin 510 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WYL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8TDZ2 _struct_ref_seq.db_align_beg 510 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 612 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 110 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WYL GLY A 1 ? UNP Q8TDZ2 ? ? 'cloning artifact' 1 1 1 1WYL SER A 2 ? UNP Q8TDZ2 ? ? 'cloning artifact' 2 2 1 1WYL SER A 3 ? UNP Q8TDZ2 ? ? 'cloning artifact' 3 3 1 1WYL GLY A 4 ? UNP Q8TDZ2 ? ? 'cloning artifact' 4 4 1 1WYL SER A 5 ? UNP Q8TDZ2 ? ? 'cloning artifact' 5 5 1 1WYL SER A 6 ? UNP Q8TDZ2 ? ? 'cloning artifact' 6 6 1 1WYL GLY A 7 ? UNP Q8TDZ2 ? ? 'cloning artifact' 7 7 1 1WYL SER A 111 ? UNP Q8TDZ2 ? ? 'cloning artifact' 111 8 1 1WYL GLY A 112 ? UNP Q8TDZ2 ? ? 'cloning artifact' 112 9 1 1WYL PRO A 113 ? UNP Q8TDZ2 ? ? 'cloning artifact' 113 10 1 1WYL SER A 114 ? UNP Q8TDZ2 ? ? 'cloning artifact' 114 11 1 1WYL SER A 115 ? UNP Q8TDZ2 ? ? 'cloning artifact' 115 12 1 1WYL GLY A 116 ? UNP Q8TDZ2 ? ? 'cloning artifact' 116 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.22mM CH domain U-15N, 13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1WYL _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1WYL _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1WYL _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guentert, P.' 5 refinement CYANA 2.0.17 'Guentert, P.' 6 # _exptl.entry_id 1WYL _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1WYL _struct.title 'Solution structure of the CH domain of human NEDD9 interacting protein with calponin homology and LIM domains' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WYL _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;CH domain, MICAL, NEDD9, structural genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, NPPSFA, National Project on Protein Structural and Functional Analyses, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 8 ? TYR A 23 ? THR A 8 TYR A 23 1 ? 16 HELX_P HELX_P2 2 GLY A 38 ? GLN A 49 ? GLY A 38 GLN A 49 1 ? 12 HELX_P HELX_P3 3 GLU A 57 ? LEU A 61 ? GLU A 57 LEU A 61 5 ? 5 HELX_P HELX_P4 4 GLY A 62 ? GLU A 77 ? GLY A 62 GLU A 77 1 ? 16 HELX_P HELX_P5 5 SER A 85 ? GLY A 92 ? SER A 85 GLY A 92 1 ? 8 HELX_P HELX_P6 6 ASP A 94 ? PHE A 109 ? ASP A 94 PHE A 109 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1WYL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WYL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 CYS 16 16 16 CYS CYS A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 TRP 69 69 69 TRP TRP A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 HIS 104 104 104 HIS HIS A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-08-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? 34.75 49.80 2 1 SER A 32 ? ? -129.13 -59.28 3 1 LEU A 48 ? ? -34.09 -39.94 4 1 LEU A 53 ? ? -44.69 168.53 5 1 PRO A 55 ? ? -69.81 81.18 6 1 ALA A 63 ? ? -36.33 -39.18 7 1 ALA A 66 ? ? -62.36 -70.54 8 1 LYS A 72 ? ? -73.89 -70.32 9 1 ASN A 76 ? ? -96.53 -63.81 10 1 GLU A 77 ? ? -73.71 -70.91 11 1 PRO A 82 ? ? -69.79 93.54 12 1 ALA A 86 ? ? -33.93 -35.20 13 1 PHE A 109 ? ? -108.75 45.39 14 2 SER A 2 ? ? -43.86 99.61 15 2 ALA A 21 ? ? -41.53 150.98 16 2 LEU A 48 ? ? -37.96 -35.68 17 2 LEU A 53 ? ? -53.98 179.88 18 2 PRO A 55 ? ? -69.77 6.63 19 2 SER A 56 ? ? -31.14 -38.32 20 2 GLU A 65 ? ? -39.41 -36.21 21 2 ASN A 76 ? ? -91.86 -62.10 22 2 GLU A 77 ? ? -76.11 -72.27 23 2 ILE A 80 ? ? -67.14 87.95 24 2 PRO A 82 ? ? -69.65 93.90 25 2 ALA A 91 ? ? -36.52 -35.68 26 2 SER A 107 ? ? -36.26 -30.80 27 2 PHE A 109 ? ? -99.80 35.18 28 3 VAL A 26 ? ? -58.51 108.39 29 3 SER A 32 ? ? -105.42 -70.98 30 3 ALA A 36 ? ? -83.85 33.08 31 3 LEU A 48 ? ? -39.12 -38.45 32 3 LEU A 53 ? ? -48.47 178.30 33 3 PRO A 55 ? ? -69.80 5.02 34 3 SER A 56 ? ? -35.27 -31.04 35 3 LEU A 61 ? ? -114.29 -72.58 36 3 GLU A 77 ? ? -80.48 -71.99 37 3 PRO A 82 ? ? -69.74 87.14 38 3 SER A 107 ? ? -36.57 -32.46 39 3 PHE A 109 ? ? -106.17 47.73 40 4 SER A 3 ? ? -43.67 106.80 41 4 VAL A 26 ? ? -52.70 108.75 42 4 VAL A 28 ? ? -62.50 99.01 43 4 SER A 32 ? ? -109.50 -72.04 44 4 LEU A 53 ? ? -50.35 -177.17 45 4 PRO A 55 ? ? -69.87 4.91 46 4 SER A 56 ? ? -32.86 -35.35 47 4 LEU A 61 ? ? -116.38 -71.26 48 4 ALA A 66 ? ? -62.09 -71.88 49 4 THR A 67 ? ? -36.75 -37.08 50 4 LYS A 72 ? ? -73.79 -70.15 51 4 ASN A 76 ? ? -97.34 -64.03 52 4 PRO A 82 ? ? -69.71 98.23 53 4 SER A 107 ? ? -34.49 -39.00 54 4 PHE A 109 ? ? -93.35 41.15 55 5 SER A 2 ? ? 70.36 41.88 56 5 VAL A 28 ? ? -53.44 99.62 57 5 SER A 32 ? ? -127.49 -65.82 58 5 LEU A 53 ? ? -50.41 -179.84 59 5 PRO A 55 ? ? -69.84 4.70 60 5 SER A 56 ? ? -33.75 -33.91 61 5 LEU A 61 ? ? -44.54 159.48 62 5 THR A 67 ? ? -38.39 -39.30 63 5 ILE A 80 ? ? -65.52 92.86 64 5 PRO A 82 ? ? -69.76 94.25 65 5 ALA A 91 ? ? -39.76 -39.25 66 5 SER A 107 ? ? -36.25 -36.39 67 5 PHE A 109 ? ? -96.64 40.02 68 6 GLN A 9 ? ? -37.06 -39.16 69 6 TYR A 23 ? ? -36.43 127.69 70 6 LEU A 31 ? ? -83.61 34.66 71 6 SER A 32 ? ? -115.35 -72.41 72 6 LEU A 48 ? ? -35.65 -37.55 73 6 LEU A 53 ? ? -49.73 -179.04 74 6 PRO A 55 ? ? -69.79 4.93 75 6 SER A 56 ? ? -32.52 -35.94 76 6 LEU A 61 ? ? -38.21 154.78 77 6 THR A 81 ? ? -37.41 134.32 78 6 PRO A 82 ? ? -69.81 92.27 79 6 SER A 107 ? ? -34.77 -35.04 80 6 PHE A 109 ? ? -93.88 40.09 81 7 LEU A 31 ? ? -106.01 56.56 82 7 SER A 32 ? ? -129.17 -70.94 83 7 LEU A 48 ? ? -36.93 -38.62 84 7 LEU A 53 ? ? -48.09 177.19 85 7 PRO A 55 ? ? -69.81 7.08 86 7 SER A 56 ? ? -30.35 -39.29 87 7 GLN A 59 ? ? -62.65 80.12 88 7 LEU A 61 ? ? -50.44 171.23 89 7 GLU A 65 ? ? -39.62 -33.46 90 7 LYS A 72 ? ? -76.16 -70.18 91 7 THR A 81 ? ? -37.78 133.70 92 7 PRO A 82 ? ? -69.78 97.10 93 7 PHE A 109 ? ? -103.82 42.04 94 7 SER A 111 ? ? 37.38 41.91 95 7 SER A 115 ? ? -49.96 100.75 96 8 ALA A 21 ? ? -39.24 148.24 97 8 VAL A 28 ? ? -56.68 101.48 98 8 SER A 32 ? ? -130.07 -58.55 99 8 LEU A 53 ? ? -50.42 177.33 100 8 PRO A 55 ? ? -69.83 98.84 101 8 LEU A 61 ? ? -39.69 160.62 102 8 ALA A 66 ? ? -67.80 -70.85 103 8 THR A 67 ? ? -38.45 -35.12 104 8 ASN A 76 ? ? -94.54 -64.36 105 8 ALA A 86 ? ? -37.67 -30.86 106 8 LYS A 110 ? ? -106.60 58.52 107 8 PRO A 113 ? ? -69.74 93.99 108 8 SER A 114 ? ? -55.81 103.72 109 9 VAL A 28 ? ? -56.52 80.71 110 9 LEU A 31 ? ? -95.74 36.93 111 9 SER A 32 ? ? -109.94 -72.10 112 9 ALA A 36 ? ? -83.98 41.83 113 9 ASP A 37 ? ? -131.25 -32.25 114 9 LEU A 53 ? ? -50.68 179.51 115 9 PRO A 55 ? ? -69.77 8.32 116 9 SER A 56 ? ? -31.87 -36.77 117 9 ASN A 76 ? ? -92.12 -63.26 118 9 THR A 81 ? ? -36.01 135.14 119 9 ALA A 91 ? ? -48.12 -19.13 120 10 GLN A 9 ? ? -36.65 -33.72 121 10 SER A 32 ? ? -115.30 -73.59 122 10 ASP A 37 ? ? -36.18 -36.16 123 10 LEU A 53 ? ? -46.36 174.16 124 10 PRO A 55 ? ? -69.72 8.37 125 10 SER A 56 ? ? -32.47 -35.76 126 10 GLU A 65 ? ? -37.70 -34.88 127 10 GLU A 77 ? ? -76.95 -72.19 128 10 THR A 81 ? ? -36.65 130.08 129 10 PRO A 82 ? ? -69.78 99.52 130 10 LYS A 110 ? ? -112.22 67.77 131 10 SER A 111 ? ? -103.18 -64.77 132 10 PRO A 113 ? ? -69.73 94.02 133 11 ALA A 21 ? ? -35.82 136.28 134 11 PRO A 24 ? ? -69.69 98.97 135 11 VAL A 28 ? ? -65.11 93.87 136 11 LEU A 31 ? ? -83.96 34.18 137 11 SER A 32 ? ? -94.67 -75.38 138 11 ALA A 36 ? ? -79.73 42.70 139 11 LEU A 53 ? ? -47.64 176.31 140 11 PRO A 55 ? ? -69.72 7.60 141 11 SER A 56 ? ? -33.27 -34.76 142 11 GLU A 77 ? ? -77.01 -73.14 143 11 PRO A 82 ? ? -69.78 94.13 144 11 SER A 107 ? ? -34.85 -34.67 145 11 PHE A 109 ? ? -96.08 43.17 146 11 PRO A 113 ? ? -69.86 -178.73 147 12 SER A 3 ? ? -46.40 104.21 148 12 SER A 5 ? ? -83.69 44.66 149 12 ALA A 21 ? ? -57.50 172.72 150 12 LEU A 53 ? ? -45.68 171.99 151 12 PRO A 55 ? ? -69.78 8.86 152 12 SER A 56 ? ? -32.13 -36.43 153 12 GLU A 65 ? ? -39.81 -37.09 154 12 GLU A 77 ? ? -93.03 -70.19 155 12 ILE A 80 ? ? -59.24 88.34 156 12 SER A 107 ? ? -34.45 -35.17 157 12 PHE A 109 ? ? -96.65 42.60 158 13 THR A 8 ? ? -48.66 161.02 159 13 SER A 32 ? ? -100.55 -70.72 160 13 LEU A 53 ? ? -49.25 -179.99 161 13 PRO A 55 ? ? -69.70 7.32 162 13 SER A 56 ? ? -32.31 -36.20 163 13 GLU A 65 ? ? -39.51 -31.98 164 13 ALA A 66 ? ? -69.36 -70.91 165 13 ASN A 76 ? ? -93.98 -65.86 166 13 ALA A 86 ? ? -34.51 -33.82 167 13 ALA A 91 ? ? -49.69 -18.04 168 13 SER A 107 ? ? -35.25 -34.12 169 13 PHE A 109 ? ? -87.36 39.11 170 13 SER A 111 ? ? 38.59 37.19 171 13 PRO A 113 ? ? -69.74 97.28 172 14 GLN A 9 ? ? -88.95 42.37 173 14 LEU A 13 ? ? -55.24 -74.22 174 14 ALA A 21 ? ? -37.39 143.67 175 14 SER A 32 ? ? -100.49 -63.29 176 14 LEU A 53 ? ? -44.89 169.74 177 14 PRO A 55 ? ? -69.80 89.05 178 14 ALA A 63 ? ? -38.80 -29.91 179 14 ALA A 66 ? ? -60.22 -71.27 180 14 THR A 67 ? ? -38.71 -36.23 181 14 ASN A 76 ? ? -94.56 -63.40 182 14 THR A 81 ? ? -33.74 131.47 183 14 PRO A 82 ? ? -69.75 95.15 184 14 ALA A 86 ? ? -37.64 -39.96 185 14 SER A 107 ? ? -38.17 -29.25 186 14 PHE A 109 ? ? -109.37 40.68 187 15 THR A 8 ? ? -42.49 158.26 188 15 TYR A 23 ? ? -38.80 121.62 189 15 VAL A 26 ? ? -59.37 101.76 190 15 LEU A 31 ? ? -117.40 52.17 191 15 SER A 32 ? ? -130.14 -63.67 192 15 ASP A 37 ? ? -35.95 -38.12 193 15 LEU A 53 ? ? -53.69 172.77 194 15 PRO A 55 ? ? -69.69 5.77 195 15 SER A 56 ? ? -33.37 -34.28 196 15 LEU A 61 ? ? -111.96 -71.78 197 15 LYS A 72 ? ? -76.72 -70.17 198 15 THR A 81 ? ? -38.10 125.33 199 15 ALA A 86 ? ? -33.94 -39.87 200 16 LEU A 31 ? ? -80.29 38.49 201 16 SER A 33 ? ? -131.58 -38.09 202 16 ASP A 37 ? ? -34.31 -36.38 203 16 LEU A 48 ? ? -34.51 -37.11 204 16 LEU A 53 ? ? -48.72 178.60 205 16 PRO A 55 ? ? -69.72 7.72 206 16 SER A 56 ? ? -31.58 -37.10 207 16 GLN A 59 ? ? -37.66 -36.69 208 16 LEU A 61 ? ? -37.77 154.52 209 16 LYS A 72 ? ? -76.77 -70.05 210 16 ASN A 76 ? ? -103.27 -64.21 211 16 PRO A 82 ? ? -69.76 94.55 212 16 ALA A 86 ? ? -34.94 -35.72 213 16 ALA A 91 ? ? -47.09 -19.90 214 16 SER A 107 ? ? -37.97 -32.12 215 17 PRO A 24 ? ? -69.75 99.37 216 17 SER A 32 ? ? -105.38 -71.25 217 17 ALA A 36 ? ? -80.35 42.45 218 17 LEU A 48 ? ? -38.54 -37.78 219 17 LEU A 53 ? ? -43.86 169.11 220 17 PRO A 55 ? ? -69.81 5.38 221 17 SER A 56 ? ? -31.99 -36.64 222 17 GLU A 65 ? ? -39.12 -36.18 223 17 ASN A 76 ? ? -94.97 -63.82 224 17 PRO A 82 ? ? -69.72 98.02 225 17 SER A 107 ? ? -37.63 -28.17 226 17 PHE A 109 ? ? -109.46 43.95 227 18 LEU A 31 ? ? -113.06 51.69 228 18 SER A 32 ? ? -133.65 -58.03 229 18 LEU A 48 ? ? -39.41 -37.12 230 18 LEU A 53 ? ? -43.60 161.55 231 18 PRO A 55 ? ? -69.71 8.42 232 18 SER A 56 ? ? -32.76 -35.21 233 18 LYS A 72 ? ? -72.55 -70.29 234 18 ASN A 76 ? ? -90.84 -65.05 235 18 ILE A 80 ? ? -59.25 83.48 236 18 PRO A 113 ? ? -69.75 -177.67 237 19 SER A 2 ? ? -45.06 103.96 238 19 THR A 8 ? ? -52.39 175.29 239 19 LEU A 31 ? ? -90.21 34.14 240 19 SER A 32 ? ? -108.69 -64.80 241 19 LEU A 53 ? ? -48.57 178.32 242 19 PRO A 55 ? ? -69.76 7.97 243 19 SER A 56 ? ? -32.04 -36.47 244 19 LYS A 72 ? ? -78.80 -70.42 245 19 ASN A 76 ? ? -98.01 -62.02 246 19 GLU A 77 ? ? -72.97 -70.15 247 19 PRO A 82 ? ? -69.78 95.22 248 19 SER A 107 ? ? -37.92 -27.86 249 19 SER A 114 ? ? -43.70 159.18 250 20 LEU A 31 ? ? -114.23 50.61 251 20 SER A 32 ? ? -130.00 -68.04 252 20 LEU A 53 ? ? -47.85 176.84 253 20 PRO A 55 ? ? -69.78 9.36 254 20 SER A 56 ? ? -31.81 -36.81 255 20 GLU A 77 ? ? -82.99 -73.45 256 20 ILE A 80 ? ? -69.23 90.00 257 20 PRO A 82 ? ? -69.74 97.46 258 20 SER A 107 ? ? -38.46 -34.26 259 20 PHE A 109 ? ? -107.92 48.41 260 20 PRO A 113 ? ? -69.81 82.80 261 20 SER A 115 ? ? -170.52 134.87 #